Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04364 and BACOVA_04365 overlap by 4 nucleotides BACOVA_04365 and BACOVA_04366 overlap by 41 nucleotides BACOVA_04366 and BACOVA_04367 are separated by 160 nucleotides BACOVA_04367 and BACOVA_04368 are separated by 189 nucleotides BACOVA_04368 and BACOVA_04369 are separated by 108 nucleotides BACOVA_04369 and BACOVA_04370 are separated by 36 nucleotides
BACOVA_04364: BACOVA_04364 - hypothetical protein, at 260,207 to 260,827
_04364
BACOVA_04365: BACOVA_04365 - hypothetical protein, at 260,824 to 260,973
_04365
BACOVA_04366: BACOVA_04366 - hypothetical protein, at 260,933 to 261,037
_04366
BACOVA_04367: BACOVA_04367 - hypothetical protein, at 261,198 to 261,446
_04367
BACOVA_04368: BACOVA_04368 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 261,636 to 263,618
_04368
BACOVA_04369: BACOVA_04369 - nucleotidyl transferase, at 263,727 to 264,476
_04369
BACOVA_04370: BACOVA_04370 - phosphotransferase enzyme family, at 264,513 to 265,943
_04370
Position (kb) 261
262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 260.636 kb on - strand, within BACOVA_04364 at 260.706 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.714 kb on - strand, within BACOVA_04364 at 260.717 kb on - strand, within BACOVA_04364 at 260.727 kb on - strand, within BACOVA_04364 at 260.811 kb on + strand at 260.811 kb on + strand at 260.811 kb on + strand at 260.812 kb on - strand at 260.812 kb on - strand at 260.814 kb on - strand at 260.829 kb on + strand at 260.863 kb on + strand, within BACOVA_04365 at 260.934 kb on + strand at 260.935 kb on - strand at 260.974 kb on + strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 261.001 kb on - strand, within BACOVA_04366 at 261.052 kb on + strand at 261.061 kb on - strand at 261.176 kb on + strand at 261.177 kb on - strand at 261.186 kb on + strand at 261.186 kb on + strand at 261.187 kb on - strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.189 kb on - strand at 261.189 kb on - strand at 261.190 kb on + strand at 261.191 kb on - strand at 261.197 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.217 kb on + strand at 261.219 kb on + strand at 261.254 kb on - strand, within BACOVA_04367 at 261.391 kb on + strand, within BACOVA_04367 at 261.392 kb on - strand, within BACOVA_04367 at 261.392 kb on - strand, within BACOVA_04367 at 261.473 kb on + strand at 261.570 kb on + strand at 261.570 kb on - strand at 261.571 kb on - strand at 261.575 kb on + strand at 261.595 kb on + strand at 261.596 kb on - strand at 261.597 kb on + strand at 261.622 kb on - strand at 261.624 kb on - strand at 261.647 kb on - strand at 261.647 kb on - strand at 261.697 kb on + strand at 261.698 kb on - strand at 261.809 kb on + strand at 261.809 kb on + strand at 261.836 kb on + strand, within BACOVA_04368 at 261.906 kb on + strand, within BACOVA_04368 at 261.907 kb on - strand, within BACOVA_04368 at 261.954 kb on - strand, within BACOVA_04368 at 261.963 kb on - strand, within BACOVA_04368 at 261.978 kb on + strand, within BACOVA_04368 at 261.979 kb on - strand, within BACOVA_04368 at 261.986 kb on + strand, within BACOVA_04368 at 262.019 kb on + strand, within BACOVA_04368 at 262.113 kb on + strand, within BACOVA_04368 at 262.113 kb on + strand, within BACOVA_04368 at 262.114 kb on - strand, within BACOVA_04368 at 262.124 kb on + strand, within BACOVA_04368 at 262.146 kb on + strand, within BACOVA_04368 at 262.179 kb on - strand, within BACOVA_04368 at 262.242 kb on + strand, within BACOVA_04368 at 262.243 kb on - strand, within BACOVA_04368 at 262.248 kb on - strand, within BACOVA_04368 at 262.292 kb on - strand, within BACOVA_04368 at 262.335 kb on - strand, within BACOVA_04368 at 262.335 kb on - strand, within BACOVA_04368 at 262.349 kb on + strand, within BACOVA_04368 at 262.364 kb on + strand, within BACOVA_04368 at 262.364 kb on + strand, within BACOVA_04368 at 262.365 kb on - strand, within BACOVA_04368 at 262.447 kb on - strand, within BACOVA_04368 at 262.468 kb on - strand, within BACOVA_04368 at 262.492 kb on - strand, within BACOVA_04368 at 262.504 kb on + strand, within BACOVA_04368 at 262.565 kb on + strand, within BACOVA_04368 at 262.572 kb on + strand, within BACOVA_04368 at 262.572 kb on + strand, within BACOVA_04368 at 262.573 kb on - strand, within BACOVA_04368 at 262.665 kb on + strand, within BACOVA_04368 at 262.686 kb on - strand, within BACOVA_04368 at 262.686 kb on - strand, within BACOVA_04368 at 262.718 kb on + strand, within BACOVA_04368 at 262.857 kb on - strand, within BACOVA_04368 at 262.861 kb on - strand, within BACOVA_04368 at 262.881 kb on + strand, within BACOVA_04368 at 262.914 kb on - strand, within BACOVA_04368 at 262.920 kb on + strand, within BACOVA_04368 at 262.921 kb on - strand, within BACOVA_04368 at 262.994 kb on - strand, within BACOVA_04368 at 263.023 kb on + strand, within BACOVA_04368 at 263.036 kb on + strand, within BACOVA_04368 at 263.039 kb on + strand, within BACOVA_04368 at 263.065 kb on - strand, within BACOVA_04368 at 263.065 kb on - strand, within BACOVA_04368 at 263.070 kb on - strand, within BACOVA_04368 at 263.071 kb on + strand, within BACOVA_04368 at 263.072 kb on - strand, within BACOVA_04368 at 263.084 kb on + strand, within BACOVA_04368 at 263.084 kb on + strand, within BACOVA_04368 at 263.087 kb on - strand, within BACOVA_04368 at 263.087 kb on - strand, within BACOVA_04368 at 263.087 kb on - strand, within BACOVA_04368 at 263.105 kb on + strand, within BACOVA_04368 at 263.210 kb on - strand, within BACOVA_04368 at 263.241 kb on - strand, within BACOVA_04368 at 263.258 kb on + strand, within BACOVA_04368 at 263.259 kb on - strand, within BACOVA_04368 at 263.260 kb on + strand, within BACOVA_04368 at 263.260 kb on + strand, within BACOVA_04368 at 263.260 kb on + strand, within BACOVA_04368 at 263.285 kb on + strand, within BACOVA_04368 at 263.286 kb on - strand, within BACOVA_04368 at 263.289 kb on + strand, within BACOVA_04368 at 263.290 kb on - strand, within BACOVA_04368 at 263.437 kb on + strand at 263.450 kb on + strand at 263.450 kb on + strand at 263.450 kb on + strand at 263.451 kb on - strand at 263.451 kb on - strand at 263.462 kb on + strand at 263.462 kb on + strand at 263.504 kb on - strand at 263.515 kb on - strand at 263.531 kb on + strand at 263.531 kb on + strand at 263.551 kb on - strand at 263.551 kb on - strand at 263.570 kb on + strand at 263.573 kb on + strand at 263.573 kb on + strand at 263.573 kb on + strand at 263.574 kb on - strand at 263.574 kb on - strand at 263.580 kb on + strand at 263.601 kb on + strand at 263.634 kb on + strand at 263.635 kb on - strand at 263.637 kb on + strand at 263.638 kb on - strand at 263.640 kb on + strand at 263.641 kb on - strand at 263.645 kb on + strand at 263.675 kb on + strand at 263.691 kb on - strand at 263.709 kb on + strand at 263.745 kb on + strand at 263.784 kb on + strand at 263.785 kb on - strand at 263.815 kb on + strand, within BACOVA_04369 at 263.816 kb on - strand, within BACOVA_04369 at 263.816 kb on - strand, within BACOVA_04369 at 263.824 kb on + strand, within BACOVA_04369 at 263.824 kb on + strand, within BACOVA_04369 at 263.852 kb on - strand, within BACOVA_04369 at 263.864 kb on + strand, within BACOVA_04369 at 264.029 kb on + strand, within BACOVA_04369 at 264.029 kb on + strand, within BACOVA_04369 at 264.030 kb on - strand, within BACOVA_04369 at 264.030 kb on - strand, within BACOVA_04369 at 264.030 kb on - strand, within BACOVA_04369 at 264.062 kb on + strand, within BACOVA_04369 at 264.063 kb on - strand, within BACOVA_04369 at 264.109 kb on + strand, within BACOVA_04369 at 264.117 kb on + strand, within BACOVA_04369 at 264.118 kb on - strand, within BACOVA_04369 at 264.147 kb on - strand, within BACOVA_04369 at 264.207 kb on - strand, within BACOVA_04369 at 264.255 kb on + strand, within BACOVA_04369 at 264.256 kb on - strand, within BACOVA_04369 at 264.256 kb on - strand, within BACOVA_04369 at 264.256 kb on - strand, within BACOVA_04369 at 264.260 kb on + strand, within BACOVA_04369 at 264.298 kb on - strand, within BACOVA_04369 at 264.419 kb on + strand at 264.444 kb on - strand at 264.499 kb on - strand at 264.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 260,636 - BACOVA_04364 0.69 +0.9 260,706 + BACOVA_04364 0.80 -1.4 260,713 + BACOVA_04364 0.81 +0.4 260,713 + BACOVA_04364 0.81 +3.3 260,714 - BACOVA_04364 0.82 +1.8 260,717 - BACOVA_04364 0.82 +1.2 260,727 - BACOVA_04364 0.84 +0.1 260,811 + +0.7 260,811 + -0.6 260,811 + -0.7 260,812 - +0.0 260,812 - +1.1 260,814 - +0.4 260,829 + -0.6 260,863 + BACOVA_04365 0.26 -0.6 260,934 + -0.1 260,935 - -0.1 260,974 + BACOVA_04366 0.39 +0.6 260,975 - BACOVA_04366 0.40 +0.4 260,975 - BACOVA_04366 0.40 +1.4 261,001 - BACOVA_04366 0.65 -1.1 261,052 + +0.3 261,061 - +0.1 261,176 + -0.2 261,177 - +1.4 261,186 + +0.4 261,186 + -0.3 261,187 - +1.9 261,188 + +0.5 261,188 + +0.7 261,188 + -0.5 261,189 - +0.9 261,189 - -2.8 261,190 + -0.4 261,191 - -2.9 261,197 - -1.4 261,210 + +0.1 261,210 + -0.1 261,217 + +0.4 261,219 + -0.9 261,254 - BACOVA_04367 0.22 -0.6 261,391 + BACOVA_04367 0.78 +0.3 261,392 - BACOVA_04367 0.78 -0.3 261,392 - BACOVA_04367 0.78 -1.1 261,473 + -1.4 261,570 + -1.0 261,570 - -0.5 261,571 - -0.2 261,575 + +2.9 261,595 + +0.4 261,596 - -0.0 261,597 + -2.3 261,622 - -0.5 261,624 - +0.4 261,647 - -1.4 261,647 - -1.0 261,697 + -1.3 261,698 - -1.6 261,809 + +0.3 261,809 + +0.1 261,836 + BACOVA_04368 0.10 +0.4 261,906 + BACOVA_04368 0.14 -0.9 261,907 - BACOVA_04368 0.14 +1.2 261,954 - BACOVA_04368 0.16 +0.6 261,963 - BACOVA_04368 0.16 +0.1 261,978 + BACOVA_04368 0.17 -2.3 261,979 - BACOVA_04368 0.17 +0.5 261,986 + BACOVA_04368 0.18 +3.9 262,019 + BACOVA_04368 0.19 +0.9 262,113 + BACOVA_04368 0.24 +0.4 262,113 + BACOVA_04368 0.24 -2.2 262,114 - BACOVA_04368 0.24 +0.3 262,124 + BACOVA_04368 0.25 +0.5 262,146 + BACOVA_04368 0.26 +1.5 262,179 - BACOVA_04368 0.27 -0.5 262,242 + BACOVA_04368 0.31 +0.1 262,243 - BACOVA_04368 0.31 +1.3 262,248 - BACOVA_04368 0.31 -1.4 262,292 - BACOVA_04368 0.33 +1.2 262,335 - BACOVA_04368 0.35 +1.8 262,335 - BACOVA_04368 0.35 +0.9 262,349 + BACOVA_04368 0.36 +2.4 262,364 + BACOVA_04368 0.37 +0.4 262,364 + BACOVA_04368 0.37 +0.4 262,365 - BACOVA_04368 0.37 -1.2 262,447 - BACOVA_04368 0.41 -0.4 262,468 - BACOVA_04368 0.42 -0.6 262,492 - BACOVA_04368 0.43 -1.0 262,504 + BACOVA_04368 0.44 -1.0 262,565 + BACOVA_04368 0.47 +1.9 262,572 + BACOVA_04368 0.47 -1.6 262,572 + BACOVA_04368 0.47 -0.7 262,573 - BACOVA_04368 0.47 -0.9 262,665 + BACOVA_04368 0.52 -0.1 262,686 - BACOVA_04368 0.53 +1.0 262,686 - BACOVA_04368 0.53 -0.3 262,718 + BACOVA_04368 0.55 -0.8 262,857 - BACOVA_04368 0.62 +2.4 262,861 - BACOVA_04368 0.62 +0.2 262,881 + BACOVA_04368 0.63 +0.1 262,914 - BACOVA_04368 0.64 -0.2 262,920 + BACOVA_04368 0.65 -1.1 262,921 - BACOVA_04368 0.65 -0.9 262,994 - BACOVA_04368 0.68 +3.0 263,023 + BACOVA_04368 0.70 +1.8 263,036 + BACOVA_04368 0.71 -0.9 263,039 + BACOVA_04368 0.71 -0.3 263,065 - BACOVA_04368 0.72 -2.0 263,065 - BACOVA_04368 0.72 +1.7 263,070 - BACOVA_04368 0.72 -1.5 263,071 + BACOVA_04368 0.72 +0.1 263,072 - BACOVA_04368 0.72 +1.0 263,084 + BACOVA_04368 0.73 +1.0 263,084 + BACOVA_04368 0.73 -0.5 263,087 - BACOVA_04368 0.73 +1.9 263,087 - BACOVA_04368 0.73 +0.1 263,087 - BACOVA_04368 0.73 +0.4 263,105 + BACOVA_04368 0.74 +0.4 263,210 - BACOVA_04368 0.79 -0.8 263,241 - BACOVA_04368 0.81 -0.3 263,258 + BACOVA_04368 0.82 +1.2 263,259 - BACOVA_04368 0.82 +1.0 263,260 + BACOVA_04368 0.82 -2.3 263,260 + BACOVA_04368 0.82 -0.6 263,260 + BACOVA_04368 0.82 -0.9 263,285 + BACOVA_04368 0.83 +0.1 263,286 - BACOVA_04368 0.83 -1.6 263,289 + BACOVA_04368 0.83 +0.7 263,290 - BACOVA_04368 0.83 -0.6 263,437 + -1.3 263,450 + -0.6 263,450 + +0.4 263,450 + -1.3 263,451 - -0.5 263,451 - -0.3 263,462 + -0.3 263,462 + -0.9 263,504 - +0.7 263,515 - +2.9 263,531 + -0.9 263,531 + -0.6 263,551 - -0.1 263,551 - -0.5 263,570 + -0.3 263,573 + -0.7 263,573 + -0.8 263,573 + +0.6 263,574 - -1.4 263,574 - -0.6 263,580 + -1.8 263,601 + -0.5 263,634 + -0.4 263,635 - -0.7 263,637 + -2.0 263,638 - +0.3 263,640 + +0.1 263,641 - -0.8 263,645 + +0.5 263,675 + -0.7 263,691 - -0.1 263,709 + -0.4 263,745 + -0.9 263,784 + +1.0 263,785 - -1.3 263,815 + BACOVA_04369 0.12 -1.6 263,816 - BACOVA_04369 0.12 -2.4 263,816 - BACOVA_04369 0.12 +0.2 263,824 + BACOVA_04369 0.13 +0.4 263,824 + BACOVA_04369 0.13 +1.8 263,852 - BACOVA_04369 0.17 -1.1 263,864 + BACOVA_04369 0.18 -1.7 264,029 + BACOVA_04369 0.40 -0.5 264,029 + BACOVA_04369 0.40 -0.2 264,030 - BACOVA_04369 0.40 -2.8 264,030 - BACOVA_04369 0.40 -0.4 264,030 - BACOVA_04369 0.40 -0.1 264,062 + BACOVA_04369 0.45 -0.7 264,063 - BACOVA_04369 0.45 +2.1 264,109 + BACOVA_04369 0.51 -2.0 264,117 + BACOVA_04369 0.52 -0.2 264,118 - BACOVA_04369 0.52 +1.4 264,147 - BACOVA_04369 0.56 -2.6 264,207 - BACOVA_04369 0.64 -1.4 264,255 + BACOVA_04369 0.70 +1.4 264,256 - BACOVA_04369 0.71 +4.0 264,256 - BACOVA_04369 0.71 -0.9 264,256 - BACOVA_04369 0.71 -0.7 264,260 + BACOVA_04369 0.71 -0.2 264,298 - BACOVA_04369 0.76 -0.6 264,419 + -0.1 264,444 - -0.6 264,499 - -0.6 264,502 - -0.1
Or see this region's nucleotide sequence