Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03628

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03627 and BACOVA_03628 are separated by 79 nucleotidesBACOVA_03628 and BACOVA_03629 are separated by 53 nucleotides BACOVA_03627: BACOVA_03627 - glycosyl hydrolase family 76, at 434,971 to 436,101 _03627 BACOVA_03628: BACOVA_03628 - endonuclease/exonuclease/phosphatase family protein, at 436,181 to 437,131 _03628 BACOVA_03629: BACOVA_03629 - putative alpha-1,2-mannosidase, at 437,185 to 439,467 _03629 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2 3at 435.322 kb on + strand, within BACOVA_03627at 435.360 kb on - strand, within BACOVA_03627at 435.394 kb on - strand, within BACOVA_03627at 435.405 kb on - strand, within BACOVA_03627at 435.450 kb on - strand, within BACOVA_03627at 435.479 kb on - strand, within BACOVA_03627at 435.540 kb on + strand, within BACOVA_03627at 435.540 kb on + strand, within BACOVA_03627at 435.609 kb on - strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.615 kb on - strand, within BACOVA_03627at 435.615 kb on - strand, within BACOVA_03627at 435.668 kb on + strand, within BACOVA_03627at 435.702 kb on + strand, within BACOVA_03627at 435.713 kb on + strand, within BACOVA_03627at 435.714 kb on - strand, within BACOVA_03627at 435.782 kb on + strand, within BACOVA_03627at 435.782 kb on + strand, within BACOVA_03627at 435.851 kb on + strand, within BACOVA_03627at 435.851 kb on + strand, within BACOVA_03627at 435.852 kb on - strand, within BACOVA_03627at 436.007 kb on - strandat 436.015 kb on + strandat 436.086 kb on + strandat 436.119 kb on + strandat 436.120 kb on - strandat 436.120 kb on - strandat 436.165 kb on + strandat 436.166 kb on - strandat 436.173 kb on + strandat 436.174 kb on - strandat 436.174 kb on - strandat 436.314 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.330 kb on + strand, within BACOVA_03628at 436.331 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.380 kb on - strand, within BACOVA_03628at 436.382 kb on - strand, within BACOVA_03628at 436.403 kb on - strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.442 kb on - strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.675 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.813 kb on + strand, within BACOVA_03628at 436.854 kb on - strand, within BACOVA_03628at 436.863 kb on + strand, within BACOVA_03628at 436.864 kb on - strand, within BACOVA_03628at 436.891 kb on + strand, within BACOVA_03628at 437.051 kb on - strandat 437.064 kb on + strandat 437.108 kb on + strandat 437.137 kb on + strandat 437.151 kb on + strandat 437.151 kb on + strandat 437.204 kb on + strandat 437.204 kb on + strandat 437.205 kb on - strandat 437.205 kb on - strandat 437.209 kb on + strandat 437.210 kb on - strandat 437.268 kb on + strandat 437.272 kb on - strandat 437.280 kb on + strandat 437.370 kb on + strandat 437.370 kb on + strandat 437.440 kb on + strand, within BACOVA_03629at 437.440 kb on + strand, within BACOVA_03629at 437.441 kb on - strand, within BACOVA_03629at 437.446 kb on + strand, within BACOVA_03629at 437.447 kb on + strand, within BACOVA_03629at 437.447 kb on + strand, within BACOVA_03629at 437.448 kb on - strand, within BACOVA_03629at 437.494 kb on + strand, within BACOVA_03629at 437.494 kb on + strand, within BACOVA_03629at 437.495 kb on - strand, within BACOVA_03629at 437.495 kb on - strand, within BACOVA_03629at 437.498 kb on + strand, within BACOVA_03629at 437.556 kb on + strand, within BACOVA_03629at 437.556 kb on + strand, within BACOVA_03629at 437.557 kb on - strand, within BACOVA_03629at 437.558 kb on + strand, within BACOVA_03629at 437.559 kb on - strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.560 kb on + strand, within BACOVA_03629at 437.581 kb on + strand, within BACOVA_03629at 437.582 kb on - strand, within BACOVA_03629at 437.616 kb on - strand, within BACOVA_03629at 437.616 kb on - strand, within BACOVA_03629at 437.628 kb on - strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.629 kb on + strand, within BACOVA_03629at 437.630 kb on - strand, within BACOVA_03629at 437.630 kb on - strand, within BACOVA_03629at 437.643 kb on + strand, within BACOVA_03629at 437.680 kb on + strand, within BACOVA_03629at 437.799 kb on + strand, within BACOVA_03629at 437.800 kb on - strand, within BACOVA_03629at 437.800 kb on - strand, within BACOVA_03629at 437.844 kb on + strand, within BACOVA_03629at 437.844 kb on + strand, within BACOVA_03629at 437.976 kb on + strand, within BACOVA_03629at 437.978 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.019 kb on + strand, within BACOVA_03629at 438.020 kb on - strand, within BACOVA_03629at 438.020 kb on - strand, within BACOVA_03629at 438.025 kb on - strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.042 kb on + strand, within BACOVA_03629at 438.043 kb on - strand, within BACOVA_03629at 438.044 kb on + strand, within BACOVA_03629at 438.044 kb on + strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.045 kb on - strand, within BACOVA_03629at 438.050 kb on + strand, within BACOVA_03629at 438.050 kb on + strand, within BACOVA_03629at 438.051 kb on - strand, within BACOVA_03629at 438.117 kb on - strand, within BACOVA_03629

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
remove
435,322 + BACOVA_03627 0.31 -0.5
435,360 - BACOVA_03627 0.34 -0.9
435,394 - BACOVA_03627 0.37 -1.3
435,405 - BACOVA_03627 0.38 -2.4
435,450 - BACOVA_03627 0.42 -1.7
435,479 - BACOVA_03627 0.45 +1.5
435,540 + BACOVA_03627 0.50 -1.2
435,540 + BACOVA_03627 0.50 -2.1
435,609 - BACOVA_03627 0.56 -0.7
435,614 + BACOVA_03627 0.57 -0.0
435,614 + BACOVA_03627 0.57 -0.5
435,614 + BACOVA_03627 0.57 -1.8
435,615 - BACOVA_03627 0.57 -1.8
435,615 - BACOVA_03627 0.57 -1.1
435,668 + BACOVA_03627 0.62 +1.2
435,702 + BACOVA_03627 0.65 -1.8
435,713 + BACOVA_03627 0.66 -0.8
435,714 - BACOVA_03627 0.66 -1.3
435,782 + BACOVA_03627 0.72 -0.9
435,782 + BACOVA_03627 0.72 -0.3
435,851 + BACOVA_03627 0.78 -2.0
435,851 + BACOVA_03627 0.78 +0.3
435,852 - BACOVA_03627 0.78 +0.5
436,007 - +1.0
436,015 + +2.2
436,086 + -1.3
436,119 + +0.5
436,120 - -0.4
436,120 - -0.1
436,165 + -1.5
436,166 - +2.3
436,173 + -0.9
436,174 - +1.0
436,174 - +1.5
436,314 - BACOVA_03628 0.14 +0.2
436,327 - BACOVA_03628 0.15 +0.5
436,327 - BACOVA_03628 0.15 +1.4
436,330 + BACOVA_03628 0.16 -1.8
436,331 - BACOVA_03628 0.16 -0.5
436,348 - BACOVA_03628 0.18 +1.0
436,348 - BACOVA_03628 0.18 +1.1
436,348 - BACOVA_03628 0.18 +2.5
436,379 + BACOVA_03628 0.21 -1.5
436,379 + BACOVA_03628 0.21 -0.5
436,379 + BACOVA_03628 0.21 -0.8
436,380 - BACOVA_03628 0.21 +3.0
436,382 - BACOVA_03628 0.21 +2.0
436,403 - BACOVA_03628 0.23 +0.4
436,441 + BACOVA_03628 0.27 -2.5
436,441 + BACOVA_03628 0.27 +0.9
436,442 - BACOVA_03628 0.27 -0.4
436,506 + BACOVA_03628 0.34 -0.1
436,506 + BACOVA_03628 0.34 -0.5
436,506 + BACOVA_03628 0.34 +1.9
436,506 + BACOVA_03628 0.34 -0.8
436,507 - BACOVA_03628 0.34 +1.3
436,507 - BACOVA_03628 0.34 +0.5
436,507 - BACOVA_03628 0.34 +1.0
436,675 + BACOVA_03628 0.52 -1.5
436,708 + BACOVA_03628 0.55 -1.3
436,708 + BACOVA_03628 0.55 +0.2
436,813 + BACOVA_03628 0.66 -0.1
436,854 - BACOVA_03628 0.71 +0.7
436,863 + BACOVA_03628 0.72 -0.7
436,864 - BACOVA_03628 0.72 +2.0
436,891 + BACOVA_03628 0.75 -0.3
437,051 - +0.5
437,064 + -1.0
437,108 + -0.5
437,137 + +0.7
437,151 + +0.7
437,151 + +1.5
437,204 + -2.5
437,204 + +2.1
437,205 - +2.4
437,205 - +1.3
437,209 + -0.6
437,210 - +2.3
437,268 + +1.6
437,272 - +1.0
437,280 + +1.8
437,370 + -0.1
437,370 + +1.3
437,440 + BACOVA_03629 0.11 +1.0
437,440 + BACOVA_03629 0.11 +0.2
437,441 - BACOVA_03629 0.11 +0.2
437,446 + BACOVA_03629 0.11 +1.1
437,447 + BACOVA_03629 0.11 +0.2
437,447 + BACOVA_03629 0.11 -0.9
437,448 - BACOVA_03629 0.12 +0.4
437,494 + BACOVA_03629 0.14 +1.4
437,494 + BACOVA_03629 0.14 +3.1
437,495 - BACOVA_03629 0.14 +2.9
437,495 - BACOVA_03629 0.14 +1.1
437,498 + BACOVA_03629 0.14 +0.3
437,556 + BACOVA_03629 0.16 +1.2
437,556 + BACOVA_03629 0.16 +1.5
437,557 - BACOVA_03629 0.16 +0.5
437,558 + BACOVA_03629 0.16 +0.6
437,559 - BACOVA_03629 0.16 +0.9
437,560 + BACOVA_03629 0.16 +1.2
437,560 + BACOVA_03629 0.16 +0.5
437,560 + BACOVA_03629 0.16 +1.2
437,581 + BACOVA_03629 0.17 +2.6
437,582 - BACOVA_03629 0.17 -0.0
437,616 - BACOVA_03629 0.19 +2.7
437,616 - BACOVA_03629 0.19 +0.2
437,628 - BACOVA_03629 0.19 +1.1
437,629 + BACOVA_03629 0.19 +1.1
437,629 + BACOVA_03629 0.19 +0.5
437,629 + BACOVA_03629 0.19 +1.4
437,630 - BACOVA_03629 0.19 +1.2
437,630 - BACOVA_03629 0.19 -0.1
437,643 + BACOVA_03629 0.20 +0.8
437,680 + BACOVA_03629 0.22 +2.4
437,799 + BACOVA_03629 0.27 +0.9
437,800 - BACOVA_03629 0.27 -0.5
437,800 - BACOVA_03629 0.27 +2.7
437,844 + BACOVA_03629 0.29 +0.8
437,844 + BACOVA_03629 0.29 -0.4
437,976 + BACOVA_03629 0.35 +1.8
437,978 + BACOVA_03629 0.35 +0.8
438,019 + BACOVA_03629 0.37 +2.6
438,019 + BACOVA_03629 0.37 +0.9
438,019 + BACOVA_03629 0.37 +3.6
438,020 - BACOVA_03629 0.37 +2.9
438,020 - BACOVA_03629 0.37 +2.7
438,025 - BACOVA_03629 0.37 -0.8
438,042 + BACOVA_03629 0.38 +0.5
438,042 + BACOVA_03629 0.38 +1.0
438,042 + BACOVA_03629 0.38 +1.4
438,043 - BACOVA_03629 0.38 +0.6
438,044 + BACOVA_03629 0.38 +0.4
438,044 + BACOVA_03629 0.38 +3.2
438,045 - BACOVA_03629 0.38 +0.6
438,045 - BACOVA_03629 0.38 +0.3
438,045 - BACOVA_03629 0.38 +0.4
438,045 - BACOVA_03629 0.38 +2.0
438,050 + BACOVA_03629 0.38 +2.5
438,050 + BACOVA_03629 0.38 +1.2
438,051 - BACOVA_03629 0.38 -0.1
438,117 - BACOVA_03629 0.41 -0.3

Or see this region's nucleotide sequence