Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04190

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04189 and BACOVA_04190 are separated by 35 nucleotidesBACOVA_04190 and BACOVA_04191 overlap by 4 nucleotides BACOVA_04189: BACOVA_04189 - putative N-acetylneuraminate lyase, at 66,169 to 67,080 _04189 BACOVA_04190: BACOVA_04190 - kelch repeat protein, at 67,116 to 68,183 _04190 BACOVA_04191: BACOVA_04191 - transcriptional regulator, GntR family, at 68,180 to 68,950 _04191 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 66.121 kb on - strandat 66.144 kb on + strandat 66.145 kb on - strandat 66.188 kb on - strandat 66.189 kb on + strandat 66.190 kb on - strandat 66.208 kb on + strandat 66.270 kb on + strand, within BACOVA_04189at 66.271 kb on - strand, within BACOVA_04189at 66.274 kb on + strand, within BACOVA_04189at 66.317 kb on + strand, within BACOVA_04189at 66.321 kb on + strand, within BACOVA_04189at 66.324 kb on + strand, within BACOVA_04189at 66.343 kb on + strand, within BACOVA_04189at 66.420 kb on + strand, within BACOVA_04189at 66.421 kb on - strand, within BACOVA_04189at 66.424 kb on + strand, within BACOVA_04189at 66.425 kb on - strand, within BACOVA_04189at 66.427 kb on - strand, within BACOVA_04189at 66.428 kb on + strand, within BACOVA_04189at 66.428 kb on + strand, within BACOVA_04189at 66.428 kb on + strand, within BACOVA_04189at 66.429 kb on - strand, within BACOVA_04189at 66.432 kb on + strand, within BACOVA_04189at 66.432 kb on + strand, within BACOVA_04189at 66.433 kb on - strand, within BACOVA_04189at 66.434 kb on + strand, within BACOVA_04189at 66.438 kb on + strand, within BACOVA_04189at 66.495 kb on - strand, within BACOVA_04189at 66.505 kb on + strand, within BACOVA_04189at 66.506 kb on - strand, within BACOVA_04189at 66.532 kb on + strand, within BACOVA_04189at 66.533 kb on - strand, within BACOVA_04189at 66.559 kb on - strand, within BACOVA_04189at 66.568 kb on - strand, within BACOVA_04189at 66.568 kb on - strand, within BACOVA_04189at 66.573 kb on + strand, within BACOVA_04189at 66.573 kb on + strand, within BACOVA_04189at 66.592 kb on + strand, within BACOVA_04189at 66.646 kb on - strand, within BACOVA_04189at 66.657 kb on + strand, within BACOVA_04189at 66.658 kb on - strand, within BACOVA_04189at 66.658 kb on - strand, within BACOVA_04189at 66.660 kb on + strand, within BACOVA_04189at 66.663 kb on - strand, within BACOVA_04189at 66.666 kb on - strand, within BACOVA_04189at 66.669 kb on - strand, within BACOVA_04189at 66.700 kb on - strand, within BACOVA_04189at 66.700 kb on - strand, within BACOVA_04189at 66.700 kb on - strand, within BACOVA_04189at 66.718 kb on + strand, within BACOVA_04189at 66.728 kb on - strand, within BACOVA_04189at 66.769 kb on - strand, within BACOVA_04189at 66.781 kb on + strand, within BACOVA_04189at 66.836 kb on - strand, within BACOVA_04189at 66.836 kb on - strand, within BACOVA_04189at 66.836 kb on - strand, within BACOVA_04189at 66.950 kb on - strand, within BACOVA_04189at 66.960 kb on + strand, within BACOVA_04189at 66.973 kb on + strand, within BACOVA_04189at 66.973 kb on + strand, within BACOVA_04189at 66.986 kb on + strand, within BACOVA_04189at 66.986 kb on + strand, within BACOVA_04189at 66.996 kb on + strandat 67.004 kb on - strandat 67.010 kb on - strandat 67.081 kb on - strandat 67.090 kb on - strandat 67.101 kb on + strandat 67.161 kb on + strandat 67.181 kb on - strandat 67.196 kb on + strandat 67.282 kb on - strand, within BACOVA_04190at 67.286 kb on + strand, within BACOVA_04190at 67.293 kb on - strand, within BACOVA_04190at 67.317 kb on - strand, within BACOVA_04190at 67.323 kb on + strand, within BACOVA_04190at 67.350 kb on + strand, within BACOVA_04190at 67.350 kb on + strand, within BACOVA_04190at 67.350 kb on + strand, within BACOVA_04190at 67.350 kb on + strand, within BACOVA_04190at 67.350 kb on + strand, within BACOVA_04190at 67.351 kb on - strand, within BACOVA_04190at 67.351 kb on - strand, within BACOVA_04190at 67.374 kb on - strand, within BACOVA_04190at 67.438 kb on + strand, within BACOVA_04190at 67.439 kb on - strand, within BACOVA_04190at 67.440 kb on + strand, within BACOVA_04190at 67.440 kb on + strand, within BACOVA_04190at 67.440 kb on + strand, within BACOVA_04190at 67.441 kb on - strand, within BACOVA_04190at 67.441 kb on - strand, within BACOVA_04190at 67.454 kb on + strand, within BACOVA_04190at 67.455 kb on - strand, within BACOVA_04190at 67.461 kb on + strand, within BACOVA_04190at 67.483 kb on + strand, within BACOVA_04190at 67.484 kb on - strand, within BACOVA_04190at 67.537 kb on + strand, within BACOVA_04190at 67.596 kb on + strand, within BACOVA_04190at 67.607 kb on + strand, within BACOVA_04190at 67.640 kb on + strand, within BACOVA_04190at 67.663 kb on - strand, within BACOVA_04190at 67.667 kb on + strand, within BACOVA_04190at 67.667 kb on + strand, within BACOVA_04190at 67.667 kb on + strand, within BACOVA_04190at 67.667 kb on + strand, within BACOVA_04190at 67.667 kb on + strand, within BACOVA_04190at 67.668 kb on - strand, within BACOVA_04190at 67.668 kb on - strand, within BACOVA_04190at 67.668 kb on - strand, within BACOVA_04190at 67.727 kb on + strand, within BACOVA_04190at 67.737 kb on + strand, within BACOVA_04190at 67.738 kb on - strand, within BACOVA_04190at 67.741 kb on - strand, within BACOVA_04190at 67.793 kb on + strand, within BACOVA_04190at 67.794 kb on - strand, within BACOVA_04190at 67.811 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.815 kb on + strand, within BACOVA_04190at 67.816 kb on - strand, within BACOVA_04190at 67.816 kb on - strand, within BACOVA_04190at 67.816 kb on - strand, within BACOVA_04190at 67.818 kb on + strand, within BACOVA_04190at 67.837 kb on - strand, within BACOVA_04190at 67.849 kb on + strand, within BACOVA_04190at 67.892 kb on + strand, within BACOVA_04190at 67.893 kb on - strand, within BACOVA_04190at 67.894 kb on - strand, within BACOVA_04190at 67.897 kb on - strand, within BACOVA_04190at 67.909 kb on + strand, within BACOVA_04190at 67.909 kb on + strand, within BACOVA_04190at 67.910 kb on - strand, within BACOVA_04190at 67.913 kb on + strand, within BACOVA_04190at 67.913 kb on + strand, within BACOVA_04190at 67.914 kb on - strand, within BACOVA_04190at 67.915 kb on + strand, within BACOVA_04190at 67.915 kb on + strand, within BACOVA_04190at 67.918 kb on - strand, within BACOVA_04190at 67.958 kb on - strand, within BACOVA_04190at 68.004 kb on + strand, within BACOVA_04190at 68.005 kb on - strand, within BACOVA_04190at 68.005 kb on - strand, within BACOVA_04190at 68.007 kb on + strand, within BACOVA_04190at 68.008 kb on - strand, within BACOVA_04190at 68.017 kb on + strand, within BACOVA_04190at 68.054 kb on + strand, within BACOVA_04190at 68.055 kb on - strand, within BACOVA_04190at 68.091 kb on + strandat 68.091 kb on + strandat 68.092 kb on - strandat 68.099 kb on + strandat 68.100 kb on - strandat 68.132 kb on + strandat 68.133 kb on - strandat 68.135 kb on - strandat 68.156 kb on - strandat 68.185 kb on + strandat 68.185 kb on + strandat 68.186 kb on - strandat 68.188 kb on + strandat 68.188 kb on + strandat 68.188 kb on + strandat 68.188 kb on + strandat 68.188 kb on + strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.189 kb on - strandat 68.245 kb on + strandat 68.255 kb on - strandat 68.256 kb on + strandat 68.314 kb on + strand, within BACOVA_04191at 68.314 kb on + strand, within BACOVA_04191at 68.338 kb on + strand, within BACOVA_04191at 68.339 kb on - strand, within BACOVA_04191at 68.339 kb on - strand, within BACOVA_04191at 68.356 kb on + strand, within BACOVA_04191at 68.368 kb on + strand, within BACOVA_04191at 68.369 kb on - strand, within BACOVA_04191at 68.381 kb on + strand, within BACOVA_04191at 68.409 kb on + strand, within BACOVA_04191at 68.417 kb on + strand, within BACOVA_04191at 68.420 kb on - strand, within BACOVA_04191at 68.420 kb on - strand, within BACOVA_04191at 68.450 kb on + strand, within BACOVA_04191at 68.450 kb on + strand, within BACOVA_04191at 68.456 kb on - strand, within BACOVA_04191at 68.473 kb on - strand, within BACOVA_04191at 68.482 kb on + strand, within BACOVA_04191at 68.566 kb on + strand, within BACOVA_04191at 68.567 kb on - strand, within BACOVA_04191at 68.567 kb on - strand, within BACOVA_04191at 68.580 kb on - strand, within BACOVA_04191at 68.584 kb on + strand, within BACOVA_04191at 68.675 kb on + strand, within BACOVA_04191at 68.676 kb on - strand, within BACOVA_04191at 68.676 kb on - strand, within BACOVA_04191at 68.805 kb on - strand, within BACOVA_04191at 68.871 kb on + strand, within BACOVA_04191at 68.875 kb on + strandat 68.875 kb on + strandat 68.875 kb on + strandat 68.876 kb on - strandat 68.876 kb on - strandat 68.879 kb on + strandat 68.880 kb on - strandat 68.932 kb on + strandat 68.935 kb on + strandat 68.935 kb on + strandat 68.986 kb on + strandat 69.009 kb on - strandat 69.020 kb on - strandat 69.068 kb on - strandat 69.121 kb on - strandat 69.121 kb on - strandat 69.133 kb on + strandat 69.133 kb on + strandat 69.137 kb on + strandat 69.137 kb on + strandat 69.140 kb on + strandat 69.161 kb on + strandat 69.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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66,121 - -0.3
66,144 + -2.6
66,145 - +0.3
66,188 - -1.4
66,189 + +1.4
66,190 - +0.8
66,208 + -0.8
66,270 + BACOVA_04189 0.11 -0.6
66,271 - BACOVA_04189 0.11 +0.6
66,274 + BACOVA_04189 0.12 +0.7
66,317 + BACOVA_04189 0.16 -0.6
66,321 + BACOVA_04189 0.17 +0.4
66,324 + BACOVA_04189 0.17 -0.6
66,343 + BACOVA_04189 0.19 +0.5
66,420 + BACOVA_04189 0.28 -1.0
66,421 - BACOVA_04189 0.28 -1.9
66,424 + BACOVA_04189 0.28 -1.1
66,425 - BACOVA_04189 0.28 +0.9
66,427 - BACOVA_04189 0.28 -0.9
66,428 + BACOVA_04189 0.28 -0.1
66,428 + BACOVA_04189 0.28 -1.9
66,428 + BACOVA_04189 0.28 -1.4
66,429 - BACOVA_04189 0.29 -0.7
66,432 + BACOVA_04189 0.29 +2.3
66,432 + BACOVA_04189 0.29 +1.6
66,433 - BACOVA_04189 0.29 +0.6
66,434 + BACOVA_04189 0.29 -3.6
66,438 + BACOVA_04189 0.29 +3.4
66,495 - BACOVA_04189 0.36 -0.9
66,505 + BACOVA_04189 0.37 -0.6
66,506 - BACOVA_04189 0.37 +2.2
66,532 + BACOVA_04189 0.40 -0.2
66,533 - BACOVA_04189 0.40 -1.2
66,559 - BACOVA_04189 0.43 +1.0
66,568 - BACOVA_04189 0.44 +2.4
66,568 - BACOVA_04189 0.44 -2.1
66,573 + BACOVA_04189 0.44 +1.5
66,573 + BACOVA_04189 0.44 +2.0
66,592 + BACOVA_04189 0.46 -0.1
66,646 - BACOVA_04189 0.52 -0.5
66,657 + BACOVA_04189 0.54 +2.3
66,658 - BACOVA_04189 0.54 +0.4
66,658 - BACOVA_04189 0.54 +0.1
66,660 + BACOVA_04189 0.54 -1.1
66,663 - BACOVA_04189 0.54 -1.6
66,666 - BACOVA_04189 0.54 -0.6
66,669 - BACOVA_04189 0.55 +0.7
66,700 - BACOVA_04189 0.58 -0.1
66,700 - BACOVA_04189 0.58 -0.3
66,700 - BACOVA_04189 0.58 -0.9
66,718 + BACOVA_04189 0.60 -0.6
66,728 - BACOVA_04189 0.61 +1.4
66,769 - BACOVA_04189 0.66 +2.0
66,781 + BACOVA_04189 0.67 -0.6
66,836 - BACOVA_04189 0.73 -0.7
66,836 - BACOVA_04189 0.73 -0.9
66,836 - BACOVA_04189 0.73 -0.6
66,950 - BACOVA_04189 0.86 +0.9
66,960 + BACOVA_04189 0.87 +0.2
66,973 + BACOVA_04189 0.88 -1.0
66,973 + BACOVA_04189 0.88 -1.1
66,986 + BACOVA_04189 0.90 -0.6
66,986 + BACOVA_04189 0.90 -3.3
66,996 + -0.1
67,004 - +0.2
67,010 - +0.7
67,081 - -1.1
67,090 - +1.1
67,101 + -0.4
67,161 + +1.7
67,181 - -2.3
67,196 + -0.7
67,282 - BACOVA_04190 0.16 -0.9
67,286 + BACOVA_04190 0.16 +0.3
67,293 - BACOVA_04190 0.17 +1.7
67,317 - BACOVA_04190 0.19 -1.5
67,323 + BACOVA_04190 0.19 +2.4
67,350 + BACOVA_04190 0.22 -0.6
67,350 + BACOVA_04190 0.22 -1.1
67,350 + BACOVA_04190 0.22 -0.6
67,350 + BACOVA_04190 0.22 -0.9
67,350 + BACOVA_04190 0.22 +1.2
67,351 - BACOVA_04190 0.22 -0.9
67,351 - BACOVA_04190 0.22 -1.1
67,374 - BACOVA_04190 0.24 +1.0
67,438 + BACOVA_04190 0.30 +1.0
67,439 - BACOVA_04190 0.30 -1.0
67,440 + BACOVA_04190 0.30 +0.6
67,440 + BACOVA_04190 0.30 -0.3
67,440 + BACOVA_04190 0.30 -0.4
67,441 - BACOVA_04190 0.30 -1.1
67,441 - BACOVA_04190 0.30 -0.1
67,454 + BACOVA_04190 0.32 -2.3
67,455 - BACOVA_04190 0.32 -0.9
67,461 + BACOVA_04190 0.32 +0.1
67,483 + BACOVA_04190 0.34 -0.6
67,484 - BACOVA_04190 0.34 -0.3
67,537 + BACOVA_04190 0.39 -0.4
67,596 + BACOVA_04190 0.45 -1.3
67,607 + BACOVA_04190 0.46 +0.7
67,640 + BACOVA_04190 0.49 -0.6
67,663 - BACOVA_04190 0.51 +1.0
67,667 + BACOVA_04190 0.52 -0.3
67,667 + BACOVA_04190 0.52 +0.4
67,667 + BACOVA_04190 0.52 +0.1
67,667 + BACOVA_04190 0.52 +1.4
67,667 + BACOVA_04190 0.52 +1.3
67,668 - BACOVA_04190 0.52 +0.4
67,668 - BACOVA_04190 0.52 -0.6
67,668 - BACOVA_04190 0.52 -0.1
67,727 + BACOVA_04190 0.57 +1.4
67,737 + BACOVA_04190 0.58 -0.4
67,738 - BACOVA_04190 0.58 -0.0
67,741 - BACOVA_04190 0.59 +0.4
67,793 + BACOVA_04190 0.63 -0.0
67,794 - BACOVA_04190 0.63 -1.0
67,811 + BACOVA_04190 0.65 -0.4
67,815 + BACOVA_04190 0.65 -0.8
67,815 + BACOVA_04190 0.65 +1.5
67,815 + BACOVA_04190 0.65 +2.7
67,815 + BACOVA_04190 0.65 +0.7
67,815 + BACOVA_04190 0.65 +1.4
67,815 + BACOVA_04190 0.65 +0.1
67,816 - BACOVA_04190 0.66 -1.1
67,816 - BACOVA_04190 0.66 +1.1
67,816 - BACOVA_04190 0.66 +1.1
67,818 + BACOVA_04190 0.66 -0.5
67,837 - BACOVA_04190 0.68 +1.3
67,849 + BACOVA_04190 0.69 -1.4
67,892 + BACOVA_04190 0.73 -0.1
67,893 - BACOVA_04190 0.73 -0.6
67,894 - BACOVA_04190 0.73 -2.3
67,897 - BACOVA_04190 0.73 +0.2
67,909 + BACOVA_04190 0.74 +1.9
67,909 + BACOVA_04190 0.74 -0.1
67,910 - BACOVA_04190 0.74 -2.9
67,913 + BACOVA_04190 0.75 +0.4
67,913 + BACOVA_04190 0.75 -1.4
67,914 - BACOVA_04190 0.75 +0.4
67,915 + BACOVA_04190 0.75 -1.4
67,915 + BACOVA_04190 0.75 -0.4
67,918 - BACOVA_04190 0.75 -1.6
67,958 - BACOVA_04190 0.79 +0.7
68,004 + BACOVA_04190 0.83 +0.3
68,005 - BACOVA_04190 0.83 -2.8
68,005 - BACOVA_04190 0.83 +0.4
68,007 + BACOVA_04190 0.83 +0.4
68,008 - BACOVA_04190 0.84 -2.4
68,017 + BACOVA_04190 0.84 -1.1
68,054 + BACOVA_04190 0.88 -1.4
68,055 - BACOVA_04190 0.88 -0.9
68,091 + +1.0
68,091 + -0.6
68,092 - -0.6
68,099 + +0.3
68,100 - -0.1
68,132 + +0.3
68,133 - +0.7
68,135 - -0.7
68,156 - -0.7
68,185 + +1.9
68,185 + -1.1
68,186 - -0.6
68,188 + +1.8
68,188 + +1.4
68,188 + -0.9
68,188 + +1.3
68,188 + +0.1
68,189 - +0.1
68,189 - -2.0
68,189 - -0.1
68,189 - +0.7
68,189 - -0.3
68,189 - -0.9
68,189 - -0.1
68,245 + -0.3
68,255 - +1.8
68,256 + +0.9
68,314 + BACOVA_04191 0.17 +0.4
68,314 + BACOVA_04191 0.17 +0.6
68,338 + BACOVA_04191 0.20 +0.4
68,339 - BACOVA_04191 0.21 -2.0
68,339 - BACOVA_04191 0.21 -2.1
68,356 + BACOVA_04191 0.23 -0.1
68,368 + BACOVA_04191 0.24 +0.3
68,369 - BACOVA_04191 0.25 -0.9
68,381 + BACOVA_04191 0.26 -1.5
68,409 + BACOVA_04191 0.30 +0.9
68,417 + BACOVA_04191 0.31 +1.7
68,420 - BACOVA_04191 0.31 -0.1
68,420 - BACOVA_04191 0.31 -0.6
68,450 + BACOVA_04191 0.35 +0.5
68,450 + BACOVA_04191 0.35 -1.0
68,456 - BACOVA_04191 0.36 -1.1
68,473 - BACOVA_04191 0.38 -1.1
68,482 + BACOVA_04191 0.39 -0.9
68,566 + BACOVA_04191 0.50 -1.0
68,567 - BACOVA_04191 0.50 -1.4
68,567 - BACOVA_04191 0.50 +0.2
68,580 - BACOVA_04191 0.52 -0.9
68,584 + BACOVA_04191 0.52 +2.1
68,675 + BACOVA_04191 0.64 -0.4
68,676 - BACOVA_04191 0.64 +1.3
68,676 - BACOVA_04191 0.64 -0.7
68,805 - BACOVA_04191 0.81 -0.9
68,871 + BACOVA_04191 0.90 -0.5
68,875 + +0.3
68,875 + -0.4
68,875 + -0.2
68,876 - -1.4
68,876 - -1.2
68,879 + +2.8
68,880 - -0.8
68,932 + +2.7
68,935 + -0.2
68,935 + -1.9
68,986 + +0.9
69,009 - +2.8
69,020 - -0.2
69,068 - -0.1
69,121 - +0.6
69,121 - -0.6
69,133 + +0.8
69,133 + -0.0
69,137 + -0.1
69,137 + -1.6
69,140 + -0.1
69,161 + -0.1
69,162 - -2.4

Or see this region's nucleotide sequence