Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04521

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04520 and BACOVA_04521 are separated by 18 nucleotidesBACOVA_04521 and BACOVA_04522 overlap by 8 nucleotidesBACOVA_04522 and BACOVA_04523 are separated by 17 nucleotides BACOVA_04520: BACOVA_04520 - hypothetical protein, at 459,231 to 461,225 _04520 BACOVA_04521: BACOVA_04521 - hypothetical protein, at 461,244 to 462,035 _04521 BACOVA_04522: BACOVA_04522 - hypothetical protein, at 462,028 to 462,702 _04522 BACOVA_04523: BACOVA_04523 - VTC domain protein, at 462,720 to 463,505 _04523 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 460.296 kb on + strand, within BACOVA_04520at 460.331 kb on + strand, within BACOVA_04520at 460.344 kb on - strand, within BACOVA_04520at 460.374 kb on - strand, within BACOVA_04520at 460.397 kb on + strand, within BACOVA_04520at 460.418 kb on + strand, within BACOVA_04520at 460.418 kb on + strand, within BACOVA_04520at 460.496 kb on + strand, within BACOVA_04520at 460.519 kb on + strand, within BACOVA_04520at 460.634 kb on + strand, within BACOVA_04520at 460.643 kb on + strand, within BACOVA_04520at 460.644 kb on - strand, within BACOVA_04520at 460.645 kb on + strand, within BACOVA_04520at 460.721 kb on + strand, within BACOVA_04520at 460.746 kb on + strand, within BACOVA_04520at 460.747 kb on - strand, within BACOVA_04520at 460.749 kb on - strand, within BACOVA_04520at 460.749 kb on - strand, within BACOVA_04520at 460.749 kb on - strand, within BACOVA_04520at 460.789 kb on + strand, within BACOVA_04520at 460.791 kb on + strand, within BACOVA_04520at 460.831 kb on + strand, within BACOVA_04520at 460.831 kb on + strand, within BACOVA_04520at 460.831 kb on + strand, within BACOVA_04520at 460.831 kb on + strand, within BACOVA_04520at 460.836 kb on + strand, within BACOVA_04520at 460.865 kb on + strand, within BACOVA_04520at 460.865 kb on + strand, within BACOVA_04520at 460.865 kb on + strand, within BACOVA_04520at 460.885 kb on - strand, within BACOVA_04520at 460.908 kb on - strand, within BACOVA_04520at 460.908 kb on - strand, within BACOVA_04520at 460.933 kb on + strand, within BACOVA_04520at 460.933 kb on + strand, within BACOVA_04520at 460.933 kb on + strand, within BACOVA_04520at 460.934 kb on - strand, within BACOVA_04520at 460.934 kb on - strand, within BACOVA_04520at 460.937 kb on + strand, within BACOVA_04520at 461.014 kb on + strand, within BACOVA_04520at 461.014 kb on + strand, within BACOVA_04520at 461.048 kb on + strandat 461.049 kb on - strandat 461.058 kb on + strandat 461.189 kb on + strandat 461.190 kb on + strandat 461.242 kb on + strandat 461.261 kb on - strandat 461.307 kb on - strandat 461.320 kb on + strandat 461.320 kb on + strandat 461.321 kb on - strandat 461.346 kb on - strand, within BACOVA_04521at 461.349 kb on + strand, within BACOVA_04521at 461.409 kb on - strand, within BACOVA_04521at 461.435 kb on - strand, within BACOVA_04521at 461.442 kb on - strand, within BACOVA_04521at 461.442 kb on - strand, within BACOVA_04521at 461.453 kb on + strand, within BACOVA_04521at 461.453 kb on + strand, within BACOVA_04521at 461.453 kb on + strand, within BACOVA_04521at 461.454 kb on - strand, within BACOVA_04521at 461.454 kb on - strand, within BACOVA_04521at 461.459 kb on + strand, within BACOVA_04521at 461.460 kb on - strand, within BACOVA_04521at 461.463 kb on - strand, within BACOVA_04521at 461.463 kb on - strand, within BACOVA_04521at 461.463 kb on - strand, within BACOVA_04521at 461.464 kb on + strand, within BACOVA_04521at 461.475 kb on - strand, within BACOVA_04521at 461.513 kb on + strand, within BACOVA_04521at 461.578 kb on + strand, within BACOVA_04521at 461.582 kb on + strand, within BACOVA_04521at 461.582 kb on + strand, within BACOVA_04521at 461.582 kb on + strand, within BACOVA_04521at 461.585 kb on - strand, within BACOVA_04521at 461.640 kb on + strand, within BACOVA_04521at 461.686 kb on + strand, within BACOVA_04521at 461.686 kb on + strand, within BACOVA_04521at 461.735 kb on + strand, within BACOVA_04521at 461.736 kb on - strand, within BACOVA_04521at 461.771 kb on + strand, within BACOVA_04521at 461.771 kb on + strand, within BACOVA_04521at 461.774 kb on - strand, within BACOVA_04521at 461.832 kb on + strand, within BACOVA_04521at 461.923 kb on + strand, within BACOVA_04521at 461.950 kb on - strand, within BACOVA_04521at 461.950 kb on - strand, within BACOVA_04521at 462.069 kb on + strandat 462.095 kb on + strandat 462.135 kb on + strand, within BACOVA_04522at 462.193 kb on + strand, within BACOVA_04522at 462.193 kb on + strand, within BACOVA_04522at 462.217 kb on + strand, within BACOVA_04522at 462.226 kb on + strand, within BACOVA_04522at 462.226 kb on + strand, within BACOVA_04522at 462.227 kb on - strand, within BACOVA_04522at 462.236 kb on + strand, within BACOVA_04522at 462.258 kb on + strand, within BACOVA_04522at 462.294 kb on + strand, within BACOVA_04522at 462.295 kb on - strand, within BACOVA_04522at 462.319 kb on - strand, within BACOVA_04522at 462.322 kb on + strand, within BACOVA_04522at 462.322 kb on + strand, within BACOVA_04522at 462.323 kb on - strand, within BACOVA_04522at 462.392 kb on + strand, within BACOVA_04522at 462.392 kb on + strand, within BACOVA_04522at 462.392 kb on + strand, within BACOVA_04522at 462.527 kb on - strand, within BACOVA_04522at 462.534 kb on + strand, within BACOVA_04522at 462.576 kb on - strand, within BACOVA_04522at 462.588 kb on + strand, within BACOVA_04522at 462.670 kb on + strandat 462.671 kb on - strandat 462.678 kb on + strandat 462.678 kb on + strandat 462.678 kb on + strandat 462.679 kb on - strandat 462.681 kb on + strandat 462.688 kb on + strandat 462.689 kb on - strandat 462.702 kb on + strandat 462.703 kb on - strandat 462.716 kb on + strandat 462.725 kb on + strandat 462.732 kb on + strandat 462.733 kb on - strandat 462.827 kb on - strand, within BACOVA_04523at 462.831 kb on - strand, within BACOVA_04523at 462.833 kb on + strand, within BACOVA_04523at 462.868 kb on - strand, within BACOVA_04523at 462.887 kb on - strand, within BACOVA_04523at 462.913 kb on - strand, within BACOVA_04523at 462.913 kb on - strand, within BACOVA_04523at 462.935 kb on + strand, within BACOVA_04523

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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460,296 + BACOVA_04520 0.53 -0.3
460,331 + BACOVA_04520 0.55 +0.0
460,344 - BACOVA_04520 0.56 +1.4
460,374 - BACOVA_04520 0.57 +0.1
460,397 + BACOVA_04520 0.58 -0.6
460,418 + BACOVA_04520 0.59 -1.2
460,418 + BACOVA_04520 0.59 -0.8
460,496 + BACOVA_04520 0.63 +0.2
460,519 + BACOVA_04520 0.65 +0.2
460,634 + BACOVA_04520 0.70 -1.1
460,643 + BACOVA_04520 0.71 +0.1
460,644 - BACOVA_04520 0.71 -1.9
460,645 + BACOVA_04520 0.71 +0.2
460,721 + BACOVA_04520 0.75 +0.9
460,746 + BACOVA_04520 0.76 -1.4
460,747 - BACOVA_04520 0.76 -0.4
460,749 - BACOVA_04520 0.76 -0.9
460,749 - BACOVA_04520 0.76 -1.3
460,749 - BACOVA_04520 0.76 -0.1
460,789 + BACOVA_04520 0.78 +0.8
460,791 + BACOVA_04520 0.78 -0.3
460,831 + BACOVA_04520 0.80 +0.1
460,831 + BACOVA_04520 0.80 -0.1
460,831 + BACOVA_04520 0.80 -1.9
460,831 + BACOVA_04520 0.80 +0.1
460,836 + BACOVA_04520 0.80 +0.2
460,865 + BACOVA_04520 0.82 -0.9
460,865 + BACOVA_04520 0.82 -0.3
460,865 + BACOVA_04520 0.82 -0.8
460,885 - BACOVA_04520 0.83 +0.3
460,908 - BACOVA_04520 0.84 +2.5
460,908 - BACOVA_04520 0.84 +1.5
460,933 + BACOVA_04520 0.85 +2.9
460,933 + BACOVA_04520 0.85 +0.9
460,933 + BACOVA_04520 0.85 +0.1
460,934 - BACOVA_04520 0.85 -0.4
460,934 - BACOVA_04520 0.85 +2.0
460,937 + BACOVA_04520 0.86 -0.6
461,014 + BACOVA_04520 0.89 -1.1
461,014 + BACOVA_04520 0.89 -0.0
461,048 + +0.4
461,049 - -1.1
461,058 + -0.0
461,189 + -0.9
461,190 + -1.1
461,242 + +0.4
461,261 - +1.3
461,307 - -1.1
461,320 + +1.0
461,320 + -1.0
461,321 - -0.7
461,346 - BACOVA_04521 0.13 +2.8
461,349 + BACOVA_04521 0.13 -0.6
461,409 - BACOVA_04521 0.21 -0.1
461,435 - BACOVA_04521 0.24 +0.9
461,442 - BACOVA_04521 0.25 +1.4
461,442 - BACOVA_04521 0.25 +1.7
461,453 + BACOVA_04521 0.26 +0.9
461,453 + BACOVA_04521 0.26 +1.4
461,453 + BACOVA_04521 0.26 -0.3
461,454 - BACOVA_04521 0.27 +1.9
461,454 - BACOVA_04521 0.27 +0.6
461,459 + BACOVA_04521 0.27 +1.1
461,460 - BACOVA_04521 0.27 +0.4
461,463 - BACOVA_04521 0.28 -0.1
461,463 - BACOVA_04521 0.28 +2.9
461,463 - BACOVA_04521 0.28 +0.3
461,464 + BACOVA_04521 0.28 -0.1
461,475 - BACOVA_04521 0.29 +2.7
461,513 + BACOVA_04521 0.34 -1.0
461,578 + BACOVA_04521 0.42 -0.4
461,582 + BACOVA_04521 0.43 -0.5
461,582 + BACOVA_04521 0.43 -0.1
461,582 + BACOVA_04521 0.43 -0.3
461,585 - BACOVA_04521 0.43 -0.1
461,640 + BACOVA_04521 0.50 +0.2
461,686 + BACOVA_04521 0.56 +0.7
461,686 + BACOVA_04521 0.56 +0.6
461,735 + BACOVA_04521 0.62 -1.0
461,736 - BACOVA_04521 0.62 -0.1
461,771 + BACOVA_04521 0.67 +0.8
461,771 + BACOVA_04521 0.67 +2.4
461,774 - BACOVA_04521 0.67 +0.3
461,832 + BACOVA_04521 0.74 +0.7
461,923 + BACOVA_04521 0.86 -0.7
461,950 - BACOVA_04521 0.89 +0.9
461,950 - BACOVA_04521 0.89 +0.8
462,069 + -2.0
462,095 + -0.0
462,135 + BACOVA_04522 0.16 -0.3
462,193 + BACOVA_04522 0.24 -0.9
462,193 + BACOVA_04522 0.24 -1.2
462,217 + BACOVA_04522 0.28 +0.1
462,226 + BACOVA_04522 0.29 -0.3
462,226 + BACOVA_04522 0.29 -1.3
462,227 - BACOVA_04522 0.29 +0.4
462,236 + BACOVA_04522 0.31 +0.3
462,258 + BACOVA_04522 0.34 +0.8
462,294 + BACOVA_04522 0.39 +0.9
462,295 - BACOVA_04522 0.40 -0.6
462,319 - BACOVA_04522 0.43 +0.7
462,322 + BACOVA_04522 0.44 +1.9
462,322 + BACOVA_04522 0.44 +2.4
462,323 - BACOVA_04522 0.44 +2.1
462,392 + BACOVA_04522 0.54 -0.8
462,392 + BACOVA_04522 0.54 -1.1
462,392 + BACOVA_04522 0.54 -1.6
462,527 - BACOVA_04522 0.74 +1.1
462,534 + BACOVA_04522 0.75 +0.9
462,576 - BACOVA_04522 0.81 +1.4
462,588 + BACOVA_04522 0.83 +0.6
462,670 + -0.3
462,671 - -0.1
462,678 + -0.6
462,678 + +0.4
462,678 + -0.8
462,679 - -0.6
462,681 + +0.7
462,688 + -0.0
462,689 - -1.4
462,702 + +0.4
462,703 - -0.7
462,716 + +1.4
462,725 + +0.2
462,732 + +1.4
462,733 - +1.6
462,827 - BACOVA_04523 0.14 +2.0
462,831 - BACOVA_04523 0.14 -0.1
462,833 + BACOVA_04523 0.14 -1.3
462,868 - BACOVA_04523 0.19 +0.0
462,887 - BACOVA_04523 0.21 +0.5
462,913 - BACOVA_04523 0.25 -1.4
462,913 - BACOVA_04523 0.25 +0.4
462,935 + BACOVA_04523 0.27 +1.7

Or see this region's nucleotide sequence