Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05412 and BACOVA_05413 overlap by 4 nucleotides BACOVA_05413 and BACOVA_05414 overlap by 53 nucleotides BACOVA_05414 and BACOVA_05415 are separated by 101 nucleotides BACOVA_05415 and BACOVA_05416 overlap by 17 nucleotides
BACOVA_05412: BACOVA_05412 - hypothetical protein, at 891,842 to 892,195
_05412
BACOVA_05413: BACOVA_05413 - VirE N-terminal domain protein, at 892,192 to 892,791
_05413
BACOVA_05414: BACOVA_05414 - primase C terminal 2 (PriCT-2), at 892,739 to 894,544
_05414
BACOVA_05415: BACOVA_05415 - hypothetical protein, at 894,646 to 895,014
_05415
BACOVA_05416: BACOVA_05416 - relaxase/mobilization nuclease domain protein, at 894,998 to 895,897
_05416
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 891.785 kb on - strand at 891.785 kb on - strand at 891.796 kb on - strand at 891.810 kb on - strand at 891.891 kb on - strand, within BACOVA_05412 at 891.916 kb on - strand, within BACOVA_05412 at 891.944 kb on - strand, within BACOVA_05412 at 891.979 kb on - strand, within BACOVA_05412 at 891.979 kb on - strand, within BACOVA_05412 at 892.000 kb on - strand, within BACOVA_05412 at 892.000 kb on - strand, within BACOVA_05412 at 892.060 kb on - strand, within BACOVA_05412 at 892.060 kb on - strand, within BACOVA_05412 at 892.064 kb on - strand, within BACOVA_05412 at 892.129 kb on + strand, within BACOVA_05412 at 892.211 kb on - strand at 892.211 kb on - strand at 892.211 kb on - strand at 892.211 kb on - strand at 892.265 kb on + strand, within BACOVA_05413 at 892.266 kb on - strand, within BACOVA_05413 at 892.266 kb on - strand, within BACOVA_05413 at 892.266 kb on - strand, within BACOVA_05413 at 892.270 kb on - strand, within BACOVA_05413 at 892.270 kb on - strand, within BACOVA_05413 at 892.289 kb on - strand, within BACOVA_05413 at 892.363 kb on + strand, within BACOVA_05413 at 892.535 kb on + strand, within BACOVA_05413 at 892.535 kb on + strand, within BACOVA_05413 at 892.574 kb on + strand, within BACOVA_05413 at 892.703 kb on - strand, within BACOVA_05413 at 892.718 kb on - strand, within BACOVA_05413 at 892.718 kb on - strand, within BACOVA_05413 at 892.718 kb on - strand, within BACOVA_05413 at 892.720 kb on - strand, within BACOVA_05413 at 892.720 kb on - strand, within BACOVA_05413 at 892.808 kb on - strand at 892.808 kb on - strand at 892.808 kb on - strand at 892.817 kb on - strand at 892.825 kb on + strand at 892.827 kb on + strand at 892.828 kb on - strand at 892.828 kb on - strand at 892.829 kb on + strand at 892.829 kb on + strand at 892.830 kb on - strand at 892.832 kb on - strand at 892.832 kb on - strand at 892.840 kb on - strand at 892.892 kb on - strand at 892.892 kb on - strand at 892.905 kb on - strand at 892.906 kb on + strand at 892.971 kb on - strand, within BACOVA_05414 at 892.971 kb on - strand, within BACOVA_05414 at 893.002 kb on + strand, within BACOVA_05414 at 893.033 kb on + strand, within BACOVA_05414 at 893.033 kb on + strand, within BACOVA_05414 at 893.034 kb on - strand, within BACOVA_05414 at 893.034 kb on - strand, within BACOVA_05414 at 893.062 kb on + strand, within BACOVA_05414 at 893.170 kb on + strand, within BACOVA_05414 at 893.258 kb on - strand, within BACOVA_05414 at 893.290 kb on - strand, within BACOVA_05414 at 893.330 kb on - strand, within BACOVA_05414 at 893.330 kb on - strand, within BACOVA_05414 at 893.373 kb on + strand, within BACOVA_05414 at 893.424 kb on + strand, within BACOVA_05414 at 893.425 kb on - strand, within BACOVA_05414 at 893.515 kb on + strand, within BACOVA_05414 at 893.516 kb on - strand, within BACOVA_05414 at 893.570 kb on - strand, within BACOVA_05414 at 893.590 kb on + strand, within BACOVA_05414 at 893.591 kb on - strand, within BACOVA_05414 at 893.771 kb on + strand, within BACOVA_05414 at 893.782 kb on - strand, within BACOVA_05414 at 893.829 kb on + strand, within BACOVA_05414 at 893.829 kb on + strand, within BACOVA_05414 at 893.830 kb on - strand, within BACOVA_05414 at 893.883 kb on - strand, within BACOVA_05414 at 893.885 kb on - strand, within BACOVA_05414 at 894.056 kb on - strand, within BACOVA_05414 at 894.120 kb on + strand, within BACOVA_05414 at 894.152 kb on - strand, within BACOVA_05414 at 894.153 kb on + strand, within BACOVA_05414 at 894.154 kb on - strand, within BACOVA_05414 at 894.154 kb on - strand, within BACOVA_05414 at 894.266 kb on - strand, within BACOVA_05414 at 894.366 kb on - strand at 894.366 kb on - strand at 894.389 kb on - strand at 894.392 kb on - strand at 894.423 kb on - strand at 894.439 kb on - strand at 894.514 kb on - strand at 894.524 kb on - strand at 894.563 kb on - strand at 894.563 kb on - strand at 894.641 kb on + strand at 894.641 kb on + strand at 894.646 kb on - strand at 894.737 kb on - strand, within BACOVA_05415 at 894.739 kb on - strand, within BACOVA_05415 at 894.742 kb on + strand, within BACOVA_05415 at 894.743 kb on - strand, within BACOVA_05415 at 894.743 kb on - strand, within BACOVA_05415 at 894.743 kb on - strand, within BACOVA_05415 at 894.743 kb on - strand, within BACOVA_05415 at 894.829 kb on - strand, within BACOVA_05415 at 894.829 kb on - strand, within BACOVA_05415 at 894.880 kb on - strand, within BACOVA_05415 at 894.914 kb on - strand, within BACOVA_05415 at 894.949 kb on - strand, within BACOVA_05415 at 894.949 kb on - strand, within BACOVA_05415 at 894.949 kb on - strand, within BACOVA_05415 at 894.952 kb on - strand, within BACOVA_05415 at 894.953 kb on + strand, within BACOVA_05415 at 894.984 kb on - strand at 894.984 kb on - strand at 895.039 kb on - strand at 895.083 kb on + strand at 895.083 kb on + strand at 895.083 kb on + strand at 895.094 kb on + strand, within BACOVA_05416 at 895.095 kb on - strand, within BACOVA_05416 at 895.095 kb on - strand, within BACOVA_05416 at 895.095 kb on - strand, within BACOVA_05416 at 895.120 kb on + strand, within BACOVA_05416 at 895.120 kb on + strand, within BACOVA_05416 at 895.121 kb on - strand, within BACOVA_05416 at 895.216 kb on + strand, within BACOVA_05416 at 895.250 kb on - strand, within BACOVA_05416 at 895.250 kb on - strand, within BACOVA_05416 at 895.310 kb on + strand, within BACOVA_05416 at 895.311 kb on - strand, within BACOVA_05416 at 895.312 kb on + strand, within BACOVA_05416 at 895.312 kb on + strand, within BACOVA_05416 at 895.313 kb on - strand, within BACOVA_05416 at 895.313 kb on - strand, within BACOVA_05416 at 895.354 kb on + strand, within BACOVA_05416 at 895.356 kb on + strand, within BACOVA_05416 at 895.357 kb on - strand, within BACOVA_05416 at 895.375 kb on + strand, within BACOVA_05416 at 895.385 kb on - strand, within BACOVA_05416 at 895.504 kb on - strand, within BACOVA_05416 at 895.527 kb on - strand, within BACOVA_05416 at 895.529 kb on - strand, within BACOVA_05416
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 891,785 - -0.3 891,785 - -0.6 891,796 - -0.2 891,810 - -0.9 891,891 - BACOVA_05412 0.14 +1.2 891,916 - BACOVA_05412 0.21 +0.8 891,944 - BACOVA_05412 0.29 +1.7 891,979 - BACOVA_05412 0.39 -0.2 891,979 - BACOVA_05412 0.39 +0.8 892,000 - BACOVA_05412 0.45 +0.6 892,000 - BACOVA_05412 0.45 -0.1 892,060 - BACOVA_05412 0.62 -1.9 892,060 - BACOVA_05412 0.62 -0.1 892,064 - BACOVA_05412 0.63 +0.3 892,129 + BACOVA_05412 0.81 -0.2 892,211 - +1.6 892,211 - +0.3 892,211 - -3.2 892,211 - +0.2 892,265 + BACOVA_05413 0.12 +0.4 892,266 - BACOVA_05413 0.12 +0.3 892,266 - BACOVA_05413 0.12 -1.4 892,266 - BACOVA_05413 0.12 -1.8 892,270 - BACOVA_05413 0.13 -0.6 892,270 - BACOVA_05413 0.13 +0.8 892,289 - BACOVA_05413 0.16 -1.4 892,363 + BACOVA_05413 0.28 +0.7 892,535 + BACOVA_05413 0.57 +0.2 892,535 + BACOVA_05413 0.57 +0.4 892,574 + BACOVA_05413 0.64 +1.4 892,703 - BACOVA_05413 0.85 -1.5 892,718 - BACOVA_05413 0.88 -0.4 892,718 - BACOVA_05413 0.88 -0.6 892,718 - BACOVA_05413 0.88 +0.2 892,720 - BACOVA_05413 0.88 -0.3 892,720 - BACOVA_05413 0.88 -0.9 892,808 - +0.4 892,808 - -0.4 892,808 - -1.6 892,817 - +1.8 892,825 + +0.9 892,827 + -0.8 892,828 - -0.2 892,828 - +1.4 892,829 + -0.5 892,829 + -0.6 892,830 - +0.4 892,832 - +0.0 892,832 - +2.0 892,840 - -0.2 892,892 - -2.9 892,892 - +2.6 892,905 - -0.9 892,906 + -1.4 892,971 - BACOVA_05414 0.13 -0.7 892,971 - BACOVA_05414 0.13 -0.3 893,002 + BACOVA_05414 0.15 +1.4 893,033 + BACOVA_05414 0.16 +0.6 893,033 + BACOVA_05414 0.16 +0.7 893,034 - BACOVA_05414 0.16 +4.5 893,034 - BACOVA_05414 0.16 -0.8 893,062 + BACOVA_05414 0.18 -1.1 893,170 + BACOVA_05414 0.24 -0.2 893,258 - BACOVA_05414 0.29 -0.3 893,290 - BACOVA_05414 0.31 -0.8 893,330 - BACOVA_05414 0.33 +1.4 893,330 - BACOVA_05414 0.33 +0.5 893,373 + BACOVA_05414 0.35 +0.3 893,424 + BACOVA_05414 0.38 -0.2 893,425 - BACOVA_05414 0.38 +0.1 893,515 + BACOVA_05414 0.43 +0.3 893,516 - BACOVA_05414 0.43 -0.4 893,570 - BACOVA_05414 0.46 -0.8 893,590 + BACOVA_05414 0.47 +0.5 893,591 - BACOVA_05414 0.47 -0.9 893,771 + BACOVA_05414 0.57 -0.4 893,782 - BACOVA_05414 0.58 +0.7 893,829 + BACOVA_05414 0.60 -0.2 893,829 + BACOVA_05414 0.60 +1.1 893,830 - BACOVA_05414 0.60 -2.5 893,883 - BACOVA_05414 0.63 +0.4 893,885 - BACOVA_05414 0.63 +0.3 894,056 - BACOVA_05414 0.73 -1.4 894,120 + BACOVA_05414 0.76 -1.6 894,152 - BACOVA_05414 0.78 +1.4 894,153 + BACOVA_05414 0.78 -0.2 894,154 - BACOVA_05414 0.78 -0.8 894,154 - BACOVA_05414 0.78 -2.7 894,266 - BACOVA_05414 0.85 +1.6 894,366 - +0.4 894,366 - -2.2 894,389 - -0.9 894,392 - -0.2 894,423 - +1.1 894,439 - -0.8 894,514 - -1.1 894,524 - -0.4 894,563 - +0.2 894,563 - +1.0 894,641 + +2.0 894,641 + -1.6 894,646 - -1.6 894,737 - BACOVA_05415 0.25 -0.7 894,739 - BACOVA_05415 0.25 -0.9 894,742 + BACOVA_05415 0.26 -2.1 894,743 - BACOVA_05415 0.26 +0.4 894,743 - BACOVA_05415 0.26 +0.8 894,743 - BACOVA_05415 0.26 +2.4 894,743 - BACOVA_05415 0.26 +0.2 894,829 - BACOVA_05415 0.50 -0.1 894,829 - BACOVA_05415 0.50 +0.5 894,880 - BACOVA_05415 0.63 -1.1 894,914 - BACOVA_05415 0.73 -1.8 894,949 - BACOVA_05415 0.82 +1.9 894,949 - BACOVA_05415 0.82 -0.7 894,949 - BACOVA_05415 0.82 -1.4 894,952 - BACOVA_05415 0.83 +2.8 894,953 + BACOVA_05415 0.83 -1.4 894,984 - -0.4 894,984 - +1.4 895,039 - +0.1 895,083 + -0.2 895,083 + -0.3 895,083 + +1.0 895,094 + BACOVA_05416 0.11 +0.1 895,095 - BACOVA_05416 0.11 +1.1 895,095 - BACOVA_05416 0.11 +0.6 895,095 - BACOVA_05416 0.11 -1.2 895,120 + BACOVA_05416 0.14 +0.0 895,120 + BACOVA_05416 0.14 -0.9 895,121 - BACOVA_05416 0.14 +1.4 895,216 + BACOVA_05416 0.24 +0.1 895,250 - BACOVA_05416 0.28 -1.8 895,250 - BACOVA_05416 0.28 -0.6 895,310 + BACOVA_05416 0.35 +1.7 895,311 - BACOVA_05416 0.35 -1.2 895,312 + BACOVA_05416 0.35 +0.7 895,312 + BACOVA_05416 0.35 -0.9 895,313 - BACOVA_05416 0.35 +0.7 895,313 - BACOVA_05416 0.35 -0.4 895,354 + BACOVA_05416 0.40 +0.6 895,356 + BACOVA_05416 0.40 +0.7 895,357 - BACOVA_05416 0.40 -0.2 895,375 + BACOVA_05416 0.42 -1.2 895,385 - BACOVA_05416 0.43 +0.3 895,504 - BACOVA_05416 0.56 -0.7 895,527 - BACOVA_05416 0.59 +0.8 895,529 - BACOVA_05416 0.59 +0.4
Or see this region's nucleotide sequence