Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00279

Experiment: b-Glucan from Oat 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00278 and BACOVA_00279 are separated by 55 nucleotidesBACOVA_00279 and BACOVA_00280 are separated by 16 nucleotides BACOVA_00278: BACOVA_00278 - hypothetical protein, at 534,041 to 535,711 _00278 BACOVA_00279: BACOVA_00279 - hypothetical protein, at 535,767 to 537,449 _00279 BACOVA_00280: BACOVA_00280 - SusD family protein, at 537,466 to 539,223 _00280 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 534.770 kb on + strand, within BACOVA_00278at 534.882 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.934 kb on + strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.938 kb on - strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.939 kb on + strand, within BACOVA_00278at 534.969 kb on + strand, within BACOVA_00278at 534.971 kb on + strand, within BACOVA_00278at 535.045 kb on - strand, within BACOVA_00278at 535.050 kb on + strand, within BACOVA_00278at 535.182 kb on - strand, within BACOVA_00278at 535.214 kb on - strand, within BACOVA_00278at 535.233 kb on + strand, within BACOVA_00278at 535.233 kb on + strand, within BACOVA_00278at 535.256 kb on - strand, within BACOVA_00278at 535.263 kb on + strand, within BACOVA_00278at 535.264 kb on - strand, within BACOVA_00278at 535.318 kb on - strand, within BACOVA_00278at 535.413 kb on + strand, within BACOVA_00278at 535.417 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.429 kb on - strand, within BACOVA_00278at 535.501 kb on + strand, within BACOVA_00278at 535.502 kb on - strand, within BACOVA_00278at 535.600 kb on + strandat 535.608 kb on + strandat 535.609 kb on - strandat 535.663 kb on + strandat 535.664 kb on - strandat 535.666 kb on + strandat 535.666 kb on + strandat 535.666 kb on + strandat 535.667 kb on - strandat 535.667 kb on - strandat 535.704 kb on - strandat 535.711 kb on + strandat 535.712 kb on - strandat 535.731 kb on - strandat 535.736 kb on - strandat 535.736 kb on - strandat 535.736 kb on - strandat 535.761 kb on + strandat 535.788 kb on + strandat 535.826 kb on + strandat 535.827 kb on - strandat 535.828 kb on + strandat 535.875 kb on + strandat 535.875 kb on + strandat 535.875 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.877 kb on + strandat 535.895 kb on - strandat 535.935 kb on - strandat 535.935 kb on - strandat 535.955 kb on + strand, within BACOVA_00279at 535.955 kb on + strand, within BACOVA_00279at 535.956 kb on - strand, within BACOVA_00279at 536.135 kb on + strand, within BACOVA_00279at 536.136 kb on - strand, within BACOVA_00279at 536.192 kb on + strand, within BACOVA_00279at 536.192 kb on + strand, within BACOVA_00279at 536.193 kb on - strand, within BACOVA_00279at 536.193 kb on - strand, within BACOVA_00279at 536.195 kb on - strand, within BACOVA_00279at 536.199 kb on - strand, within BACOVA_00279at 536.207 kb on + strand, within BACOVA_00279at 536.207 kb on + strand, within BACOVA_00279at 536.353 kb on + strand, within BACOVA_00279at 536.377 kb on + strand, within BACOVA_00279at 536.383 kb on - strand, within BACOVA_00279at 536.412 kb on + strand, within BACOVA_00279at 536.448 kb on + strand, within BACOVA_00279at 536.449 kb on - strand, within BACOVA_00279at 536.455 kb on + strand, within BACOVA_00279at 536.455 kb on + strand, within BACOVA_00279at 536.456 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.469 kb on - strand, within BACOVA_00279at 536.479 kb on + strand, within BACOVA_00279at 536.558 kb on + strand, within BACOVA_00279at 536.573 kb on + strand, within BACOVA_00279at 536.579 kb on + strand, within BACOVA_00279at 536.616 kb on + strand, within BACOVA_00279at 536.636 kb on + strand, within BACOVA_00279at 536.647 kb on + strand, within BACOVA_00279at 536.687 kb on + strand, within BACOVA_00279at 536.688 kb on - strand, within BACOVA_00279at 536.719 kb on + strand, within BACOVA_00279at 536.720 kb on - strand, within BACOVA_00279at 536.741 kb on - strand, within BACOVA_00279at 536.742 kb on + strand, within BACOVA_00279at 536.743 kb on - strand, within BACOVA_00279at 536.795 kb on - strand, within BACOVA_00279at 536.855 kb on - strand, within BACOVA_00279at 536.918 kb on + strand, within BACOVA_00279at 536.923 kb on - strand, within BACOVA_00279at 536.928 kb on - strand, within BACOVA_00279at 536.946 kb on - strand, within BACOVA_00279at 536.969 kb on - strand, within BACOVA_00279at 537.049 kb on + strand, within BACOVA_00279at 537.050 kb on - strand, within BACOVA_00279at 537.112 kb on + strand, within BACOVA_00279at 537.188 kb on + strand, within BACOVA_00279at 537.189 kb on - strand, within BACOVA_00279at 537.201 kb on - strand, within BACOVA_00279at 537.289 kb on + strandat 537.289 kb on + strandat 537.289 kb on + strandat 537.290 kb on - strandat 537.357 kb on + strandat 537.358 kb on - strandat 537.358 kb on - strandat 537.358 kb on - strandat 537.367 kb on + strandat 537.367 kb on + strandat 537.367 kb on + strandat 537.367 kb on + strandat 537.368 kb on - strandat 537.372 kb on + strandat 537.389 kb on + strandat 537.423 kb on + strandat 537.467 kb on + strandat 537.467 kb on + strandat 537.471 kb on - strandat 537.492 kb on + strandat 537.494 kb on + strandat 537.543 kb on + strandat 537.594 kb on + strandat 537.611 kb on - strandat 537.619 kb on - strandat 537.754 kb on + strand, within BACOVA_00280at 537.760 kb on - strand, within BACOVA_00280at 537.760 kb on - strand, within BACOVA_00280at 537.824 kb on + strand, within BACOVA_00280at 537.890 kb on + strand, within BACOVA_00280at 537.890 kb on + strand, within BACOVA_00280at 537.890 kb on + strand, within BACOVA_00280at 537.890 kb on + strand, within BACOVA_00280at 537.892 kb on + strand, within BACOVA_00280at 537.892 kb on + strand, within BACOVA_00280at 537.893 kb on - strand, within BACOVA_00280at 537.893 kb on - strand, within BACOVA_00280at 537.896 kb on + strand, within BACOVA_00280at 537.896 kb on + strand, within BACOVA_00280at 537.916 kb on + strand, within BACOVA_00280at 537.957 kb on + strand, within BACOVA_00280at 537.957 kb on + strand, within BACOVA_00280at 537.986 kb on - strand, within BACOVA_00280at 537.986 kb on - strand, within BACOVA_00280at 537.986 kb on - strand, within BACOVA_00280at 538.074 kb on + strand, within BACOVA_00280at 538.074 kb on + strand, within BACOVA_00280at 538.100 kb on - strand, within BACOVA_00280at 538.157 kb on - strand, within BACOVA_00280at 538.157 kb on - strand, within BACOVA_00280at 538.233 kb on + strand, within BACOVA_00280at 538.234 kb on - strand, within BACOVA_00280at 538.255 kb on + strand, within BACOVA_00280at 538.256 kb on - strand, within BACOVA_00280at 538.348 kb on + strand, within BACOVA_00280at 538.430 kb on + strand, within BACOVA_00280at 538.431 kb on - strand, within BACOVA_00280

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Oat 2.5 mg/ml (C)
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534,770 + BACOVA_00278 0.44 +1.0
534,882 + BACOVA_00278 0.50 +0.1
534,934 + BACOVA_00278 0.53 +0.3
534,934 + BACOVA_00278 0.53 -0.2
534,938 - BACOVA_00278 0.54 +1.5
534,938 - BACOVA_00278 0.54 +0.9
534,938 - BACOVA_00278 0.54 +2.2
534,939 + BACOVA_00278 0.54 -1.1
534,939 + BACOVA_00278 0.54 -2.2
534,969 + BACOVA_00278 0.56 -0.8
534,971 + BACOVA_00278 0.56 -2.1
535,045 - BACOVA_00278 0.60 -0.1
535,050 + BACOVA_00278 0.60 -1.6
535,182 - BACOVA_00278 0.68 +0.2
535,214 - BACOVA_00278 0.70 +0.9
535,233 + BACOVA_00278 0.71 -0.8
535,233 + BACOVA_00278 0.71 +0.6
535,256 - BACOVA_00278 0.73 -0.1
535,263 + BACOVA_00278 0.73 +0.8
535,264 - BACOVA_00278 0.73 -0.1
535,318 - BACOVA_00278 0.76 +1.9
535,413 + BACOVA_00278 0.82 +0.1
535,417 - BACOVA_00278 0.82 +1.9
535,429 - BACOVA_00278 0.83 -0.1
535,429 - BACOVA_00278 0.83 -0.4
535,429 - BACOVA_00278 0.83 -0.9
535,429 - BACOVA_00278 0.83 +0.4
535,501 + BACOVA_00278 0.87 -0.2
535,502 - BACOVA_00278 0.87 +1.2
535,600 + -0.1
535,608 + -0.1
535,609 - +0.2
535,663 + +1.9
535,664 - +0.2
535,666 + -1.6
535,666 + +1.3
535,666 + +0.9
535,667 - +1.5
535,667 - +0.9
535,704 - -0.8
535,711 + +1.5
535,712 - -2.6
535,731 - +0.9
535,736 - -1.4
535,736 - +1.4
535,736 - -0.6
535,761 + -0.4
535,788 + -0.1
535,826 + -0.1
535,827 - -0.1
535,828 + -0.6
535,875 + +1.7
535,875 + -0.1
535,875 + +0.1
535,877 + -1.4
535,877 + -0.1
535,877 + -0.1
535,877 + +0.2
535,895 - +1.4
535,935 - -1.1
535,935 - +0.6
535,955 + BACOVA_00279 0.11 -1.1
535,955 + BACOVA_00279 0.11 -0.1
535,956 - BACOVA_00279 0.11 -0.1
536,135 + BACOVA_00279 0.22 +1.4
536,136 - BACOVA_00279 0.22 -0.6
536,192 + BACOVA_00279 0.25 +1.8
536,192 + BACOVA_00279 0.25 +0.5
536,193 - BACOVA_00279 0.25 +0.9
536,193 - BACOVA_00279 0.25 -0.9
536,195 - BACOVA_00279 0.25 +0.9
536,199 - BACOVA_00279 0.26 -2.5
536,207 + BACOVA_00279 0.26 +1.2
536,207 + BACOVA_00279 0.26 -0.5
536,353 + BACOVA_00279 0.35 +0.2
536,377 + BACOVA_00279 0.36 -0.1
536,383 - BACOVA_00279 0.37 +0.9
536,412 + BACOVA_00279 0.38 +0.8
536,448 + BACOVA_00279 0.40 +0.9
536,449 - BACOVA_00279 0.41 -0.6
536,455 + BACOVA_00279 0.41 -1.1
536,455 + BACOVA_00279 0.41 +0.9
536,456 - BACOVA_00279 0.41 +0.3
536,469 - BACOVA_00279 0.42 -2.6
536,469 - BACOVA_00279 0.42 +0.9
536,469 - BACOVA_00279 0.42 -0.6
536,479 + BACOVA_00279 0.42 -3.6
536,558 + BACOVA_00279 0.47 -1.3
536,573 + BACOVA_00279 0.48 +0.4
536,579 + BACOVA_00279 0.48 +1.0
536,616 + BACOVA_00279 0.50 -2.4
536,636 + BACOVA_00279 0.52 -0.6
536,647 + BACOVA_00279 0.52 +1.0
536,687 + BACOVA_00279 0.55 -0.1
536,688 - BACOVA_00279 0.55 +1.4
536,719 + BACOVA_00279 0.57 -0.0
536,720 - BACOVA_00279 0.57 +0.4
536,741 - BACOVA_00279 0.58 -0.1
536,742 + BACOVA_00279 0.58 +0.5
536,743 - BACOVA_00279 0.58 -0.6
536,795 - BACOVA_00279 0.61 -3.1
536,855 - BACOVA_00279 0.65 -0.1
536,918 + BACOVA_00279 0.68 +2.4
536,923 - BACOVA_00279 0.69 +0.6
536,928 - BACOVA_00279 0.69 -0.3
536,946 - BACOVA_00279 0.70 -0.5
536,969 - BACOVA_00279 0.71 -1.9
537,049 + BACOVA_00279 0.76 -0.5
537,050 - BACOVA_00279 0.76 -1.1
537,112 + BACOVA_00279 0.80 -0.2
537,188 + BACOVA_00279 0.84 -0.3
537,189 - BACOVA_00279 0.84 -1.9
537,201 - BACOVA_00279 0.85 +0.5
537,289 + -0.1
537,289 + +1.2
537,289 + -0.3
537,290 - +1.5
537,357 + -0.4
537,358 - +0.6
537,358 - -0.1
537,358 - -2.2
537,367 + -3.0
537,367 + +0.1
537,367 + +0.2
537,367 + +0.2
537,368 - -1.1
537,372 + -0.6
537,389 + -1.1
537,423 + +0.0
537,467 + -0.2
537,467 + +0.9
537,471 - +2.3
537,492 + -0.1
537,494 + +0.9
537,543 + -0.6
537,594 + +0.9
537,611 - -0.1
537,619 - +1.1
537,754 + BACOVA_00280 0.16 -0.7
537,760 - BACOVA_00280 0.17 +1.6
537,760 - BACOVA_00280 0.17 -1.6
537,824 + BACOVA_00280 0.20 -0.1
537,890 + BACOVA_00280 0.24 +1.1
537,890 + BACOVA_00280 0.24 +0.4
537,890 + BACOVA_00280 0.24 -1.2
537,890 + BACOVA_00280 0.24 -0.8
537,892 + BACOVA_00280 0.24 +0.0
537,892 + BACOVA_00280 0.24 -0.6
537,893 - BACOVA_00280 0.24 +0.7
537,893 - BACOVA_00280 0.24 -0.9
537,896 + BACOVA_00280 0.24 -1.1
537,896 + BACOVA_00280 0.24 +0.3
537,916 + BACOVA_00280 0.26 -0.1
537,957 + BACOVA_00280 0.28 +0.1
537,957 + BACOVA_00280 0.28 -0.2
537,986 - BACOVA_00280 0.30 +0.2
537,986 - BACOVA_00280 0.30 -0.9
537,986 - BACOVA_00280 0.30 -0.4
538,074 + BACOVA_00280 0.35 -1.1
538,074 + BACOVA_00280 0.35 -0.6
538,100 - BACOVA_00280 0.36 -0.1
538,157 - BACOVA_00280 0.39 -0.5
538,157 - BACOVA_00280 0.39 +1.1
538,233 + BACOVA_00280 0.44 +0.7
538,234 - BACOVA_00280 0.44 +0.3
538,255 + BACOVA_00280 0.45 +0.6
538,256 - BACOVA_00280 0.45 -1.1
538,348 + BACOVA_00280 0.50 -0.4
538,430 + BACOVA_00280 0.55 +0.9
538,431 - BACOVA_00280 0.55 -0.1

Or see this region's nucleotide sequence