Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05102

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05100 and BACOVA_05101 are separated by 137 nucleotidesBACOVA_05101 and BACOVA_05102 are separated by 128 nucleotidesBACOVA_05102 and BACOVA_05103 are separated by 165 nucleotides BACOVA_05100: BACOVA_05100 - cyclic nucleotide-binding domain protein, at 572,386 to 573,054 _05100 BACOVA_05101: BACOVA_05101 - putative membrane protein, MarC family, at 573,192 to 573,791 _05101 BACOVA_05102: BACOVA_05102 - peptidase, S54 family, at 573,920 to 574,621 _05102 BACOVA_05103: BACOVA_05103 - putative glycogen debranching enzyme, archaeal type, at 574,787 to 576,724 _05103 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 572.946 kb on + strand, within BACOVA_05100at 572.983 kb on - strand, within BACOVA_05100at 573.054 kb on + strandat 573.061 kb on + strandat 573.062 kb on - strandat 573.062 kb on - strandat 573.100 kb on + strandat 573.159 kb on + strandat 573.166 kb on + strandat 573.191 kb on + strandat 573.192 kb on - strandat 573.224 kb on + strandat 573.225 kb on - strandat 573.225 kb on - strandat 573.225 kb on - strandat 573.233 kb on + strandat 573.253 kb on + strand, within BACOVA_05101at 573.257 kb on + strand, within BACOVA_05101at 573.258 kb on - strand, within BACOVA_05101at 573.271 kb on + strand, within BACOVA_05101at 573.272 kb on - strand, within BACOVA_05101at 573.275 kb on + strand, within BACOVA_05101at 573.275 kb on + strand, within BACOVA_05101at 573.276 kb on - strand, within BACOVA_05101at 573.276 kb on - strand, within BACOVA_05101at 573.279 kb on - strand, within BACOVA_05101at 573.279 kb on - strand, within BACOVA_05101at 573.280 kb on + strand, within BACOVA_05101at 573.280 kb on + strand, within BACOVA_05101at 573.327 kb on - strand, within BACOVA_05101at 573.327 kb on - strand, within BACOVA_05101at 573.374 kb on + strand, within BACOVA_05101at 573.375 kb on - strand, within BACOVA_05101at 573.397 kb on + strand, within BACOVA_05101at 573.443 kb on + strand, within BACOVA_05101at 573.495 kb on - strand, within BACOVA_05101at 573.582 kb on + strand, within BACOVA_05101at 573.596 kb on + strand, within BACOVA_05101at 573.596 kb on + strand, within BACOVA_05101at 573.597 kb on - strand, within BACOVA_05101at 573.597 kb on - strand, within BACOVA_05101at 573.602 kb on + strand, within BACOVA_05101at 573.603 kb on - strand, within BACOVA_05101at 573.604 kb on + strand, within BACOVA_05101at 573.604 kb on + strand, within BACOVA_05101at 573.605 kb on - strand, within BACOVA_05101at 573.610 kb on + strand, within BACOVA_05101at 573.633 kb on + strand, within BACOVA_05101at 573.641 kb on - strand, within BACOVA_05101at 573.693 kb on - strand, within BACOVA_05101at 573.713 kb on + strand, within BACOVA_05101at 573.725 kb on - strand, within BACOVA_05101at 573.755 kb on + strandat 573.757 kb on + strandat 573.758 kb on - strandat 573.758 kb on - strandat 573.801 kb on + strandat 573.802 kb on - strandat 573.813 kb on + strandat 573.813 kb on + strandat 573.813 kb on + strandat 573.818 kb on + strandat 573.923 kb on + strandat 573.964 kb on + strandat 574.051 kb on + strand, within BACOVA_05102at 574.102 kb on - strand, within BACOVA_05102at 574.111 kb on + strand, within BACOVA_05102at 574.112 kb on - strand, within BACOVA_05102at 574.112 kb on - strand, within BACOVA_05102at 574.118 kb on + strand, within BACOVA_05102at 574.118 kb on + strand, within BACOVA_05102at 574.119 kb on - strand, within BACOVA_05102at 574.120 kb on + strand, within BACOVA_05102at 574.134 kb on - strand, within BACOVA_05102at 574.134 kb on - strand, within BACOVA_05102at 574.174 kb on - strand, within BACOVA_05102at 574.210 kb on + strand, within BACOVA_05102at 574.223 kb on + strand, within BACOVA_05102at 574.270 kb on + strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.275 kb on - strand, within BACOVA_05102at 574.296 kb on - strand, within BACOVA_05102at 574.310 kb on - strand, within BACOVA_05102at 574.387 kb on + strand, within BACOVA_05102at 574.400 kb on + strand, within BACOVA_05102at 574.415 kb on + strand, within BACOVA_05102at 574.416 kb on - strand, within BACOVA_05102at 574.421 kb on - strand, within BACOVA_05102at 574.425 kb on - strand, within BACOVA_05102at 574.449 kb on + strand, within BACOVA_05102at 574.503 kb on - strand, within BACOVA_05102at 574.505 kb on - strand, within BACOVA_05102at 574.561 kb on + strandat 574.588 kb on + strandat 574.598 kb on - strandat 574.699 kb on - strandat 574.735 kb on - strandat 574.738 kb on + strandat 574.743 kb on - strandat 574.773 kb on - strandat 574.787 kb on - strandat 574.794 kb on - strandat 574.885 kb on + strandat 574.932 kb on + strandat 574.996 kb on - strand, within BACOVA_05103at 575.017 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.072 kb on + strand, within BACOVA_05103at 575.074 kb on + strand, within BACOVA_05103at 575.157 kb on + strand, within BACOVA_05103at 575.158 kb on - strand, within BACOVA_05103at 575.186 kb on + strand, within BACOVA_05103at 575.253 kb on + strand, within BACOVA_05103at 575.327 kb on - strand, within BACOVA_05103at 575.330 kb on + strand, within BACOVA_05103at 575.331 kb on - strand, within BACOVA_05103at 575.331 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.350 kb on - strand, within BACOVA_05103at 575.353 kb on + strand, within BACOVA_05103at 575.353 kb on + strand, within BACOVA_05103at 575.486 kb on - strand, within BACOVA_05103

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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572,946 + BACOVA_05100 0.84 -1.1
572,983 - BACOVA_05100 0.89 -0.6
573,054 + +0.4
573,061 + +1.4
573,062 - +0.2
573,062 - -0.8
573,100 + +1.4
573,159 + -1.1
573,166 + +0.9
573,191 + -1.5
573,192 - -1.8
573,224 + -0.1
573,225 - -0.2
573,225 - -2.6
573,225 - +2.2
573,233 + -0.6
573,253 + BACOVA_05101 0.10 +0.4
573,257 + BACOVA_05101 0.11 -1.6
573,258 - BACOVA_05101 0.11 -1.1
573,271 + BACOVA_05101 0.13 -0.6
573,272 - BACOVA_05101 0.13 -0.8
573,275 + BACOVA_05101 0.14 -0.1
573,275 + BACOVA_05101 0.14 -0.5
573,276 - BACOVA_05101 0.14 -1.6
573,276 - BACOVA_05101 0.14 -2.9
573,279 - BACOVA_05101 0.14 +0.1
573,279 - BACOVA_05101 0.14 -1.7
573,280 + BACOVA_05101 0.15 -1.6
573,280 + BACOVA_05101 0.15 -1.1
573,327 - BACOVA_05101 0.23 -0.4
573,327 - BACOVA_05101 0.23 -3.7
573,374 + BACOVA_05101 0.30 +0.9
573,375 - BACOVA_05101 0.30 -0.6
573,397 + BACOVA_05101 0.34 +1.5
573,443 + BACOVA_05101 0.42 -2.9
573,495 - BACOVA_05101 0.51 -2.8
573,582 + BACOVA_05101 0.65 -2.3
573,596 + BACOVA_05101 0.67 -2.5
573,596 + BACOVA_05101 0.67 -0.9
573,597 - BACOVA_05101 0.68 +0.4
573,597 - BACOVA_05101 0.68 -1.4
573,602 + BACOVA_05101 0.68 -0.2
573,603 - BACOVA_05101 0.69 -0.6
573,604 + BACOVA_05101 0.69 -2.0
573,604 + BACOVA_05101 0.69 -1.1
573,605 - BACOVA_05101 0.69 +1.4
573,610 + BACOVA_05101 0.70 -2.6
573,633 + BACOVA_05101 0.73 -2.1
573,641 - BACOVA_05101 0.75 -0.4
573,693 - BACOVA_05101 0.83 -1.4
573,713 + BACOVA_05101 0.87 -1.4
573,725 - BACOVA_05101 0.89 +2.3
573,755 + +0.8
573,757 + -1.1
573,758 - -0.6
573,758 - -2.3
573,801 + +1.3
573,802 - +2.9
573,813 + -1.1
573,813 + +1.8
573,813 + +0.6
573,818 + -0.7
573,923 + -0.1
573,964 + -0.6
574,051 + BACOVA_05102 0.19 -1.1
574,102 - BACOVA_05102 0.26 -0.7
574,111 + BACOVA_05102 0.27 -1.6
574,112 - BACOVA_05102 0.27 +1.4
574,112 - BACOVA_05102 0.27 -0.4
574,118 + BACOVA_05102 0.28 +0.3
574,118 + BACOVA_05102 0.28 +0.0
574,119 - BACOVA_05102 0.28 -0.1
574,120 + BACOVA_05102 0.28 -0.7
574,134 - BACOVA_05102 0.30 +0.1
574,134 - BACOVA_05102 0.30 -1.4
574,174 - BACOVA_05102 0.36 +0.6
574,210 + BACOVA_05102 0.41 -0.1
574,223 + BACOVA_05102 0.43 +1.4
574,270 + BACOVA_05102 0.50 +0.2
574,275 - BACOVA_05102 0.51 -0.6
574,275 - BACOVA_05102 0.51 +2.1
574,275 - BACOVA_05102 0.51 +0.1
574,296 - BACOVA_05102 0.54 +0.4
574,310 - BACOVA_05102 0.56 +1.4
574,387 + BACOVA_05102 0.67 -1.1
574,400 + BACOVA_05102 0.68 -1.6
574,415 + BACOVA_05102 0.71 +2.2
574,416 - BACOVA_05102 0.71 +2.4
574,421 - BACOVA_05102 0.71 +1.3
574,425 - BACOVA_05102 0.72 -0.6
574,449 + BACOVA_05102 0.75 +1.4
574,503 - BACOVA_05102 0.83 -2.1
574,505 - BACOVA_05102 0.83 +1.9
574,561 + -0.4
574,588 + +0.4
574,598 - +0.1
574,699 - -0.1
574,735 - +0.6
574,738 + -0.1
574,743 - +1.9
574,773 - +1.2
574,787 - -0.4
574,794 - +3.9
574,885 + -0.6
574,932 + -0.9
574,996 - BACOVA_05103 0.11 +1.0
575,017 + BACOVA_05103 0.12 -0.6
575,072 + BACOVA_05103 0.15 +0.3
575,072 + BACOVA_05103 0.15 +0.7
575,072 + BACOVA_05103 0.15 -0.4
575,074 + BACOVA_05103 0.15 +0.4
575,157 + BACOVA_05103 0.19 +0.4
575,158 - BACOVA_05103 0.19 +0.3
575,186 + BACOVA_05103 0.21 +0.7
575,253 + BACOVA_05103 0.24 +1.0
575,327 - BACOVA_05103 0.28 +0.6
575,330 + BACOVA_05103 0.28 +0.7
575,331 - BACOVA_05103 0.28 +0.0
575,331 - BACOVA_05103 0.28 +0.3
575,350 - BACOVA_05103 0.29 +0.7
575,350 - BACOVA_05103 0.29 +1.6
575,350 - BACOVA_05103 0.29 +1.1
575,353 + BACOVA_05103 0.29 +1.7
575,353 + BACOVA_05103 0.29 -1.7
575,486 - BACOVA_05103 0.36 +0.7

Or see this region's nucleotide sequence