Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03563 and BACOVA_03564 are separated by 7 nucleotides BACOVA_03564 and BACOVA_03565 are separated by 134 nucleotides
BACOVA_03563: BACOVA_03563 - hypothetical protein, at 343,431 to 344,816
_03563
BACOVA_03564: BACOVA_03564 - RNA polymerase sigma-70 factor, at 344,824 to 345,333
_03564
BACOVA_03565: BACOVA_03565 - TonB-linked outer membrane protein, SusC/RagA family, at 345,468 to 348,704
_03565
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 343.839 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.840 kb on + strand, within BACOVA_03563 at 343.862 kb on - strand, within BACOVA_03563 at 343.961 kb on - strand, within BACOVA_03563 at 343.975 kb on + strand, within BACOVA_03563 at 343.984 kb on + strand, within BACOVA_03563 at 344.004 kb on + strand, within BACOVA_03563 at 344.005 kb on - strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.083 kb on - strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.105 kb on + strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.144 kb on + strand, within BACOVA_03563 at 344.153 kb on + strand, within BACOVA_03563 at 344.185 kb on - strand, within BACOVA_03563 at 344.200 kb on - strand, within BACOVA_03563 at 344.217 kb on - strand, within BACOVA_03563 at 344.221 kb on + strand, within BACOVA_03563 at 344.266 kb on + strand, within BACOVA_03563 at 344.267 kb on - strand, within BACOVA_03563 at 344.271 kb on + strand, within BACOVA_03563 at 344.272 kb on - strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.292 kb on + strand, within BACOVA_03563 at 344.359 kb on - strand, within BACOVA_03563 at 344.376 kb on - strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.543 kb on + strand, within BACOVA_03563 at 344.544 kb on - strand, within BACOVA_03563 at 344.662 kb on - strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.684 kb on + strand at 344.684 kb on + strand at 344.706 kb on + strand at 344.760 kb on + strand at 344.761 kb on - strand at 344.799 kb on + strand at 344.800 kb on - strand at 344.802 kb on + strand at 344.803 kb on - strand at 344.804 kb on + strand at 344.819 kb on + strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.863 kb on + strand at 344.865 kb on + strand at 344.865 kb on + strand at 344.866 kb on - strand at 344.882 kb on + strand, within BACOVA_03564 at 344.897 kb on + strand, within BACOVA_03564 at 344.902 kb on + strand, within BACOVA_03564 at 344.949 kb on - strand, within BACOVA_03564 at 344.971 kb on - strand, within BACOVA_03564 at 345.040 kb on + strand, within BACOVA_03564 at 345.056 kb on - strand, within BACOVA_03564 at 345.079 kb on + strand, within BACOVA_03564 at 345.082 kb on - strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.105 kb on + strand, within BACOVA_03564 at 345.106 kb on - strand, within BACOVA_03564 at 345.193 kb on - strand, within BACOVA_03564 at 345.199 kb on + strand, within BACOVA_03564 at 345.277 kb on + strand, within BACOVA_03564 at 345.313 kb on + strand at 345.316 kb on - strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.353 kb on + strand at 345.354 kb on - strand at 345.354 kb on - strand at 345.439 kb on - strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.490 kb on + strand at 345.491 kb on - strand at 345.491 kb on - strand at 345.494 kb on + strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.499 kb on + strand at 345.518 kb on - strand at 345.618 kb on - strand at 345.618 kb on - strand at 345.693 kb on - strand at 345.714 kb on - strand at 345.714 kb on - strand at 345.725 kb on - strand at 345.755 kb on + strand at 345.781 kb on + strand at 345.806 kb on - strand, within BACOVA_03565 at 345.853 kb on + strand, within BACOVA_03565 at 345.854 kb on - strand, within BACOVA_03565 at 345.990 kb on - strand, within BACOVA_03565 at 345.990 kb on - strand, within BACOVA_03565 at 345.999 kb on - strand, within BACOVA_03565 at 346.039 kb on + strand, within BACOVA_03565 at 346.061 kb on + strand, within BACOVA_03565 at 346.062 kb on - strand, within BACOVA_03565 at 346.062 kb on - strand, within BACOVA_03565 at 346.117 kb on + strand, within BACOVA_03565 at 346.132 kb on + strand, within BACOVA_03565 at 346.132 kb on + strand, within BACOVA_03565 at 346.133 kb on - strand, within BACOVA_03565 at 346.151 kb on + strand, within BACOVA_03565 at 346.169 kb on + strand, within BACOVA_03565 at 346.169 kb on + strand, within BACOVA_03565 at 346.170 kb on - strand, within BACOVA_03565 at 346.173 kb on + strand, within BACOVA_03565 at 346.173 kb on + strand, within BACOVA_03565 at 346.173 kb on + strand, within BACOVA_03565 at 346.173 kb on + strand, within BACOVA_03565 at 346.173 kb on + strand, within BACOVA_03565 at 346.174 kb on - strand, within BACOVA_03565 at 346.174 kb on - strand, within BACOVA_03565 at 346.249 kb on - strand, within BACOVA_03565 at 346.249 kb on - strand, within BACOVA_03565 at 346.250 kb on + strand, within BACOVA_03565 at 346.250 kb on + strand, within BACOVA_03565 at 346.251 kb on - strand, within BACOVA_03565 at 346.251 kb on - strand, within BACOVA_03565
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 343,839 - BACOVA_03563 0.29 -0.1 343,839 - BACOVA_03563 0.29 -1.1 343,840 + BACOVA_03563 0.30 -0.3 343,862 - BACOVA_03563 0.31 +0.3 343,961 - BACOVA_03563 0.38 +1.0 343,975 + BACOVA_03563 0.39 -1.1 343,984 + BACOVA_03563 0.40 -0.7 344,004 + BACOVA_03563 0.41 +1.6 344,005 - BACOVA_03563 0.41 -1.6 344,073 + BACOVA_03563 0.46 -2.2 344,073 + BACOVA_03563 0.46 -1.3 344,074 - BACOVA_03563 0.46 +3.1 344,074 - BACOVA_03563 0.46 +0.3 344,082 + BACOVA_03563 0.47 -0.9 344,082 + BACOVA_03563 0.47 +0.5 344,083 - BACOVA_03563 0.47 +1.5 344,084 + BACOVA_03563 0.47 -1.7 344,084 + BACOVA_03563 0.47 +0.1 344,084 + BACOVA_03563 0.47 -1.1 344,085 - BACOVA_03563 0.47 -0.0 344,085 - BACOVA_03563 0.47 +0.1 344,085 - BACOVA_03563 0.47 -1.7 344,085 - BACOVA_03563 0.47 +0.5 344,085 - BACOVA_03563 0.47 +0.2 344,105 + BACOVA_03563 0.49 -0.7 344,110 - BACOVA_03563 0.49 -0.6 344,110 - BACOVA_03563 0.49 -0.2 344,144 + BACOVA_03563 0.51 -0.5 344,153 + BACOVA_03563 0.52 +0.5 344,185 - BACOVA_03563 0.54 +1.6 344,200 - BACOVA_03563 0.55 -1.1 344,217 - BACOVA_03563 0.57 -0.1 344,221 + BACOVA_03563 0.57 -1.0 344,266 + BACOVA_03563 0.60 +0.2 344,267 - BACOVA_03563 0.60 -2.9 344,271 + BACOVA_03563 0.61 -0.7 344,272 - BACOVA_03563 0.61 +3.7 344,276 + BACOVA_03563 0.61 +2.4 344,276 + BACOVA_03563 0.61 +0.2 344,277 - BACOVA_03563 0.61 +1.5 344,277 - BACOVA_03563 0.61 +0.2 344,292 + BACOVA_03563 0.62 -1.4 344,359 - BACOVA_03563 0.67 -1.5 344,376 - BACOVA_03563 0.68 -1.1 344,396 + BACOVA_03563 0.70 -2.1 344,396 + BACOVA_03563 0.70 +0.2 344,526 - BACOVA_03563 0.79 -0.1 344,526 - BACOVA_03563 0.79 +0.1 344,543 + BACOVA_03563 0.80 +2.6 344,544 - BACOVA_03563 0.80 +2.2 344,662 - BACOVA_03563 0.89 +0.9 344,664 + BACOVA_03563 0.89 -0.1 344,664 + BACOVA_03563 0.89 +0.5 344,665 - BACOVA_03563 0.89 +1.1 344,665 - BACOVA_03563 0.89 -1.8 344,677 + BACOVA_03563 0.90 -0.8 344,677 + BACOVA_03563 0.90 -0.5 344,684 + -0.9 344,684 + +0.2 344,706 + +1.5 344,760 + -1.3 344,761 - -1.7 344,799 + -2.3 344,800 - -1.9 344,802 + -0.1 344,803 - -0.8 344,804 + -0.9 344,819 + -0.7 344,848 - +1.2 344,848 - +0.3 344,848 - -0.7 344,853 - -0.1 344,853 - -0.1 344,853 - -1.5 344,863 + -0.1 344,865 + -0.3 344,865 + +0.5 344,866 - -0.7 344,882 + BACOVA_03564 0.11 -1.8 344,897 + BACOVA_03564 0.14 -0.1 344,902 + BACOVA_03564 0.15 -0.3 344,949 - BACOVA_03564 0.25 -0.2 344,971 - BACOVA_03564 0.29 +0.4 345,040 + BACOVA_03564 0.42 -0.7 345,056 - BACOVA_03564 0.45 -1.2 345,079 + BACOVA_03564 0.50 -0.8 345,082 - BACOVA_03564 0.51 +1.1 345,085 + BACOVA_03564 0.51 -2.7 345,085 + BACOVA_03564 0.51 +1.1 345,085 + BACOVA_03564 0.51 +1.2 345,105 + BACOVA_03564 0.55 +0.6 345,106 - BACOVA_03564 0.55 -1.0 345,193 - BACOVA_03564 0.72 -0.1 345,199 + BACOVA_03564 0.74 -0.0 345,277 + BACOVA_03564 0.89 +1.5 345,313 + +0.5 345,316 - -0.5 345,334 + -2.5 345,334 + -0.8 345,334 + -0.5 345,353 + +0.5 345,354 - -0.2 345,354 - -0.1 345,439 - +0.4 345,446 + -1.8 345,447 - +0.5 345,490 + -0.8 345,491 - +0.2 345,491 - +0.8 345,494 + -2.3 345,495 - +0.0 345,495 - -1.1 345,495 - +0.9 345,499 + +0.8 345,518 - -1.8 345,618 - -0.8 345,618 - +1.4 345,693 - -1.9 345,714 - -0.4 345,714 - -0.6 345,725 - -0.9 345,755 + -0.1 345,781 + -0.2 345,806 - BACOVA_03565 0.10 -1.8 345,853 + BACOVA_03565 0.12 -0.1 345,854 - BACOVA_03565 0.12 -0.0 345,990 - BACOVA_03565 0.16 +0.7 345,990 - BACOVA_03565 0.16 -0.9 345,999 - BACOVA_03565 0.16 +0.5 346,039 + BACOVA_03565 0.18 -0.7 346,061 + BACOVA_03565 0.18 -0.2 346,062 - BACOVA_03565 0.18 +1.2 346,062 - BACOVA_03565 0.18 -1.1 346,117 + BACOVA_03565 0.20 -0.3 346,132 + BACOVA_03565 0.21 +0.0 346,132 + BACOVA_03565 0.21 -0.1 346,133 - BACOVA_03565 0.21 -0.6 346,151 + BACOVA_03565 0.21 +0.0 346,169 + BACOVA_03565 0.22 +0.3 346,169 + BACOVA_03565 0.22 -0.1 346,170 - BACOVA_03565 0.22 -0.7 346,173 + BACOVA_03565 0.22 +0.8 346,173 + BACOVA_03565 0.22 -1.2 346,173 + BACOVA_03565 0.22 +1.2 346,173 + BACOVA_03565 0.22 -0.1 346,173 + BACOVA_03565 0.22 +1.7 346,174 - BACOVA_03565 0.22 +0.2 346,174 - BACOVA_03565 0.22 -0.2 346,249 - BACOVA_03565 0.24 +0.6 346,249 - BACOVA_03565 0.24 -1.2 346,250 + BACOVA_03565 0.24 +0.1 346,250 + BACOVA_03565 0.24 +2.7 346,251 - BACOVA_03565 0.24 -0.2 346,251 - BACOVA_03565 0.24 +0.5
Or see this region's nucleotide sequence