Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03240 and BACOVA_03241 are separated by 23 nucleotides BACOVA_03241 and BACOVA_03242 are separated by 142 nucleotides BACOVA_03242 and BACOVA_03243 are separated by 331 nucleotides
BACOVA_03240: BACOVA_03240 - outer membrane efflux protein, at 332,733 to 334,103
_03240
BACOVA_03241: BACOVA_03241 - hypothetical protein, at 334,127 to 334,372
_03241
BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994
_03242
BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592
_03243
Position (kb) 334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 333.135 kb on + strand, within BACOVA_03240 at 333.135 kb on + strand, within BACOVA_03240 at 333.136 kb on - strand, within BACOVA_03240 at 333.137 kb on + strand, within BACOVA_03240 at 333.163 kb on - strand, within BACOVA_03240 at 333.164 kb on + strand, within BACOVA_03240 at 333.212 kb on - strand, within BACOVA_03240 at 333.215 kb on + strand, within BACOVA_03240 at 333.215 kb on + strand, within BACOVA_03240 at 333.216 kb on - strand, within BACOVA_03240 at 333.243 kb on - strand, within BACOVA_03240 at 333.243 kb on - strand, within BACOVA_03240 at 333.243 kb on - strand, within BACOVA_03240 at 333.249 kb on + strand, within BACOVA_03240 at 333.250 kb on - strand, within BACOVA_03240 at 333.250 kb on - strand, within BACOVA_03240 at 333.259 kb on + strand, within BACOVA_03240 at 333.302 kb on + strand, within BACOVA_03240 at 333.303 kb on - strand, within BACOVA_03240 at 333.308 kb on - strand, within BACOVA_03240 at 333.315 kb on + strand, within BACOVA_03240 at 333.465 kb on + strand, within BACOVA_03240 at 333.500 kb on - strand, within BACOVA_03240 at 333.500 kb on - strand, within BACOVA_03240 at 333.500 kb on - strand, within BACOVA_03240 at 333.554 kb on + strand, within BACOVA_03240 at 333.627 kb on - strand, within BACOVA_03240 at 333.634 kb on + strand, within BACOVA_03240 at 333.635 kb on - strand, within BACOVA_03240 at 333.659 kb on + strand, within BACOVA_03240 at 333.663 kb on + strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.777 kb on - strand, within BACOVA_03240 at 333.781 kb on + strand, within BACOVA_03240 at 333.781 kb on + strand, within BACOVA_03240 at 333.873 kb on - strand, within BACOVA_03240 at 333.873 kb on - strand, within BACOVA_03240 at 333.990 kb on + strand at 333.991 kb on - strand at 334.023 kb on + strand at 334.056 kb on + strand at 334.056 kb on + strand at 334.057 kb on - strand at 334.065 kb on + strand at 334.066 kb on - strand at 334.066 kb on - strand at 334.074 kb on + strand at 334.075 kb on - strand at 334.105 kb on - strand at 334.160 kb on + strand, within BACOVA_03241 at 334.175 kb on - strand, within BACOVA_03241 at 334.187 kb on - strand, within BACOVA_03241 at 334.235 kb on + strand, within BACOVA_03241 at 334.257 kb on - strand, within BACOVA_03241 at 334.257 kb on - strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.298 kb on - strand, within BACOVA_03241 at 334.379 kb on - strand at 334.384 kb on - strand at 334.401 kb on + strand at 334.402 kb on - strand at 334.408 kb on - strand at 334.439 kb on - strand at 334.497 kb on - strand at 334.516 kb on + strand at 334.517 kb on - strand at 334.637 kb on + strand, within BACOVA_03242 at 334.638 kb on - strand, within BACOVA_03242 at 334.641 kb on + strand, within BACOVA_03242 at 334.642 kb on - strand, within BACOVA_03242 at 334.703 kb on + strand, within BACOVA_03242 at 334.830 kb on + strand, within BACOVA_03242 at 334.869 kb on - strand, within BACOVA_03242 at 334.927 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.982 kb on - strand at 334.985 kb on + strand at 334.986 kb on - strand at 335.028 kb on + strand at 335.061 kb on - strand at 335.063 kb on + strand at 335.064 kb on - strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.105 kb on - strand at 335.109 kb on - strand at 335.162 kb on + strand at 335.163 kb on - strand at 335.164 kb on + strand at 335.193 kb on + strand at 335.193 kb on + strand at 335.194 kb on - strand at 335.244 kb on - strand at 335.279 kb on - strand at 335.288 kb on - strand at 335.293 kb on + strand at 335.294 kb on - strand at 335.294 kb on - strand at 335.298 kb on - strand at 335.300 kb on + strand at 335.310 kb on + strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.320 kb on - strand at 335.321 kb on + strand at 335.321 kb on + strand at 335.326 kb on - strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 333,135 + BACOVA_03240 0.29 +0.8 333,135 + BACOVA_03240 0.29 -0.3 333,136 - BACOVA_03240 0.29 -0.8 333,137 + BACOVA_03240 0.29 -0.3 333,163 - BACOVA_03240 0.31 +0.2 333,164 + BACOVA_03240 0.31 -1.1 333,212 - BACOVA_03240 0.35 -0.9 333,215 + BACOVA_03240 0.35 +1.1 333,215 + BACOVA_03240 0.35 -0.3 333,216 - BACOVA_03240 0.35 -1.1 333,243 - BACOVA_03240 0.37 +0.2 333,243 - BACOVA_03240 0.37 -0.2 333,243 - BACOVA_03240 0.37 -0.0 333,249 + BACOVA_03240 0.38 +1.1 333,250 - BACOVA_03240 0.38 -0.9 333,250 - BACOVA_03240 0.38 -0.2 333,259 + BACOVA_03240 0.38 -0.8 333,302 + BACOVA_03240 0.42 -0.7 333,303 - BACOVA_03240 0.42 -0.5 333,308 - BACOVA_03240 0.42 -2.9 333,315 + BACOVA_03240 0.42 -0.1 333,465 + BACOVA_03240 0.53 +0.2 333,500 - BACOVA_03240 0.56 +1.5 333,500 - BACOVA_03240 0.56 -0.7 333,500 - BACOVA_03240 0.56 -0.9 333,554 + BACOVA_03240 0.60 +0.4 333,627 - BACOVA_03240 0.65 +0.2 333,634 + BACOVA_03240 0.66 -0.8 333,635 - BACOVA_03240 0.66 +2.0 333,659 + BACOVA_03240 0.68 +1.1 333,663 + BACOVA_03240 0.68 +0.1 333,664 - BACOVA_03240 0.68 +0.2 333,664 - BACOVA_03240 0.68 +1.0 333,664 - BACOVA_03240 0.68 +3.6 333,777 - BACOVA_03240 0.76 +1.3 333,781 + BACOVA_03240 0.76 +2.8 333,781 + BACOVA_03240 0.76 -1.8 333,873 - BACOVA_03240 0.83 +1.2 333,873 - BACOVA_03240 0.83 +0.7 333,990 + +0.9 333,991 - -1.7 334,023 + +0.2 334,056 + +0.5 334,056 + +2.1 334,057 - +0.6 334,065 + -0.7 334,066 - +0.3 334,066 - -1.7 334,074 + -0.3 334,075 - -0.5 334,105 - +1.8 334,160 + BACOVA_03241 0.13 -1.5 334,175 - BACOVA_03241 0.20 +1.5 334,187 - BACOVA_03241 0.24 +0.4 334,235 + BACOVA_03241 0.44 -0.1 334,257 - BACOVA_03241 0.53 +0.9 334,257 - BACOVA_03241 0.53 -0.8 334,279 + BACOVA_03241 0.62 -1.4 334,279 + BACOVA_03241 0.62 -1.1 334,279 + BACOVA_03241 0.62 -0.2 334,298 - BACOVA_03241 0.70 -1.1 334,379 - -1.1 334,384 - +0.4 334,401 + -0.7 334,402 - -0.3 334,408 - -0.9 334,439 - -1.2 334,497 - -1.5 334,516 + -1.3 334,517 - -0.5 334,637 + BACOVA_03242 0.25 -1.1 334,638 - BACOVA_03242 0.26 -0.7 334,641 + BACOVA_03242 0.26 +0.4 334,642 - BACOVA_03242 0.26 -0.5 334,703 + BACOVA_03242 0.39 +1.8 334,830 + BACOVA_03242 0.66 -0.5 334,869 - BACOVA_03242 0.74 -0.3 334,927 - BACOVA_03242 0.86 +0.5 334,931 - BACOVA_03242 0.87 +1.9 334,931 - BACOVA_03242 0.87 +1.2 334,982 - +2.1 334,985 + -0.9 334,986 - +0.4 335,028 + -2.6 335,061 - -1.7 335,063 + +0.6 335,064 - +1.8 335,098 + +0.3 335,098 + +0.3 335,098 + -0.5 335,105 - +1.1 335,109 - -0.3 335,162 + -1.5 335,163 - +1.9 335,164 + -0.1 335,193 + -1.9 335,193 + +0.9 335,194 - +1.5 335,244 - -1.3 335,279 - -1.0 335,288 - -0.1 335,293 + -0.6 335,294 - +0.3 335,294 - -0.3 335,298 - +0.9 335,300 + -0.5 335,310 + -0.9 335,314 - +0.3 335,314 - -0.3 335,314 - -0.2 335,320 - -0.8 335,321 + +1.5 335,321 + -0.7 335,326 - -0.2 335,330 + +2.1 335,330 + +0.5 335,330 + -0.5 335,330 + +0.0 335,330 + -1.1 335,330 + -0.5 335,331 - +0.8
Or see this region's nucleotide sequence