Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02264

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02262 and BACOVA_02263 are separated by 111 nucleotidesBACOVA_02263 and BACOVA_02264 are separated by 74 nucleotidesBACOVA_02264 and BACOVA_02265 are separated by 111 nucleotidesBACOVA_02265 and BACOVA_02266 are separated by 70 nucleotides BACOVA_02262: BACOVA_02262 - hypothetical protein, at 38,810 to 39,433 _02262 BACOVA_02263: BACOVA_02263 - hypothetical protein, at 39,545 to 39,751 _02263 BACOVA_02264: BACOVA_02264 - radical SAM domain protein, at 39,826 to 41,184 _02264 BACOVA_02265: BACOVA_02265 - hypothetical protein, at 41,296 to 41,709 _02265 BACOVA_02266: BACOVA_02266 - pseudouridine synthase, RluA family, at 41,780 to 42,733 _02266 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.841 kb on - strandat 38.871 kb on + strandat 38.878 kb on - strand, within BACOVA_02262at 38.908 kb on + strand, within BACOVA_02262at 38.996 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.004 kb on - strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.006 kb on - strand, within BACOVA_02262at 39.029 kb on + strand, within BACOVA_02262at 39.092 kb on - strand, within BACOVA_02262at 39.116 kb on + strand, within BACOVA_02262at 39.123 kb on - strand, within BACOVA_02262at 39.132 kb on + strand, within BACOVA_02262at 39.161 kb on + strand, within BACOVA_02262at 39.162 kb on - strand, within BACOVA_02262at 39.174 kb on + strand, within BACOVA_02262at 39.175 kb on - strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.296 kb on - strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.381 kb on - strandat 39.393 kb on - strandat 39.434 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.505 kb on - strandat 39.511 kb on - strandat 39.520 kb on + strandat 39.543 kb on - strandat 39.560 kb on - strandat 39.579 kb on - strand, within BACOVA_02263at 39.647 kb on + strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.681 kb on - strand, within BACOVA_02263at 39.702 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.743 kb on + strandat 39.744 kb on - strandat 39.877 kb on + strandat 39.899 kb on - strandat 39.900 kb on + strandat 39.957 kb on + strandat 39.957 kb on + strandat 39.959 kb on + strandat 39.959 kb on + strandat 39.960 kb on - strandat 39.960 kb on - strandat 39.987 kb on - strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.059 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.109 kb on - strand, within BACOVA_02264at 40.145 kb on + strand, within BACOVA_02264at 40.153 kb on + strand, within BACOVA_02264at 40.190 kb on + strand, within BACOVA_02264at 40.207 kb on + strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.251 kb on - strand, within BACOVA_02264at 40.357 kb on - strand, within BACOVA_02264at 40.369 kb on + strand, within BACOVA_02264at 40.370 kb on - strand, within BACOVA_02264at 40.426 kb on + strand, within BACOVA_02264at 40.448 kb on - strand, within BACOVA_02264at 40.454 kb on - strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.508 kb on - strand, within BACOVA_02264at 40.568 kb on - strand, within BACOVA_02264at 40.617 kb on + strand, within BACOVA_02264at 40.736 kb on + strand, within BACOVA_02264at 40.737 kb on - strand, within BACOVA_02264at 40.859 kb on - strand, within BACOVA_02264at 40.872 kb on + strand, within BACOVA_02264at 40.897 kb on + strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.936 kb on + strand, within BACOVA_02264at 40.937 kb on - strand, within BACOVA_02264at 40.987 kb on + strand, within BACOVA_02264at 40.998 kb on + strand, within BACOVA_02264at 40.999 kb on - strand, within BACOVA_02264at 41.065 kb on - strandat 41.080 kb on - strandat 41.101 kb on - strandat 41.119 kb on + strandat 41.119 kb on + strandat 41.120 kb on - strandat 41.120 kb on - strandat 41.157 kb on + strandat 41.161 kb on + strandat 41.195 kb on + strandat 41.240 kb on + strandat 41.240 kb on + strandat 41.243 kb on - strandat 41.245 kb on + strandat 41.246 kb on - strandat 41.252 kb on - strandat 41.270 kb on + strandat 41.295 kb on + strandat 41.307 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.342 kb on + strand, within BACOVA_02265at 41.342 kb on + strand, within BACOVA_02265at 41.355 kb on + strand, within BACOVA_02265at 41.356 kb on - strand, within BACOVA_02265at 41.388 kb on + strand, within BACOVA_02265at 41.389 kb on - strand, within BACOVA_02265at 41.408 kb on - strand, within BACOVA_02265at 41.408 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.413 kb on - strand, within BACOVA_02265at 41.437 kb on + strand, within BACOVA_02265at 41.437 kb on + strand, within BACOVA_02265at 41.438 kb on - strand, within BACOVA_02265at 41.439 kb on + strand, within BACOVA_02265at 41.439 kb on + strand, within BACOVA_02265at 41.440 kb on - strand, within BACOVA_02265at 41.454 kb on + strand, within BACOVA_02265at 41.454 kb on + strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.470 kb on - strand, within BACOVA_02265at 41.551 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.591 kb on - strand, within BACOVA_02265at 41.598 kb on + strand, within BACOVA_02265at 41.598 kb on + strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.645 kb on - strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.650 kb on - strand, within BACOVA_02265at 41.650 kb on - strand, within BACOVA_02265at 41.670 kb on + strandat 41.676 kb on - strandat 41.676 kb on - strandat 41.695 kb on - strandat 41.695 kb on - strandat 41.713 kb on - strandat 41.748 kb on - strandat 41.772 kb on - strandat 41.777 kb on - strandat 41.925 kb on + strand, within BACOVA_02266at 41.941 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.954 kb on + strand, within BACOVA_02266at 41.955 kb on - strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.048 kb on + strand, within BACOVA_02266at 42.049 kb on - strand, within BACOVA_02266at 42.059 kb on - strand, within BACOVA_02266at 42.082 kb on - strand, within BACOVA_02266at 42.096 kb on - strand, within BACOVA_02266at 42.100 kb on - strand, within BACOVA_02266at 42.100 kb on - strand, within BACOVA_02266at 42.109 kb on + strand, within BACOVA_02266at 42.133 kb on + strand, within BACOVA_02266at 42.133 kb on + strand, within BACOVA_02266at 42.151 kb on + strand, within BACOVA_02266at 42.170 kb on + strand, within BACOVA_02266at 42.170 kb on + strand, within BACOVA_02266at 42.174 kb on + strand, within BACOVA_02266

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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38,841 - +0.8
38,871 + +2.0
38,878 - BACOVA_02262 0.11 +2.5
38,908 + BACOVA_02262 0.16 +0.2
38,996 + BACOVA_02262 0.30 +1.1
39,003 + BACOVA_02262 0.31 +3.0
39,003 + BACOVA_02262 0.31 +0.7
39,004 - BACOVA_02262 0.31 -0.9
39,005 + BACOVA_02262 0.31 -1.1
39,005 + BACOVA_02262 0.31 +1.7
39,006 - BACOVA_02262 0.31 +0.1
39,029 + BACOVA_02262 0.35 +2.9
39,092 - BACOVA_02262 0.45 -0.5
39,116 + BACOVA_02262 0.49 +0.3
39,123 - BACOVA_02262 0.50 +0.2
39,132 + BACOVA_02262 0.52 +1.2
39,161 + BACOVA_02262 0.56 -1.3
39,162 - BACOVA_02262 0.56 +1.9
39,174 + BACOVA_02262 0.58 -0.2
39,175 - BACOVA_02262 0.58 +0.0
39,261 + BACOVA_02262 0.72 -1.9
39,261 + BACOVA_02262 0.72 +1.8
39,261 + BACOVA_02262 0.72 -1.4
39,262 - BACOVA_02262 0.72 +1.4
39,262 - BACOVA_02262 0.72 -0.3
39,296 - BACOVA_02262 0.78 -1.4
39,299 + BACOVA_02262 0.78 +2.4
39,299 + BACOVA_02262 0.78 -0.7
39,381 - +0.8
39,393 - -0.4
39,434 - +1.6
39,458 + +2.4
39,458 + -0.6
39,459 - -0.7
39,459 - -0.2
39,505 - -1.4
39,511 - +0.4
39,520 + -1.7
39,543 - +0.1
39,560 - -1.8
39,579 - BACOVA_02263 0.16 +0.3
39,647 + BACOVA_02263 0.49 -0.8
39,648 - BACOVA_02263 0.50 -1.3
39,648 - BACOVA_02263 0.50 -1.5
39,681 - BACOVA_02263 0.66 +0.4
39,702 - BACOVA_02263 0.76 +0.6
39,720 - BACOVA_02263 0.85 +0.9
39,720 - BACOVA_02263 0.85 -0.4
39,720 - BACOVA_02263 0.85 +0.4
39,743 + +0.8
39,744 - +0.8
39,877 + -0.3
39,899 - +1.0
39,900 + -0.6
39,957 + -0.1
39,957 + -1.0
39,959 + +0.6
39,959 + +0.3
39,960 - +0.4
39,960 - -0.9
39,987 - BACOVA_02264 0.12 +2.0
40,009 + BACOVA_02264 0.13 -0.9
40,009 + BACOVA_02264 0.13 +0.2
40,009 + BACOVA_02264 0.13 +0.0
40,041 - BACOVA_02264 0.16 -0.7
40,041 - BACOVA_02264 0.16 +0.3
40,059 - BACOVA_02264 0.17 +0.3
40,064 - BACOVA_02264 0.18 -0.1
40,064 - BACOVA_02264 0.18 +0.6
40,064 - BACOVA_02264 0.18 -0.8
40,064 - BACOVA_02264 0.18 -0.1
40,109 - BACOVA_02264 0.21 -0.5
40,145 + BACOVA_02264 0.23 -0.1
40,153 + BACOVA_02264 0.24 +0.4
40,190 + BACOVA_02264 0.27 -1.2
40,207 + BACOVA_02264 0.28 -2.0
40,211 - BACOVA_02264 0.28 -1.2
40,211 - BACOVA_02264 0.28 +0.4
40,211 - BACOVA_02264 0.28 +0.3
40,246 + BACOVA_02264 0.31 +2.0
40,246 + BACOVA_02264 0.31 -1.6
40,246 + BACOVA_02264 0.31 -1.3
40,246 + BACOVA_02264 0.31 -1.6
40,251 - BACOVA_02264 0.31 -1.6
40,357 - BACOVA_02264 0.39 -1.8
40,369 + BACOVA_02264 0.40 +3.0
40,370 - BACOVA_02264 0.40 -1.3
40,426 + BACOVA_02264 0.44 -0.3
40,448 - BACOVA_02264 0.46 +0.0
40,454 - BACOVA_02264 0.46 +0.2
40,507 + BACOVA_02264 0.50 +0.4
40,507 + BACOVA_02264 0.50 +0.2
40,508 - BACOVA_02264 0.50 +0.1
40,568 - BACOVA_02264 0.55 -1.6
40,617 + BACOVA_02264 0.58 +0.1
40,736 + BACOVA_02264 0.67 -0.0
40,737 - BACOVA_02264 0.67 +2.4
40,859 - BACOVA_02264 0.76 +1.8
40,872 + BACOVA_02264 0.77 +0.3
40,897 + BACOVA_02264 0.79 +1.4
40,921 - BACOVA_02264 0.81 -0.4
40,921 - BACOVA_02264 0.81 +0.3
40,921 - BACOVA_02264 0.81 +0.3
40,936 + BACOVA_02264 0.82 +1.8
40,937 - BACOVA_02264 0.82 -0.9
40,987 + BACOVA_02264 0.85 +0.0
40,998 + BACOVA_02264 0.86 +1.6
40,999 - BACOVA_02264 0.86 -1.2
41,065 - -0.6
41,080 - -2.6
41,101 - -0.4
41,119 + +2.4
41,119 + +0.4
41,120 - +2.2
41,120 - +2.8
41,157 + -0.1
41,161 + -0.2
41,195 + -0.2
41,240 + -1.2
41,240 + +0.6
41,243 - -0.7
41,245 + -1.4
41,246 - +0.8
41,252 - -0.6
41,270 + -0.3
41,295 + -0.6
41,307 - +0.1
41,315 - +1.9
41,315 - -0.5
41,342 + BACOVA_02265 0.11 +0.8
41,342 + BACOVA_02265 0.11 +3.7
41,355 + BACOVA_02265 0.14 -0.9
41,356 - BACOVA_02265 0.14 +0.4
41,388 + BACOVA_02265 0.22 +0.8
41,389 - BACOVA_02265 0.22 +2.4
41,408 - BACOVA_02265 0.27 +1.4
41,408 - BACOVA_02265 0.27 -0.8
41,410 - BACOVA_02265 0.28 +0.1
41,410 - BACOVA_02265 0.28 +0.9
41,410 - BACOVA_02265 0.28 +1.6
41,413 - BACOVA_02265 0.28 +1.0
41,437 + BACOVA_02265 0.34 +1.6
41,437 + BACOVA_02265 0.34 +3.3
41,438 - BACOVA_02265 0.34 -0.0
41,439 + BACOVA_02265 0.35 +1.0
41,439 + BACOVA_02265 0.35 -0.4
41,440 - BACOVA_02265 0.35 -0.9
41,454 + BACOVA_02265 0.38 +1.4
41,454 + BACOVA_02265 0.38 -0.6
41,455 - BACOVA_02265 0.38 +0.4
41,455 - BACOVA_02265 0.38 -0.6
41,455 - BACOVA_02265 0.38 +3.6
41,470 - BACOVA_02265 0.42 +1.0
41,551 + BACOVA_02265 0.62 -0.9
41,553 + BACOVA_02265 0.62 -0.9
41,553 + BACOVA_02265 0.62 -0.5
41,553 + BACOVA_02265 0.62 -0.4
41,590 + BACOVA_02265 0.71 +1.9
41,590 + BACOVA_02265 0.71 -0.2
41,590 + BACOVA_02265 0.71 -0.7
41,591 - BACOVA_02265 0.71 -0.2
41,598 + BACOVA_02265 0.73 -1.6
41,598 + BACOVA_02265 0.73 +1.4
41,599 - BACOVA_02265 0.73 +1.2
41,599 - BACOVA_02265 0.73 +0.3
41,599 - BACOVA_02265 0.73 +0.4
41,599 - BACOVA_02265 0.73 +1.2
41,645 - BACOVA_02265 0.84 +0.7
41,649 + BACOVA_02265 0.85 +1.4
41,649 + BACOVA_02265 0.85 -0.7
41,649 + BACOVA_02265 0.85 -0.2
41,649 + BACOVA_02265 0.85 -1.2
41,650 - BACOVA_02265 0.86 +0.8
41,650 - BACOVA_02265 0.86 -0.2
41,670 + +0.8
41,676 - +0.1
41,676 - +0.0
41,695 - -0.6
41,695 - +0.2
41,713 - -0.6
41,748 - +0.8
41,772 - -2.3
41,777 - +2.3
41,925 + BACOVA_02266 0.15 -0.2
41,941 + BACOVA_02266 0.17 -2.0
41,944 + BACOVA_02266 0.17 -2.5
41,944 + BACOVA_02266 0.17 -0.7
41,944 + BACOVA_02266 0.17 -0.3
41,945 - BACOVA_02266 0.17 -2.2
41,945 - BACOVA_02266 0.17 -0.2
41,945 - BACOVA_02266 0.17 -0.6
41,954 + BACOVA_02266 0.18 +0.7
41,955 - BACOVA_02266 0.18 -0.6
42,046 + BACOVA_02266 0.28 +0.8
42,046 + BACOVA_02266 0.28 -1.6
42,046 + BACOVA_02266 0.28 +0.6
42,048 + BACOVA_02266 0.28 -0.9
42,049 - BACOVA_02266 0.28 -0.6
42,059 - BACOVA_02266 0.29 -0.2
42,082 - BACOVA_02266 0.32 -0.8
42,096 - BACOVA_02266 0.33 -0.6
42,100 - BACOVA_02266 0.34 -0.5
42,100 - BACOVA_02266 0.34 -0.7
42,109 + BACOVA_02266 0.34 -1.2
42,133 + BACOVA_02266 0.37 -0.2
42,133 + BACOVA_02266 0.37 +0.8
42,151 + BACOVA_02266 0.39 +0.1
42,170 + BACOVA_02266 0.41 -0.6
42,170 + BACOVA_02266 0.41 -1.6
42,174 + BACOVA_02266 0.41 -0.3

Or see this region's nucleotide sequence