Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05244

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05242 and BACOVA_05243 are separated by 14 nucleotidesBACOVA_05243 and BACOVA_05244 overlap by 8 nucleotidesBACOVA_05244 and BACOVA_05245 are separated by 9 nucleotides BACOVA_05242: BACOVA_05242 - 4Fe-4S binding domain protein, at 741,425 to 743,425 _05242 BACOVA_05243: BACOVA_05243 - Methyl-viologen-reducing hydrogenase, delta subunit, at 743,440 to 743,913 _05243 BACOVA_05244: BACOVA_05244 - 4Fe-4S binding domain protein, at 743,906 to 744,706 _05244 BACOVA_05245: BACOVA_05245 - 4Fe-4S binding domain protein, at 744,716 to 745,729 _05245 Position (kb) 743 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 742.973 kb on + strand, within BACOVA_05242at 743.112 kb on + strand, within BACOVA_05242at 743.112 kb on + strand, within BACOVA_05242at 743.158 kb on - strand, within BACOVA_05242at 743.174 kb on - strand, within BACOVA_05242at 743.203 kb on - strand, within BACOVA_05242at 743.203 kb on - strand, within BACOVA_05242at 743.234 kb on + strandat 743.280 kb on + strandat 743.360 kb on - strandat 743.368 kb on - strandat 743.375 kb on + strandat 743.434 kb on + strandat 743.489 kb on + strand, within BACOVA_05243at 743.516 kb on - strand, within BACOVA_05243at 743.554 kb on + strand, within BACOVA_05243at 743.562 kb on + strand, within BACOVA_05243at 743.607 kb on + strand, within BACOVA_05243at 743.607 kb on + strand, within BACOVA_05243at 743.608 kb on - strand, within BACOVA_05243at 743.608 kb on - strand, within BACOVA_05243at 743.650 kb on - strand, within BACOVA_05243at 743.684 kb on - strand, within BACOVA_05243at 743.685 kb on + strand, within BACOVA_05243at 743.685 kb on + strand, within BACOVA_05243at 743.686 kb on - strand, within BACOVA_05243at 743.724 kb on - strand, within BACOVA_05243at 743.760 kb on - strand, within BACOVA_05243at 743.760 kb on - strand, within BACOVA_05243at 743.902 kb on - strandat 743.941 kb on - strandat 743.967 kb on + strandat 743.973 kb on - strandat 744.061 kb on + strand, within BACOVA_05244at 744.094 kb on - strand, within BACOVA_05244at 744.115 kb on + strand, within BACOVA_05244at 744.116 kb on - strand, within BACOVA_05244at 744.184 kb on + strand, within BACOVA_05244at 744.185 kb on - strand, within BACOVA_05244at 744.224 kb on - strand, within BACOVA_05244at 744.258 kb on - strand, within BACOVA_05244at 744.373 kb on + strand, within BACOVA_05244at 744.374 kb on - strand, within BACOVA_05244at 744.427 kb on + strand, within BACOVA_05244at 744.428 kb on - strand, within BACOVA_05244at 744.484 kb on + strand, within BACOVA_05244at 744.530 kb on - strand, within BACOVA_05244at 744.548 kb on - strand, within BACOVA_05244at 744.596 kb on - strand, within BACOVA_05244at 744.661 kb on - strandat 744.700 kb on - strandat 744.705 kb on - strandat 744.730 kb on + strandat 744.819 kb on + strand, within BACOVA_05245at 744.820 kb on - strand, within BACOVA_05245at 744.852 kb on + strand, within BACOVA_05245at 744.863 kb on + strand, within BACOVA_05245at 744.864 kb on - strand, within BACOVA_05245at 744.926 kb on + strand, within BACOVA_05245at 744.970 kb on + strand, within BACOVA_05245at 744.970 kb on + strand, within BACOVA_05245at 744.975 kb on + strand, within BACOVA_05245at 745.059 kb on - strand, within BACOVA_05245at 745.060 kb on + strand, within BACOVA_05245at 745.061 kb on - strand, within BACOVA_05245at 745.071 kb on + strand, within BACOVA_05245at 745.071 kb on + strand, within BACOVA_05245at 745.101 kb on + strand, within BACOVA_05245at 745.102 kb on - strand, within BACOVA_05245at 745.111 kb on - strand, within BACOVA_05245at 745.145 kb on - strand, within BACOVA_05245at 745.280 kb on - strand, within BACOVA_05245at 745.300 kb on + strand, within BACOVA_05245at 745.310 kb on + strand, within BACOVA_05245at 745.311 kb on - strand, within BACOVA_05245at 745.311 kb on - strand, within BACOVA_05245at 745.346 kb on - strand, within BACOVA_05245at 745.434 kb on - strand, within BACOVA_05245at 745.535 kb on - strand, within BACOVA_05245at 745.543 kb on + strand, within BACOVA_05245at 745.544 kb on - strand, within BACOVA_05245at 745.603 kb on + strand, within BACOVA_05245at 745.604 kb on - strand, within BACOVA_05245at 745.613 kb on + strand, within BACOVA_05245at 745.614 kb on - strand, within BACOVA_05245at 745.615 kb on + strand, within BACOVA_05245at 745.616 kb on - strand, within BACOVA_05245at 745.685 kb on - strandat 745.685 kb on - strandat 745.690 kb on + strandat 745.692 kb on + strandat 745.692 kb on + strandat 745.693 kb on - strandat 745.704 kb on + strandat 745.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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742,973 + BACOVA_05242 0.77 -2.3
743,112 + BACOVA_05242 0.84 -2.2
743,112 + BACOVA_05242 0.84 -0.5
743,158 - BACOVA_05242 0.87 +0.5
743,174 - BACOVA_05242 0.87 +2.6
743,203 - BACOVA_05242 0.89 -0.1
743,203 - BACOVA_05242 0.89 -0.2
743,234 + -1.4
743,280 + -2.9
743,360 - -0.9
743,368 - -0.6
743,375 + -1.5
743,434 + -1.1
743,489 + BACOVA_05243 0.10 -0.9
743,516 - BACOVA_05243 0.16 -1.5
743,554 + BACOVA_05243 0.24 +0.5
743,562 + BACOVA_05243 0.26 -0.1
743,607 + BACOVA_05243 0.35 -0.5
743,607 + BACOVA_05243 0.35 -1.5
743,608 - BACOVA_05243 0.35 -0.0
743,608 - BACOVA_05243 0.35 +0.8
743,650 - BACOVA_05243 0.44 +0.5
743,684 - BACOVA_05243 0.51 -0.2
743,685 + BACOVA_05243 0.52 -1.9
743,685 + BACOVA_05243 0.52 -0.5
743,686 - BACOVA_05243 0.52 -2.9
743,724 - BACOVA_05243 0.60 +0.1
743,760 - BACOVA_05243 0.68 +0.4
743,760 - BACOVA_05243 0.68 +2.5
743,902 - -1.5
743,941 - -1.1
743,967 + -2.3
743,973 - -0.1
744,061 + BACOVA_05244 0.19 -2.2
744,094 - BACOVA_05244 0.23 -1.4
744,115 + BACOVA_05244 0.26 -3.9
744,116 - BACOVA_05244 0.26 +1.1
744,184 + BACOVA_05244 0.35 -1.5
744,185 - BACOVA_05244 0.35 +2.1
744,224 - BACOVA_05244 0.40 -0.7
744,258 - BACOVA_05244 0.44 -1.0
744,373 + BACOVA_05244 0.58 -1.0
744,374 - BACOVA_05244 0.58 -0.1
744,427 + BACOVA_05244 0.65 +0.5
744,428 - BACOVA_05244 0.65 -0.5
744,484 + BACOVA_05244 0.72 -0.9
744,530 - BACOVA_05244 0.78 +0.5
744,548 - BACOVA_05244 0.80 -0.7
744,596 - BACOVA_05244 0.86 +1.9
744,661 - -1.0
744,700 - -0.1
744,705 - -0.9
744,730 + -2.4
744,819 + BACOVA_05245 0.10 -2.5
744,820 - BACOVA_05245 0.10 -0.5
744,852 + BACOVA_05245 0.13 -4.5
744,863 + BACOVA_05245 0.14 -0.3
744,864 - BACOVA_05245 0.15 +0.2
744,926 + BACOVA_05245 0.21 +1.5
744,970 + BACOVA_05245 0.25 -1.4
744,970 + BACOVA_05245 0.25 +0.3
744,975 + BACOVA_05245 0.26 -1.7
745,059 - BACOVA_05245 0.34 -1.7
745,060 + BACOVA_05245 0.34 -0.9
745,061 - BACOVA_05245 0.34 +0.9
745,071 + BACOVA_05245 0.35 -0.9
745,071 + BACOVA_05245 0.35 -2.6
745,101 + BACOVA_05245 0.38 -1.9
745,102 - BACOVA_05245 0.38 -0.9
745,111 - BACOVA_05245 0.39 -0.9
745,145 - BACOVA_05245 0.42 -0.5
745,280 - BACOVA_05245 0.56 -0.1
745,300 + BACOVA_05245 0.58 -0.1
745,310 + BACOVA_05245 0.59 -2.3
745,311 - BACOVA_05245 0.59 -0.4
745,311 - BACOVA_05245 0.59 +0.6
745,346 - BACOVA_05245 0.62 +1.5
745,434 - BACOVA_05245 0.71 -0.4
745,535 - BACOVA_05245 0.81 +1.5
745,543 + BACOVA_05245 0.82 +0.9
745,544 - BACOVA_05245 0.82 -0.0
745,603 + BACOVA_05245 0.87 -2.5
745,604 - BACOVA_05245 0.88 -0.9
745,613 + BACOVA_05245 0.88 -3.9
745,614 - BACOVA_05245 0.89 +2.5
745,615 + BACOVA_05245 0.89 -3.0
745,616 - BACOVA_05245 0.89 -1.1
745,685 - -0.4
745,685 - +2.7
745,690 + -0.9
745,692 + -2.9
745,692 + -2.6
745,693 - +0.4
745,704 + -2.6
745,705 - +1.0

Or see this region's nucleotide sequence