Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04190 and BACOVA_04191 overlap by 4 nucleotides BACOVA_04191 and BACOVA_04192 are separated by 277 nucleotides
BACOVA_04190: BACOVA_04190 - kelch repeat protein, at 67,116 to 68,183
_04190
BACOVA_04191: BACOVA_04191 - transcriptional regulator, GntR family, at 68,180 to 68,950
_04191
BACOVA_04192: BACOVA_04192 - YbaK/proline--tRNA ligase associated domain protein, at 69,228 to 69,791
_04192
Position (kb) 68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 67.181 kb on - strand at 67.196 kb on + strand at 67.282 kb on - strand, within BACOVA_04190 at 67.286 kb on + strand, within BACOVA_04190 at 67.293 kb on - strand, within BACOVA_04190 at 67.317 kb on - strand, within BACOVA_04190 at 67.323 kb on + strand, within BACOVA_04190 at 67.350 kb on + strand, within BACOVA_04190 at 67.350 kb on + strand, within BACOVA_04190 at 67.350 kb on + strand, within BACOVA_04190 at 67.350 kb on + strand, within BACOVA_04190 at 67.350 kb on + strand, within BACOVA_04190 at 67.351 kb on - strand, within BACOVA_04190 at 67.351 kb on - strand, within BACOVA_04190 at 67.374 kb on - strand, within BACOVA_04190 at 67.438 kb on + strand, within BACOVA_04190 at 67.439 kb on - strand, within BACOVA_04190 at 67.440 kb on + strand, within BACOVA_04190 at 67.440 kb on + strand, within BACOVA_04190 at 67.440 kb on + strand, within BACOVA_04190 at 67.441 kb on - strand, within BACOVA_04190 at 67.441 kb on - strand, within BACOVA_04190 at 67.454 kb on + strand, within BACOVA_04190 at 67.455 kb on - strand, within BACOVA_04190 at 67.461 kb on + strand, within BACOVA_04190 at 67.483 kb on + strand, within BACOVA_04190 at 67.484 kb on - strand, within BACOVA_04190 at 67.537 kb on + strand, within BACOVA_04190 at 67.596 kb on + strand, within BACOVA_04190 at 67.607 kb on + strand, within BACOVA_04190 at 67.640 kb on + strand, within BACOVA_04190 at 67.663 kb on - strand, within BACOVA_04190 at 67.667 kb on + strand, within BACOVA_04190 at 67.667 kb on + strand, within BACOVA_04190 at 67.667 kb on + strand, within BACOVA_04190 at 67.667 kb on + strand, within BACOVA_04190 at 67.667 kb on + strand, within BACOVA_04190 at 67.668 kb on - strand, within BACOVA_04190 at 67.668 kb on - strand, within BACOVA_04190 at 67.668 kb on - strand, within BACOVA_04190 at 67.727 kb on + strand, within BACOVA_04190 at 67.737 kb on + strand, within BACOVA_04190 at 67.738 kb on - strand, within BACOVA_04190 at 67.741 kb on - strand, within BACOVA_04190 at 67.793 kb on + strand, within BACOVA_04190 at 67.794 kb on - strand, within BACOVA_04190 at 67.811 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.815 kb on + strand, within BACOVA_04190 at 67.816 kb on - strand, within BACOVA_04190 at 67.816 kb on - strand, within BACOVA_04190 at 67.816 kb on - strand, within BACOVA_04190 at 67.818 kb on + strand, within BACOVA_04190 at 67.837 kb on - strand, within BACOVA_04190 at 67.849 kb on + strand, within BACOVA_04190 at 67.892 kb on + strand, within BACOVA_04190 at 67.893 kb on - strand, within BACOVA_04190 at 67.894 kb on - strand, within BACOVA_04190 at 67.897 kb on - strand, within BACOVA_04190 at 67.909 kb on + strand, within BACOVA_04190 at 67.909 kb on + strand, within BACOVA_04190 at 67.910 kb on - strand, within BACOVA_04190 at 67.913 kb on + strand, within BACOVA_04190 at 67.913 kb on + strand, within BACOVA_04190 at 67.914 kb on - strand, within BACOVA_04190 at 67.915 kb on + strand, within BACOVA_04190 at 67.915 kb on + strand, within BACOVA_04190 at 67.918 kb on - strand, within BACOVA_04190 at 67.958 kb on - strand, within BACOVA_04190 at 68.004 kb on + strand, within BACOVA_04190 at 68.005 kb on - strand, within BACOVA_04190 at 68.005 kb on - strand, within BACOVA_04190 at 68.007 kb on + strand, within BACOVA_04190 at 68.008 kb on - strand, within BACOVA_04190 at 68.017 kb on + strand, within BACOVA_04190 at 68.054 kb on + strand, within BACOVA_04190 at 68.055 kb on - strand, within BACOVA_04190 at 68.091 kb on + strand at 68.091 kb on + strand at 68.092 kb on - strand at 68.099 kb on + strand at 68.100 kb on - strand at 68.132 kb on + strand at 68.133 kb on - strand at 68.135 kb on - strand at 68.156 kb on - strand at 68.185 kb on + strand at 68.185 kb on + strand at 68.186 kb on - strand at 68.188 kb on + strand at 68.188 kb on + strand at 68.188 kb on + strand at 68.188 kb on + strand at 68.188 kb on + strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.189 kb on - strand at 68.245 kb on + strand at 68.255 kb on - strand at 68.256 kb on + strand at 68.314 kb on + strand, within BACOVA_04191 at 68.314 kb on + strand, within BACOVA_04191 at 68.338 kb on + strand, within BACOVA_04191 at 68.339 kb on - strand, within BACOVA_04191 at 68.339 kb on - strand, within BACOVA_04191 at 68.356 kb on + strand, within BACOVA_04191 at 68.368 kb on + strand, within BACOVA_04191 at 68.369 kb on - strand, within BACOVA_04191 at 68.381 kb on + strand, within BACOVA_04191 at 68.409 kb on + strand, within BACOVA_04191 at 68.417 kb on + strand, within BACOVA_04191 at 68.420 kb on - strand, within BACOVA_04191 at 68.420 kb on - strand, within BACOVA_04191 at 68.450 kb on + strand, within BACOVA_04191 at 68.450 kb on + strand, within BACOVA_04191 at 68.456 kb on - strand, within BACOVA_04191 at 68.473 kb on - strand, within BACOVA_04191 at 68.482 kb on + strand, within BACOVA_04191 at 68.566 kb on + strand, within BACOVA_04191 at 68.567 kb on - strand, within BACOVA_04191 at 68.567 kb on - strand, within BACOVA_04191 at 68.580 kb on - strand, within BACOVA_04191 at 68.584 kb on + strand, within BACOVA_04191 at 68.675 kb on + strand, within BACOVA_04191 at 68.676 kb on - strand, within BACOVA_04191 at 68.676 kb on - strand, within BACOVA_04191 at 68.805 kb on - strand, within BACOVA_04191 at 68.871 kb on + strand, within BACOVA_04191 at 68.875 kb on + strand at 68.875 kb on + strand at 68.875 kb on + strand at 68.876 kb on - strand at 68.876 kb on - strand at 68.879 kb on + strand at 68.880 kb on - strand at 68.932 kb on + strand at 68.935 kb on + strand at 68.935 kb on + strand at 68.986 kb on + strand at 69.009 kb on - strand at 69.020 kb on - strand at 69.068 kb on - strand at 69.121 kb on - strand at 69.121 kb on - strand at 69.133 kb on + strand at 69.133 kb on + strand at 69.137 kb on + strand at 69.137 kb on + strand at 69.140 kb on + strand at 69.161 kb on + strand at 69.162 kb on - strand at 69.213 kb on - strand at 69.227 kb on + strand at 69.227 kb on + strand at 69.234 kb on - strand at 69.238 kb on + strand at 69.239 kb on - strand at 69.245 kb on + strand at 69.246 kb on - strand at 69.246 kb on - strand at 69.274 kb on - strand at 69.295 kb on - strand, within BACOVA_04192 at 69.322 kb on - strand, within BACOVA_04192 at 69.322 kb on - strand, within BACOVA_04192 at 69.403 kb on + strand, within BACOVA_04192 at 69.422 kb on + strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.423 kb on - strand, within BACOVA_04192 at 69.452 kb on + strand, within BACOVA_04192 at 69.453 kb on - strand, within BACOVA_04192 at 69.478 kb on + strand, within BACOVA_04192 at 69.526 kb on + strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.527 kb on - strand, within BACOVA_04192 at 69.530 kb on + strand, within BACOVA_04192 at 69.531 kb on - strand, within BACOVA_04192 at 69.582 kb on - strand, within BACOVA_04192 at 69.607 kb on + strand, within BACOVA_04192 at 69.608 kb on - strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.614 kb on + strand, within BACOVA_04192 at 69.615 kb on - strand, within BACOVA_04192 at 69.623 kb on + strand, within BACOVA_04192 at 69.637 kb on + strand, within BACOVA_04192 at 69.638 kb on - strand, within BACOVA_04192 at 69.654 kb on - strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.675 kb on + strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.676 kb on - strand, within BACOVA_04192 at 69.677 kb on + strand, within BACOVA_04192 at 69.678 kb on - strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.679 kb on + strand, within BACOVA_04192 at 69.680 kb on - strand, within BACOVA_04192 at 69.697 kb on + strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.698 kb on - strand, within BACOVA_04192 at 69.743 kb on - strand at 69.743 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.746 kb on - strand at 69.789 kb on + strand at 69.836 kb on + strand at 69.837 kb on - strand at 69.858 kb on + strand at 69.859 kb on - strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.863 kb on + strand at 69.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 67,181 - -2.3 67,196 + -0.7 67,282 - BACOVA_04190 0.16 -0.9 67,286 + BACOVA_04190 0.16 +0.3 67,293 - BACOVA_04190 0.17 +1.7 67,317 - BACOVA_04190 0.19 -1.5 67,323 + BACOVA_04190 0.19 +2.4 67,350 + BACOVA_04190 0.22 -0.6 67,350 + BACOVA_04190 0.22 -1.1 67,350 + BACOVA_04190 0.22 -0.6 67,350 + BACOVA_04190 0.22 -0.9 67,350 + BACOVA_04190 0.22 +1.2 67,351 - BACOVA_04190 0.22 -0.9 67,351 - BACOVA_04190 0.22 -1.1 67,374 - BACOVA_04190 0.24 +1.0 67,438 + BACOVA_04190 0.30 +1.0 67,439 - BACOVA_04190 0.30 -1.0 67,440 + BACOVA_04190 0.30 +0.6 67,440 + BACOVA_04190 0.30 -0.3 67,440 + BACOVA_04190 0.30 -0.4 67,441 - BACOVA_04190 0.30 -1.1 67,441 - BACOVA_04190 0.30 -0.1 67,454 + BACOVA_04190 0.32 -2.3 67,455 - BACOVA_04190 0.32 -0.9 67,461 + BACOVA_04190 0.32 +0.1 67,483 + BACOVA_04190 0.34 -0.6 67,484 - BACOVA_04190 0.34 -0.3 67,537 + BACOVA_04190 0.39 -0.4 67,596 + BACOVA_04190 0.45 -1.3 67,607 + BACOVA_04190 0.46 +0.7 67,640 + BACOVA_04190 0.49 -0.6 67,663 - BACOVA_04190 0.51 +1.0 67,667 + BACOVA_04190 0.52 -0.3 67,667 + BACOVA_04190 0.52 +0.4 67,667 + BACOVA_04190 0.52 +0.1 67,667 + BACOVA_04190 0.52 +1.4 67,667 + BACOVA_04190 0.52 +1.3 67,668 - BACOVA_04190 0.52 +0.4 67,668 - BACOVA_04190 0.52 -0.6 67,668 - BACOVA_04190 0.52 -0.1 67,727 + BACOVA_04190 0.57 +1.4 67,737 + BACOVA_04190 0.58 -0.4 67,738 - BACOVA_04190 0.58 -0.0 67,741 - BACOVA_04190 0.59 +0.4 67,793 + BACOVA_04190 0.63 -0.0 67,794 - BACOVA_04190 0.63 -1.0 67,811 + BACOVA_04190 0.65 -0.4 67,815 + BACOVA_04190 0.65 -0.8 67,815 + BACOVA_04190 0.65 +1.5 67,815 + BACOVA_04190 0.65 +2.7 67,815 + BACOVA_04190 0.65 +0.7 67,815 + BACOVA_04190 0.65 +1.4 67,815 + BACOVA_04190 0.65 +0.1 67,816 - BACOVA_04190 0.66 -1.1 67,816 - BACOVA_04190 0.66 +1.1 67,816 - BACOVA_04190 0.66 +1.1 67,818 + BACOVA_04190 0.66 -0.5 67,837 - BACOVA_04190 0.68 +1.3 67,849 + BACOVA_04190 0.69 -1.4 67,892 + BACOVA_04190 0.73 -0.1 67,893 - BACOVA_04190 0.73 -0.6 67,894 - BACOVA_04190 0.73 -2.3 67,897 - BACOVA_04190 0.73 +0.2 67,909 + BACOVA_04190 0.74 +1.9 67,909 + BACOVA_04190 0.74 -0.1 67,910 - BACOVA_04190 0.74 -2.9 67,913 + BACOVA_04190 0.75 +0.4 67,913 + BACOVA_04190 0.75 -1.4 67,914 - BACOVA_04190 0.75 +0.4 67,915 + BACOVA_04190 0.75 -1.4 67,915 + BACOVA_04190 0.75 -0.4 67,918 - BACOVA_04190 0.75 -1.6 67,958 - BACOVA_04190 0.79 +0.7 68,004 + BACOVA_04190 0.83 +0.3 68,005 - BACOVA_04190 0.83 -2.8 68,005 - BACOVA_04190 0.83 +0.4 68,007 + BACOVA_04190 0.83 +0.4 68,008 - BACOVA_04190 0.84 -2.4 68,017 + BACOVA_04190 0.84 -1.1 68,054 + BACOVA_04190 0.88 -1.4 68,055 - BACOVA_04190 0.88 -0.9 68,091 + +1.0 68,091 + -0.6 68,092 - -0.6 68,099 + +0.3 68,100 - -0.1 68,132 + +0.3 68,133 - +0.7 68,135 - -0.7 68,156 - -0.7 68,185 + +1.9 68,185 + -1.1 68,186 - -0.6 68,188 + +1.8 68,188 + +1.4 68,188 + -0.9 68,188 + +1.3 68,188 + +0.1 68,189 - +0.1 68,189 - -2.0 68,189 - -0.1 68,189 - +0.7 68,189 - -0.3 68,189 - -0.9 68,189 - -0.1 68,245 + -0.3 68,255 - +1.8 68,256 + +0.9 68,314 + BACOVA_04191 0.17 +0.4 68,314 + BACOVA_04191 0.17 +0.6 68,338 + BACOVA_04191 0.20 +0.4 68,339 - BACOVA_04191 0.21 -2.0 68,339 - BACOVA_04191 0.21 -2.1 68,356 + BACOVA_04191 0.23 -0.1 68,368 + BACOVA_04191 0.24 +0.3 68,369 - BACOVA_04191 0.25 -0.9 68,381 + BACOVA_04191 0.26 -1.5 68,409 + BACOVA_04191 0.30 +0.9 68,417 + BACOVA_04191 0.31 +1.7 68,420 - BACOVA_04191 0.31 -0.1 68,420 - BACOVA_04191 0.31 -0.6 68,450 + BACOVA_04191 0.35 +0.5 68,450 + BACOVA_04191 0.35 -1.0 68,456 - BACOVA_04191 0.36 -1.1 68,473 - BACOVA_04191 0.38 -1.1 68,482 + BACOVA_04191 0.39 -0.9 68,566 + BACOVA_04191 0.50 -1.0 68,567 - BACOVA_04191 0.50 -1.4 68,567 - BACOVA_04191 0.50 +0.2 68,580 - BACOVA_04191 0.52 -0.9 68,584 + BACOVA_04191 0.52 +2.1 68,675 + BACOVA_04191 0.64 -0.4 68,676 - BACOVA_04191 0.64 +1.3 68,676 - BACOVA_04191 0.64 -0.7 68,805 - BACOVA_04191 0.81 -0.9 68,871 + BACOVA_04191 0.90 -0.5 68,875 + +0.3 68,875 + -0.4 68,875 + -0.2 68,876 - -1.4 68,876 - -1.2 68,879 + +2.8 68,880 - -0.8 68,932 + +2.7 68,935 + -0.2 68,935 + -1.9 68,986 + +0.9 69,009 - +2.8 69,020 - -0.2 69,068 - -0.1 69,121 - +0.6 69,121 - -0.6 69,133 + +0.8 69,133 + -0.0 69,137 + -0.1 69,137 + -1.6 69,140 + -0.1 69,161 + -0.1 69,162 - -2.4 69,213 - -0.1 69,227 + -0.3 69,227 + +2.0 69,234 - -0.1 69,238 + +0.2 69,239 - -1.9 69,245 + +1.6 69,246 - -0.6 69,246 - -0.8 69,274 - -0.6 69,295 - BACOVA_04192 0.12 -0.4 69,322 - BACOVA_04192 0.17 -1.6 69,322 - BACOVA_04192 0.17 -0.0 69,403 + BACOVA_04192 0.31 -2.4 69,422 + BACOVA_04192 0.34 +0.4 69,423 - BACOVA_04192 0.35 -0.7 69,423 - BACOVA_04192 0.35 -0.6 69,452 + BACOVA_04192 0.40 +2.1 69,453 - BACOVA_04192 0.40 -1.0 69,478 + BACOVA_04192 0.44 -1.6 69,526 + BACOVA_04192 0.53 -0.6 69,527 - BACOVA_04192 0.53 -0.3 69,527 - BACOVA_04192 0.53 +0.2 69,527 - BACOVA_04192 0.53 -0.0 69,530 + BACOVA_04192 0.54 +0.9 69,531 - BACOVA_04192 0.54 -0.9 69,582 - BACOVA_04192 0.63 -0.4 69,607 + BACOVA_04192 0.67 +0.9 69,608 - BACOVA_04192 0.67 +0.1 69,614 + BACOVA_04192 0.68 +0.2 69,614 + BACOVA_04192 0.68 -0.3 69,615 - BACOVA_04192 0.69 +0.1 69,623 + BACOVA_04192 0.70 -2.3 69,637 + BACOVA_04192 0.73 +0.3 69,638 - BACOVA_04192 0.73 +0.0 69,654 - BACOVA_04192 0.76 -0.6 69,675 + BACOVA_04192 0.79 +1.4 69,675 + BACOVA_04192 0.79 -2.4 69,675 + BACOVA_04192 0.79 -1.0 69,676 - BACOVA_04192 0.79 -0.3 69,676 - BACOVA_04192 0.79 -0.1 69,676 - BACOVA_04192 0.79 +1.9 69,677 + BACOVA_04192 0.80 -0.0 69,678 - BACOVA_04192 0.80 +1.4 69,679 + BACOVA_04192 0.80 -0.6 69,679 + BACOVA_04192 0.80 -3.1 69,679 + BACOVA_04192 0.80 +3.3 69,679 + BACOVA_04192 0.80 +0.0 69,680 - BACOVA_04192 0.80 +1.1 69,697 + BACOVA_04192 0.83 -1.6 69,698 - BACOVA_04192 0.83 -0.3 69,698 - BACOVA_04192 0.83 +0.4 69,743 - +0.9 69,743 - +1.9 69,746 - -0.9 69,746 - -0.4 69,746 - -0.3 69,789 + +0.4 69,836 + -0.8 69,837 - +1.6 69,858 + -0.1 69,859 - -0.9 69,863 + -0.3 69,863 + -1.3 69,863 + -1.3 69,864 - -1.7
Or see this region's nucleotide sequence