Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02524

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02521 and BACOVA_02522 are separated by 9 nucleotidesBACOVA_02522 and BACOVA_02523 are separated by 126 nucleotidesBACOVA_02523 and BACOVA_02524 are separated by 62 nucleotidesBACOVA_02524 and BACOVA_02525 are separated by 25 nucleotidesBACOVA_02525 and BACOVA_02526 are separated by 110 nucleotides BACOVA_02521: BACOVA_02521 - response regulator receiver domain protein, at 291,681 to 292,403 _02521 BACOVA_02522: BACOVA_02522 - hypothetical protein, at 292,413 to 292,553 _02522 BACOVA_02523: BACOVA_02523 - hypothetical protein, at 292,680 to 292,925 _02523 BACOVA_02524: BACOVA_02524 - hypothetical protein, at 292,988 to 293,362 _02524 BACOVA_02525: BACOVA_02525 - hypothetical protein, at 293,388 to 294,077 _02525 BACOVA_02526: BACOVA_02526 - succinate-CoA ligase, alpha subunit, at 294,188 to 295,048 _02526 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.018 kb on + strand, within BACOVA_02521at 292.028 kb on + strand, within BACOVA_02521at 292.028 kb on + strand, within BACOVA_02521at 292.029 kb on - strand, within BACOVA_02521at 292.029 kb on - strand, within BACOVA_02521at 292.069 kb on + strand, within BACOVA_02521at 292.080 kb on + strand, within BACOVA_02521at 292.081 kb on - strand, within BACOVA_02521at 292.081 kb on - strand, within BACOVA_02521at 292.082 kb on + strand, within BACOVA_02521at 292.083 kb on - strand, within BACOVA_02521at 292.107 kb on + strand, within BACOVA_02521at 292.107 kb on + strand, within BACOVA_02521at 292.108 kb on - strand, within BACOVA_02521at 292.110 kb on - strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.263 kb on + strand, within BACOVA_02521at 292.264 kb on - strand, within BACOVA_02521at 292.274 kb on + strand, within BACOVA_02521at 292.274 kb on + strand, within BACOVA_02521at 292.313 kb on + strand, within BACOVA_02521at 292.314 kb on - strand, within BACOVA_02521at 292.314 kb on - strand, within BACOVA_02521at 292.323 kb on + strand, within BACOVA_02521at 292.323 kb on + strand, within BACOVA_02521at 292.330 kb on + strand, within BACOVA_02521at 292.336 kb on + strandat 292.414 kb on + strandat 292.432 kb on - strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.433 kb on + strand, within BACOVA_02522at 292.508 kb on - strand, within BACOVA_02522at 292.554 kb on + strandat 292.564 kb on + strandat 292.575 kb on + strandat 292.611 kb on + strandat 292.611 kb on + strandat 292.611 kb on + strandat 292.622 kb on - strandat 292.625 kb on + strandat 292.637 kb on - strandat 292.675 kb on - strandat 292.690 kb on - strandat 292.704 kb on - strandat 292.704 kb on - strandat 292.707 kb on + strand, within BACOVA_02523at 292.707 kb on + strand, within BACOVA_02523at 292.708 kb on - strand, within BACOVA_02523at 292.708 kb on - strand, within BACOVA_02523at 292.739 kb on - strand, within BACOVA_02523at 292.739 kb on - strand, within BACOVA_02523at 292.739 kb on - strand, within BACOVA_02523at 292.750 kb on - strand, within BACOVA_02523at 292.794 kb on - strand, within BACOVA_02523at 292.848 kb on - strand, within BACOVA_02523at 292.854 kb on - strand, within BACOVA_02523at 292.878 kb on + strand, within BACOVA_02523at 292.882 kb on + strand, within BACOVA_02523at 292.883 kb on - strand, within BACOVA_02523at 292.898 kb on - strand, within BACOVA_02523at 292.923 kb on + strandat 292.933 kb on + strandat 292.934 kb on - strandat 292.937 kb on + strandat 292.939 kb on + strandat 292.939 kb on + strandat 292.940 kb on - strandat 292.940 kb on - strandat 292.944 kb on + strandat 292.944 kb on + strandat 292.947 kb on + strandat 292.966 kb on + strandat 292.967 kb on - strandat 293.023 kb on + strandat 293.024 kb on - strandat 293.027 kb on - strand, within BACOVA_02524at 293.048 kb on + strand, within BACOVA_02524at 293.109 kb on - strand, within BACOVA_02524at 293.129 kb on + strand, within BACOVA_02524at 293.129 kb on + strand, within BACOVA_02524at 293.141 kb on + strand, within BACOVA_02524at 293.161 kb on + strand, within BACOVA_02524at 293.181 kb on + strand, within BACOVA_02524at 293.182 kb on - strand, within BACOVA_02524at 293.189 kb on + strand, within BACOVA_02524at 293.209 kb on - strand, within BACOVA_02524at 293.233 kb on - strand, within BACOVA_02524at 293.245 kb on + strand, within BACOVA_02524at 293.327 kb on - strandat 293.327 kb on - strandat 293.327 kb on - strandat 293.350 kb on + strandat 293.355 kb on - strandat 293.363 kb on - strandat 293.395 kb on + strandat 293.395 kb on + strandat 293.416 kb on + strandat 293.417 kb on - strandat 293.417 kb on - strandat 293.426 kb on - strandat 293.436 kb on + strandat 293.454 kb on + strandat 293.460 kb on - strand, within BACOVA_02525at 293.531 kb on - strand, within BACOVA_02525at 293.541 kb on - strand, within BACOVA_02525at 293.634 kb on + strand, within BACOVA_02525at 293.681 kb on + strand, within BACOVA_02525at 293.693 kb on + strand, within BACOVA_02525at 293.698 kb on + strand, within BACOVA_02525at 293.699 kb on - strand, within BACOVA_02525at 293.725 kb on - strand, within BACOVA_02525at 293.757 kb on - strand, within BACOVA_02525at 293.757 kb on - strand, within BACOVA_02525at 293.800 kb on - strand, within BACOVA_02525at 293.811 kb on + strand, within BACOVA_02525at 293.812 kb on - strand, within BACOVA_02525at 293.816 kb on + strand, within BACOVA_02525at 293.837 kb on - strand, within BACOVA_02525at 293.911 kb on - strand, within BACOVA_02525at 293.987 kb on + strand, within BACOVA_02525at 294.027 kb on + strandat 294.032 kb on + strandat 294.033 kb on - strandat 294.048 kb on - strandat 294.060 kb on - strandat 294.061 kb on + strandat 294.062 kb on - strandat 294.071 kb on + strandat 294.071 kb on + strandat 294.080 kb on + strandat 294.108 kb on + strandat 294.109 kb on - strandat 294.109 kb on - strandat 294.113 kb on - strandat 294.113 kb on - strandat 294.113 kb on - strandat 294.152 kb on + strandat 294.152 kb on + strandat 294.153 kb on - strandat 294.153 kb on - strandat 294.158 kb on + strandat 294.158 kb on + strandat 294.158 kb on + strandat 294.159 kb on - strandat 294.190 kb on - strandat 294.201 kb on - strandat 294.349 kb on + strand, within BACOVA_02526at 294.350 kb on - strand, within BACOVA_02526at 294.359 kb on + strand, within BACOVA_02526

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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292,018 + BACOVA_02521 0.47 +0.4
292,018 + BACOVA_02521 0.47 -0.9
292,018 + BACOVA_02521 0.47 -2.1
292,018 + BACOVA_02521 0.47 -2.5
292,028 + BACOVA_02521 0.48 -1.0
292,028 + BACOVA_02521 0.48 +1.1
292,029 - BACOVA_02521 0.48 +1.0
292,029 - BACOVA_02521 0.48 -0.9
292,069 + BACOVA_02521 0.54 +0.5
292,080 + BACOVA_02521 0.55 +1.7
292,081 - BACOVA_02521 0.55 -1.6
292,081 - BACOVA_02521 0.55 -0.4
292,082 + BACOVA_02521 0.55 -0.2
292,083 - BACOVA_02521 0.56 -0.8
292,107 + BACOVA_02521 0.59 +0.1
292,107 + BACOVA_02521 0.59 -0.2
292,108 - BACOVA_02521 0.59 -0.4
292,110 - BACOVA_02521 0.59 +0.4
292,263 + BACOVA_02521 0.80 +1.5
292,263 + BACOVA_02521 0.80 +0.1
292,263 + BACOVA_02521 0.80 +1.8
292,264 - BACOVA_02521 0.81 -0.6
292,274 + BACOVA_02521 0.82 +0.4
292,274 + BACOVA_02521 0.82 -0.9
292,313 + BACOVA_02521 0.87 +1.9
292,314 - BACOVA_02521 0.88 -1.2
292,314 - BACOVA_02521 0.88 +0.7
292,323 + BACOVA_02521 0.89 -0.1
292,323 + BACOVA_02521 0.89 +0.8
292,330 + BACOVA_02521 0.90 -0.4
292,336 + +0.4
292,414 + +1.6
292,432 - BACOVA_02522 0.13 -0.2
292,433 + BACOVA_02522 0.14 +2.6
292,433 + BACOVA_02522 0.14 +0.1
292,433 + BACOVA_02522 0.14 +1.1
292,508 - BACOVA_02522 0.67 +0.4
292,554 + +2.6
292,564 + -1.2
292,575 + -0.7
292,611 + +1.8
292,611 + -0.5
292,611 + +0.2
292,622 - -0.8
292,625 + -0.1
292,637 - -0.1
292,675 - +2.8
292,690 - -0.4
292,704 - -1.2
292,704 - -0.9
292,707 + BACOVA_02523 0.11 -2.1
292,707 + BACOVA_02523 0.11 -1.1
292,708 - BACOVA_02523 0.11 -0.9
292,708 - BACOVA_02523 0.11 +1.1
292,739 - BACOVA_02523 0.24 -0.9
292,739 - BACOVA_02523 0.24 +2.5
292,739 - BACOVA_02523 0.24 +0.4
292,750 - BACOVA_02523 0.28 -1.4
292,794 - BACOVA_02523 0.46 -2.5
292,848 - BACOVA_02523 0.68 +0.3
292,854 - BACOVA_02523 0.71 +0.1
292,878 + BACOVA_02523 0.80 -0.2
292,882 + BACOVA_02523 0.82 -0.3
292,883 - BACOVA_02523 0.83 -1.4
292,898 - BACOVA_02523 0.89 -0.2
292,923 + -0.3
292,933 + +0.7
292,934 - +0.8
292,937 + +1.1
292,939 + -1.9
292,939 + +0.3
292,940 - -1.2
292,940 - +1.4
292,944 + -0.3
292,944 + -0.8
292,947 + -1.9
292,966 + -0.6
292,967 - -0.2
293,023 + +0.4
293,024 - +2.0
293,027 - BACOVA_02524 0.10 -1.6
293,048 + BACOVA_02524 0.16 +0.8
293,109 - BACOVA_02524 0.32 -1.1
293,129 + BACOVA_02524 0.38 -0.6
293,129 + BACOVA_02524 0.38 +1.4
293,141 + BACOVA_02524 0.41 -1.2
293,161 + BACOVA_02524 0.46 +0.2
293,181 + BACOVA_02524 0.51 +2.4
293,182 - BACOVA_02524 0.52 +2.0
293,189 + BACOVA_02524 0.54 -1.4
293,209 - BACOVA_02524 0.59 -2.3
293,233 - BACOVA_02524 0.65 +0.4
293,245 + BACOVA_02524 0.69 +0.9
293,327 - +0.2
293,327 - +0.8
293,327 - -0.7
293,350 + +0.2
293,355 - -0.5
293,363 - -0.2
293,395 + -0.9
293,395 + -0.2
293,416 + +1.1
293,417 - +1.6
293,417 - +0.4
293,426 - -0.6
293,436 + -1.2
293,454 + +0.4
293,460 - BACOVA_02525 0.10 -0.6
293,531 - BACOVA_02525 0.21 -1.5
293,541 - BACOVA_02525 0.22 +0.8
293,634 + BACOVA_02525 0.36 +0.1
293,681 + BACOVA_02525 0.42 +1.0
293,693 + BACOVA_02525 0.44 -0.2
293,698 + BACOVA_02525 0.45 -0.3
293,699 - BACOVA_02525 0.45 -0.1
293,725 - BACOVA_02525 0.49 +0.7
293,757 - BACOVA_02525 0.53 -2.2
293,757 - BACOVA_02525 0.53 +3.1
293,800 - BACOVA_02525 0.60 +1.8
293,811 + BACOVA_02525 0.61 -0.5
293,812 - BACOVA_02525 0.61 -1.9
293,816 + BACOVA_02525 0.62 -3.2
293,837 - BACOVA_02525 0.65 +0.8
293,911 - BACOVA_02525 0.76 -1.5
293,987 + BACOVA_02525 0.87 -1.9
294,027 + -0.2
294,032 + +0.6
294,033 - +0.8
294,048 - +0.6
294,060 - +0.2
294,061 + -0.9
294,062 - -0.4
294,071 + +3.5
294,071 + +2.0
294,080 + -2.8
294,108 + +1.0
294,109 - +1.1
294,109 - -2.6
294,113 - -0.1
294,113 - +0.4
294,113 - -0.2
294,152 + +1.0
294,152 + -0.6
294,153 - +1.0
294,153 - -0.9
294,158 + -0.2
294,158 + -1.2
294,158 + +2.6
294,159 - -2.8
294,190 - -0.1
294,201 - +0.4
294,349 + BACOVA_02526 0.19 -0.2
294,350 - BACOVA_02526 0.19 +0.2
294,359 + BACOVA_02526 0.20 +1.8

Or see this region's nucleotide sequence