Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04070

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04069 and BACOVA_04070 overlap by 4 nucleotidesBACOVA_04070 and BACOVA_04071 are separated by 573 nucleotidesBACOVA_04071 and BACOVA_04072 are separated by 188 nucleotides BACOVA_04069: BACOVA_04069 - phosphoadenosine phosphosulfate reductase family protein, at 398,442 to 399,746 _04069 BACOVA_04070: BACOVA_04070 - ParB-like protein, at 399,743 to 400,285 _04070 BACOVA_04071: BACOVA_04071 - hypothetical protein, at 400,859 to 401,008 _04071 BACOVA_04072: BACOVA_04072 - hypothetical protein, at 401,197 to 401,562 _04072 Position (kb) 399 400 401Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 398.761 kb on - strand, within BACOVA_04069at 398.801 kb on + strand, within BACOVA_04069at 398.803 kb on + strand, within BACOVA_04069at 398.803 kb on + strand, within BACOVA_04069at 398.804 kb on - strand, within BACOVA_04069at 398.858 kb on + strand, within BACOVA_04069at 398.862 kb on - strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.912 kb on + strand, within BACOVA_04069at 398.912 kb on + strand, within BACOVA_04069at 398.913 kb on - strand, within BACOVA_04069at 398.957 kb on + strand, within BACOVA_04069at 398.987 kb on + strand, within BACOVA_04069at 398.987 kb on + strand, within BACOVA_04069at 398.987 kb on + strand, within BACOVA_04069at 398.987 kb on + strand, within BACOVA_04069at 398.988 kb on - strand, within BACOVA_04069at 398.988 kb on - strand, within BACOVA_04069at 398.991 kb on + strand, within BACOVA_04069at 398.992 kb on - strand, within BACOVA_04069at 398.993 kb on + strand, within BACOVA_04069at 398.994 kb on - strand, within BACOVA_04069at 399.016 kb on - strand, within BACOVA_04069at 399.021 kb on - strand, within BACOVA_04069at 399.025 kb on - strand, within BACOVA_04069at 399.025 kb on - strand, within BACOVA_04069at 399.027 kb on - strand, within BACOVA_04069at 399.060 kb on - strand, within BACOVA_04069at 399.060 kb on - strand, within BACOVA_04069at 399.071 kb on + strand, within BACOVA_04069at 399.075 kb on + strand, within BACOVA_04069at 399.097 kb on + strand, within BACOVA_04069at 399.129 kb on + strand, within BACOVA_04069at 399.129 kb on + strand, within BACOVA_04069at 399.129 kb on + strand, within BACOVA_04069at 399.130 kb on - strand, within BACOVA_04069at 399.140 kb on - strand, within BACOVA_04069at 399.150 kb on + strand, within BACOVA_04069at 399.151 kb on - strand, within BACOVA_04069at 399.151 kb on - strand, within BACOVA_04069at 399.153 kb on + strand, within BACOVA_04069at 399.251 kb on + strand, within BACOVA_04069at 399.300 kb on - strand, within BACOVA_04069at 399.300 kb on - strand, within BACOVA_04069at 399.300 kb on - strand, within BACOVA_04069at 399.303 kb on + strand, within BACOVA_04069at 399.303 kb on + strand, within BACOVA_04069at 399.303 kb on + strand, within BACOVA_04069at 399.304 kb on - strand, within BACOVA_04069at 399.304 kb on - strand, within BACOVA_04069at 399.311 kb on + strand, within BACOVA_04069at 399.312 kb on - strand, within BACOVA_04069at 399.356 kb on + strand, within BACOVA_04069at 399.356 kb on + strand, within BACOVA_04069at 399.357 kb on - strand, within BACOVA_04069at 399.357 kb on - strand, within BACOVA_04069at 399.537 kb on - strand, within BACOVA_04069at 399.540 kb on + strand, within BACOVA_04069at 399.573 kb on + strand, within BACOVA_04069at 399.618 kb on + strandat 399.620 kb on + strandat 399.639 kb on - strandat 399.644 kb on + strandat 399.644 kb on + strandat 399.701 kb on + strandat 399.701 kb on + strandat 399.716 kb on + strandat 399.726 kb on + strandat 399.736 kb on + strandat 399.755 kb on - strandat 399.755 kb on - strandat 399.767 kb on + strandat 399.800 kb on + strand, within BACOVA_04070at 399.801 kb on - strand, within BACOVA_04070at 399.813 kb on - strand, within BACOVA_04070at 399.813 kb on - strand, within BACOVA_04070at 399.894 kb on + strand, within BACOVA_04070at 399.894 kb on + strand, within BACOVA_04070at 399.895 kb on - strand, within BACOVA_04070at 399.895 kb on - strand, within BACOVA_04070at 399.895 kb on - strand, within BACOVA_04070at 399.899 kb on + strand, within BACOVA_04070at 399.899 kb on + strand, within BACOVA_04070at 399.899 kb on + strand, within BACOVA_04070at 399.903 kb on - strand, within BACOVA_04070at 399.903 kb on - strand, within BACOVA_04070at 399.907 kb on + strand, within BACOVA_04070at 399.924 kb on - strand, within BACOVA_04070at 399.942 kb on - strand, within BACOVA_04070at 399.951 kb on - strand, within BACOVA_04070at 399.953 kb on - strand, within BACOVA_04070at 399.953 kb on - strand, within BACOVA_04070at 399.980 kb on + strand, within BACOVA_04070at 399.983 kb on - strand, within BACOVA_04070at 400.081 kb on + strand, within BACOVA_04070at 400.130 kb on - strand, within BACOVA_04070at 400.283 kb on + strandat 400.296 kb on - strandat 400.296 kb on - strandat 400.298 kb on - strandat 400.298 kb on - strandat 400.299 kb on + strandat 400.299 kb on + strandat 400.299 kb on + strandat 400.301 kb on + strandat 400.302 kb on - strandat 400.342 kb on - strandat 400.391 kb on - strandat 400.401 kb on + strandat 400.443 kb on - strandat 400.561 kb on + strandat 400.561 kb on + strandat 400.562 kb on - strandat 400.566 kb on - strandat 400.566 kb on - strandat 400.574 kb on + strandat 400.580 kb on - strandat 400.618 kb on - strandat 400.698 kb on - strandat 400.707 kb on - strandat 400.709 kb on - strandat 400.727 kb on - strandat 400.752 kb on + strandat 400.763 kb on - strandat 400.876 kb on + strand, within BACOVA_04071at 400.879 kb on - strand, within BACOVA_04071at 400.879 kb on - strand, within BACOVA_04071at 400.879 kb on - strand, within BACOVA_04071at 400.880 kb on + strand, within BACOVA_04071at 400.936 kb on + strand, within BACOVA_04071at 400.937 kb on - strand, within BACOVA_04071at 400.954 kb on + strand, within BACOVA_04071at 400.969 kb on + strand, within BACOVA_04071at 400.969 kb on + strand, within BACOVA_04071at 400.972 kb on + strand, within BACOVA_04071at 400.973 kb on - strand, within BACOVA_04071at 400.973 kb on - strand, within BACOVA_04071at 400.976 kb on + strand, within BACOVA_04071at 400.976 kb on + strand, within BACOVA_04071at 400.977 kb on - strand, within BACOVA_04071at 401.023 kb on + strandat 401.023 kb on + strandat 401.081 kb on + strandat 401.081 kb on + strandat 401.081 kb on + strandat 401.082 kb on - strandat 401.086 kb on + strandat 401.087 kb on - strandat 401.087 kb on - strandat 401.091 kb on - strandat 401.100 kb on + strandat 401.100 kb on + strandat 401.100 kb on + strandat 401.172 kb on - strandat 401.172 kb on - strandat 401.215 kb on - strandat 401.215 kb on - strandat 401.251 kb on - strand, within BACOVA_04072

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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398,761 - BACOVA_04069 0.24 -0.9
398,801 + BACOVA_04069 0.28 -0.5
398,803 + BACOVA_04069 0.28 -0.1
398,803 + BACOVA_04069 0.28 +0.7
398,804 - BACOVA_04069 0.28 +0.3
398,858 + BACOVA_04069 0.32 +0.3
398,862 - BACOVA_04069 0.32 +0.3
398,908 + BACOVA_04069 0.36 +0.8
398,908 + BACOVA_04069 0.36 -0.5
398,908 + BACOVA_04069 0.36 -1.7
398,908 + BACOVA_04069 0.36 -0.2
398,912 + BACOVA_04069 0.36 -0.7
398,912 + BACOVA_04069 0.36 +1.9
398,913 - BACOVA_04069 0.36 -0.2
398,957 + BACOVA_04069 0.39 +1.3
398,987 + BACOVA_04069 0.42 -0.5
398,987 + BACOVA_04069 0.42 -2.0
398,987 + BACOVA_04069 0.42 +1.3
398,987 + BACOVA_04069 0.42 -0.2
398,988 - BACOVA_04069 0.42 +0.4
398,988 - BACOVA_04069 0.42 +0.6
398,991 + BACOVA_04069 0.42 +0.1
398,992 - BACOVA_04069 0.42 +0.8
398,993 + BACOVA_04069 0.42 -1.1
398,994 - BACOVA_04069 0.42 -0.6
399,016 - BACOVA_04069 0.44 +2.3
399,021 - BACOVA_04069 0.44 +0.2
399,025 - BACOVA_04069 0.45 +2.3
399,025 - BACOVA_04069 0.45 -0.2
399,027 - BACOVA_04069 0.45 +1.3
399,060 - BACOVA_04069 0.47 +0.9
399,060 - BACOVA_04069 0.47 -0.2
399,071 + BACOVA_04069 0.48 +0.6
399,075 + BACOVA_04069 0.49 -0.6
399,097 + BACOVA_04069 0.50 -2.7
399,129 + BACOVA_04069 0.53 -0.1
399,129 + BACOVA_04069 0.53 -1.1
399,129 + BACOVA_04069 0.53 -0.2
399,130 - BACOVA_04069 0.53 +0.9
399,140 - BACOVA_04069 0.53 +0.3
399,150 + BACOVA_04069 0.54 -0.7
399,151 - BACOVA_04069 0.54 +0.8
399,151 - BACOVA_04069 0.54 +1.1
399,153 + BACOVA_04069 0.54 +1.9
399,251 + BACOVA_04069 0.62 -1.0
399,300 - BACOVA_04069 0.66 -1.2
399,300 - BACOVA_04069 0.66 -0.4
399,300 - BACOVA_04069 0.66 -0.7
399,303 + BACOVA_04069 0.66 -1.0
399,303 + BACOVA_04069 0.66 +0.9
399,303 + BACOVA_04069 0.66 -1.0
399,304 - BACOVA_04069 0.66 +1.8
399,304 - BACOVA_04069 0.66 -0.5
399,311 + BACOVA_04069 0.67 +1.1
399,312 - BACOVA_04069 0.67 -1.0
399,356 + BACOVA_04069 0.70 -1.5
399,356 + BACOVA_04069 0.70 -1.4
399,357 - BACOVA_04069 0.70 +0.3
399,357 - BACOVA_04069 0.70 -1.5
399,537 - BACOVA_04069 0.84 +1.3
399,540 + BACOVA_04069 0.84 +1.3
399,573 + BACOVA_04069 0.87 +2.3
399,618 + +1.2
399,620 + +4.7
399,639 - -1.2
399,644 + -1.0
399,644 + -1.0
399,701 + +3.2
399,701 + -0.3
399,716 + +0.5
399,726 + +1.7
399,736 + +0.3
399,755 - +0.8
399,755 - -0.7
399,767 + +1.3
399,800 + BACOVA_04070 0.10 -1.7
399,801 - BACOVA_04070 0.11 +0.3
399,813 - BACOVA_04070 0.13 -0.1
399,813 - BACOVA_04070 0.13 +1.8
399,894 + BACOVA_04070 0.28 -1.0
399,894 + BACOVA_04070 0.28 +1.8
399,895 - BACOVA_04070 0.28 -0.3
399,895 - BACOVA_04070 0.28 +0.6
399,895 - BACOVA_04070 0.28 +0.2
399,899 + BACOVA_04070 0.29 -0.7
399,899 + BACOVA_04070 0.29 -2.5
399,899 + BACOVA_04070 0.29 +1.8
399,903 - BACOVA_04070 0.29 -1.7
399,903 - BACOVA_04070 0.29 +1.8
399,907 + BACOVA_04070 0.30 -1.1
399,924 - BACOVA_04070 0.33 +0.2
399,942 - BACOVA_04070 0.37 -1.0
399,951 - BACOVA_04070 0.38 -0.5
399,953 - BACOVA_04070 0.39 +0.9
399,953 - BACOVA_04070 0.39 +1.8
399,980 + BACOVA_04070 0.44 +1.7
399,983 - BACOVA_04070 0.44 +0.6
400,081 + BACOVA_04070 0.62 -1.7
400,130 - BACOVA_04070 0.71 +0.0
400,283 + -1.1
400,296 - -0.5
400,296 - +0.1
400,298 - +2.3
400,298 - -2.1
400,299 + +1.9
400,299 + -2.1
400,299 + -0.1
400,301 + -1.0
400,302 - -0.5
400,342 - -0.1
400,391 - -1.0
400,401 + -1.0
400,443 - +0.5
400,561 + -1.7
400,561 + -1.7
400,562 - +0.3
400,566 - -0.6
400,566 - -0.4
400,574 + -0.7
400,580 - +2.9
400,618 - -1.0
400,698 - -0.2
400,707 - +0.5
400,709 - +0.8
400,727 - +0.4
400,752 + -1.4
400,763 - +0.6
400,876 + BACOVA_04071 0.11 -2.0
400,879 - BACOVA_04071 0.13 -1.2
400,879 - BACOVA_04071 0.13 +0.0
400,879 - BACOVA_04071 0.13 +0.2
400,880 + BACOVA_04071 0.14 +0.0
400,936 + BACOVA_04071 0.51 -1.0
400,937 - BACOVA_04071 0.52 -0.2
400,954 + BACOVA_04071 0.63 +1.6
400,969 + BACOVA_04071 0.73 -2.4
400,969 + BACOVA_04071 0.73 +0.1
400,972 + BACOVA_04071 0.75 -1.0
400,973 - BACOVA_04071 0.76 +0.6
400,973 - BACOVA_04071 0.76 -0.5
400,976 + BACOVA_04071 0.78 -0.7
400,976 + BACOVA_04071 0.78 -0.2
400,977 - BACOVA_04071 0.79 +0.7
401,023 + -1.2
401,023 + -2.0
401,081 + -0.9
401,081 + +1.1
401,081 + -0.8
401,082 - +0.6
401,086 + -1.0
401,087 - -0.7
401,087 - -0.7
401,091 - +0.3
401,100 + -0.2
401,100 + -1.5
401,100 + +1.7
401,172 - +0.1
401,172 - -2.1
401,215 - -0.5
401,215 - -1.2
401,251 - BACOVA_04072 0.15 -2.7

Or see this region's nucleotide sequence