Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05167

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05165 and BACOVA_05166 are separated by 47 nucleotidesBACOVA_05166 and BACOVA_05167 are separated by 27 nucleotidesBACOVA_05167 and BACOVA_05168 are separated by 105 nucleotidesBACOVA_05168 and BACOVA_05169 are separated by 12 nucleotides BACOVA_05165: BACOVA_05165 - Sigma-70 region 2, at 652,880 to 653,431 _05165 BACOVA_05166: BACOVA_05166 - hypothetical protein, at 653,479 to 653,859 _05166 BACOVA_05167: BACOVA_05167 - hypothetical protein, at 653,887 to 654,354 _05167 BACOVA_05168: BACOVA_05168 - MazG family protein, at 654,460 to 655,248 _05168 BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244 _05169 Position (kb) 653 654 655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 652.890 kb on - strandat 652.890 kb on - strandat 652.930 kb on + strandat 652.931 kb on - strandat 652.967 kb on + strand, within BACOVA_05165at 652.967 kb on + strand, within BACOVA_05165at 652.967 kb on + strand, within BACOVA_05165at 653.072 kb on + strand, within BACOVA_05165at 653.134 kb on + strand, within BACOVA_05165at 653.135 kb on - strand, within BACOVA_05165at 653.135 kb on - strand, within BACOVA_05165at 653.173 kb on + strand, within BACOVA_05165at 653.193 kb on + strand, within BACOVA_05165at 653.193 kb on + strand, within BACOVA_05165at 653.194 kb on - strand, within BACOVA_05165at 653.194 kb on - strand, within BACOVA_05165at 653.242 kb on - strand, within BACOVA_05165at 653.290 kb on + strand, within BACOVA_05165at 653.290 kb on + strand, within BACOVA_05165at 653.291 kb on - strand, within BACOVA_05165at 653.328 kb on - strand, within BACOVA_05165at 653.381 kb on + strandat 653.381 kb on + strandat 653.382 kb on - strandat 653.430 kb on - strandat 653.430 kb on - strandat 653.499 kb on - strandat 653.546 kb on - strand, within BACOVA_05166at 653.607 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.655 kb on + strand, within BACOVA_05166at 653.754 kb on + strand, within BACOVA_05166at 653.769 kb on - strand, within BACOVA_05166at 653.822 kb on - strandat 653.825 kb on + strandat 653.834 kb on - strandat 653.834 kb on - strandat 653.834 kb on - strandat 653.852 kb on + strandat 653.853 kb on - strandat 653.862 kb on + strandat 653.898 kb on + strandat 653.918 kb on + strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.928 kb on + strandat 653.929 kb on - strandat 653.929 kb on - strandat 654.135 kb on + strand, within BACOVA_05167at 654.154 kb on + strand, within BACOVA_05167at 654.217 kb on + strand, within BACOVA_05167at 654.218 kb on - strand, within BACOVA_05167at 654.303 kb on - strand, within BACOVA_05167at 654.414 kb on + strandat 654.427 kb on + strandat 654.462 kb on - strandat 654.516 kb on + strandat 654.517 kb on - strandat 654.560 kb on + strand, within BACOVA_05168at 654.560 kb on + strand, within BACOVA_05168at 654.721 kb on + strand, within BACOVA_05168at 654.775 kb on + strand, within BACOVA_05168at 654.803 kb on + strand, within BACOVA_05168at 654.814 kb on - strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.855 kb on + strand, within BACOVA_05168at 654.856 kb on - strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.024 kb on - strand, within BACOVA_05168at 655.028 kb on + strand, within BACOVA_05168at 655.048 kb on + strand, within BACOVA_05168at 655.048 kb on + strand, within BACOVA_05168at 655.049 kb on - strand, within BACOVA_05168at 655.113 kb on - strand, within BACOVA_05168at 655.123 kb on + strand, within BACOVA_05168at 655.123 kb on + strand, within BACOVA_05168at 655.248 kb on + strandat 655.248 kb on + strandat 655.249 kb on - strandat 655.249 kb on - strandat 655.291 kb on + strandat 655.303 kb on + strandat 655.304 kb on - strandat 655.307 kb on - strandat 655.336 kb on + strandat 655.336 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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652,890 - -0.8
652,890 - -3.4
652,930 + -1.8
652,931 - -1.0
652,967 + BACOVA_05165 0.16 -1.4
652,967 + BACOVA_05165 0.16 -1.3
652,967 + BACOVA_05165 0.16 +1.5
653,072 + BACOVA_05165 0.35 +1.7
653,134 + BACOVA_05165 0.46 +0.3
653,135 - BACOVA_05165 0.46 -0.1
653,135 - BACOVA_05165 0.46 -2.0
653,173 + BACOVA_05165 0.53 -0.3
653,193 + BACOVA_05165 0.57 -0.8
653,193 + BACOVA_05165 0.57 -0.5
653,194 - BACOVA_05165 0.57 -1.5
653,194 - BACOVA_05165 0.57 +2.6
653,242 - BACOVA_05165 0.66 +0.2
653,290 + BACOVA_05165 0.74 -0.1
653,290 + BACOVA_05165 0.74 -1.5
653,291 - BACOVA_05165 0.74 +1.5
653,328 - BACOVA_05165 0.81 -1.0
653,381 + -0.9
653,381 + -0.7
653,382 - -0.5
653,430 - +0.5
653,430 - -0.6
653,499 - +2.8
653,546 - BACOVA_05166 0.18 -1.4
653,607 + BACOVA_05166 0.34 +1.1
653,653 + BACOVA_05166 0.46 +1.5
653,653 + BACOVA_05166 0.46 -1.5
653,653 + BACOVA_05166 0.46 -0.1
653,655 + BACOVA_05166 0.46 +1.2
653,754 + BACOVA_05166 0.72 -1.4
653,769 - BACOVA_05166 0.76 -2.2
653,822 - +0.9
653,825 + +1.9
653,834 - -0.1
653,834 - -0.4
653,834 - -0.3
653,852 + -1.5
653,853 - +0.5
653,862 + -1.0
653,898 + -0.3
653,918 + -0.4
653,919 - -0.1
653,919 - +1.5
653,919 - +2.1
653,919 - +0.1
653,928 + +0.8
653,929 - -0.7
653,929 - -1.0
654,135 + BACOVA_05167 0.53 -0.6
654,154 + BACOVA_05167 0.57 -0.6
654,217 + BACOVA_05167 0.71 -0.4
654,218 - BACOVA_05167 0.71 -1.5
654,303 - BACOVA_05167 0.89 +0.3
654,414 + -0.2
654,427 + -1.1
654,462 - -0.5
654,516 + -0.5
654,517 - +0.1
654,560 + BACOVA_05168 0.13 +1.6
654,560 + BACOVA_05168 0.13 -0.4
654,721 + BACOVA_05168 0.33 +1.5
654,775 + BACOVA_05168 0.40 -0.7
654,803 + BACOVA_05168 0.43 +0.2
654,814 - BACOVA_05168 0.45 -1.1
654,847 + BACOVA_05168 0.49 -2.0
654,847 + BACOVA_05168 0.49 -1.1
654,847 + BACOVA_05168 0.49 +3.0
654,848 - BACOVA_05168 0.49 +0.1
654,848 - BACOVA_05168 0.49 +0.1
654,848 - BACOVA_05168 0.49 -0.5
654,848 - BACOVA_05168 0.49 +0.1
654,855 + BACOVA_05168 0.50 -0.7
654,856 - BACOVA_05168 0.50 +0.9
655,023 + BACOVA_05168 0.71 -1.4
655,023 + BACOVA_05168 0.71 +0.1
655,023 + BACOVA_05168 0.71 -1.4
655,024 - BACOVA_05168 0.71 +1.0
655,028 + BACOVA_05168 0.72 -0.3
655,048 + BACOVA_05168 0.75 -0.7
655,048 + BACOVA_05168 0.75 +0.6
655,049 - BACOVA_05168 0.75 +0.2
655,113 - BACOVA_05168 0.83 +0.2
655,123 + BACOVA_05168 0.84 -1.1
655,123 + BACOVA_05168 0.84 -0.6
655,248 + +0.6
655,248 + +1.5
655,249 - +0.1
655,249 - -0.4
655,291 + -1.1
655,303 + +0.0
655,304 - +0.7
655,307 - -0.2
655,336 + +0.1
655,336 + +0.6

Or see this region's nucleotide sequence