Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01816

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01815 and BACOVA_01816 overlap by 43 nucleotidesBACOVA_01816 and BACOVA_01817 are separated by 44 nucleotidesBACOVA_01817 and BACOVA_01818 are separated by 91 nucleotides BACOVA_01815: BACOVA_01815 - TonB-linked outer membrane protein, SusC/RagA family, at 249,709 to 252,798 _01815 BACOVA_01816: BACOVA_01816 - N-acylglucosamine 2-epimerase, at 252,756 to 254,021 _01816 BACOVA_01817: BACOVA_01817 - putative arabinose-proton symporter, at 254,066 to 254,914 _01817 BACOVA_01818: BACOVA_01818 - sugar transporter family protein, at 255,006 to 255,467 _01818 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 251.799 kb on + strand, within BACOVA_01815at 251.800 kb on - strand, within BACOVA_01815at 251.800 kb on - strand, within BACOVA_01815at 251.805 kb on + strand, within BACOVA_01815at 251.851 kb on - strand, within BACOVA_01815at 251.851 kb on - strand, within BACOVA_01815at 251.856 kb on - strand, within BACOVA_01815at 251.974 kb on + strand, within BACOVA_01815at 251.975 kb on - strand, within BACOVA_01815at 252.039 kb on + strand, within BACOVA_01815at 252.045 kb on + strand, within BACOVA_01815at 252.046 kb on - strand, within BACOVA_01815at 252.046 kb on - strand, within BACOVA_01815at 252.090 kb on + strand, within BACOVA_01815at 252.100 kb on - strand, within BACOVA_01815at 252.100 kb on - strand, within BACOVA_01815at 252.165 kb on + strand, within BACOVA_01815at 252.186 kb on + strand, within BACOVA_01815at 252.303 kb on + strand, within BACOVA_01815at 252.329 kb on - strand, within BACOVA_01815at 252.340 kb on + strand, within BACOVA_01815at 252.340 kb on + strand, within BACOVA_01815at 252.366 kb on + strand, within BACOVA_01815at 252.437 kb on - strand, within BACOVA_01815at 252.475 kb on + strand, within BACOVA_01815at 252.476 kb on - strand, within BACOVA_01815at 252.482 kb on - strand, within BACOVA_01815at 252.484 kb on + strand, within BACOVA_01815at 252.527 kb on + strandat 252.544 kb on - strandat 252.557 kb on - strandat 252.565 kb on - strandat 252.565 kb on - strandat 252.570 kb on - strandat 252.600 kb on + strandat 252.601 kb on - strandat 252.621 kb on + strandat 252.621 kb on + strandat 252.621 kb on + strandat 252.621 kb on + strandat 252.622 kb on - strandat 252.622 kb on - strandat 252.637 kb on + strandat 252.638 kb on - strandat 252.638 kb on - strandat 252.688 kb on + strandat 252.688 kb on + strandat 252.688 kb on + strandat 252.688 kb on + strandat 252.703 kb on + strandat 252.754 kb on - strandat 252.758 kb on - strandat 252.758 kb on - strandat 252.803 kb on - strandat 252.803 kb on - strandat 252.803 kb on - strandat 252.803 kb on - strandat 252.849 kb on + strandat 252.855 kb on + strandat 252.862 kb on - strandat 252.883 kb on + strand, within BACOVA_01816at 252.889 kb on + strand, within BACOVA_01816at 252.890 kb on - strand, within BACOVA_01816at 252.890 kb on - strand, within BACOVA_01816at 252.986 kb on - strand, within BACOVA_01816at 253.004 kb on + strand, within BACOVA_01816at 253.091 kb on + strand, within BACOVA_01816at 253.121 kb on + strand, within BACOVA_01816at 253.122 kb on - strand, within BACOVA_01816at 253.122 kb on - strand, within BACOVA_01816at 253.186 kb on - strand, within BACOVA_01816at 253.269 kb on + strand, within BACOVA_01816at 253.292 kb on + strand, within BACOVA_01816at 253.292 kb on + strand, within BACOVA_01816at 253.337 kb on + strand, within BACOVA_01816at 253.337 kb on + strand, within BACOVA_01816at 253.337 kb on + strand, within BACOVA_01816at 253.338 kb on - strand, within BACOVA_01816at 253.363 kb on + strand, within BACOVA_01816at 253.460 kb on + strand, within BACOVA_01816at 253.461 kb on - strand, within BACOVA_01816at 253.503 kb on - strand, within BACOVA_01816at 253.531 kb on + strand, within BACOVA_01816at 253.550 kb on + strand, within BACOVA_01816at 253.550 kb on + strand, within BACOVA_01816at 253.586 kb on + strand, within BACOVA_01816at 253.596 kb on + strand, within BACOVA_01816at 253.598 kb on + strand, within BACOVA_01816at 253.599 kb on - strand, within BACOVA_01816at 253.599 kb on - strand, within BACOVA_01816at 253.652 kb on + strand, within BACOVA_01816at 253.654 kb on + strand, within BACOVA_01816at 253.673 kb on - strand, within BACOVA_01816at 253.791 kb on - strand, within BACOVA_01816at 253.791 kb on - strand, within BACOVA_01816at 253.843 kb on + strand, within BACOVA_01816at 253.843 kb on + strand, within BACOVA_01816at 253.966 kb on - strandat 254.013 kb on - strandat 254.021 kb on + strandat 254.022 kb on - strandat 254.026 kb on - strandat 254.028 kb on - strandat 254.036 kb on - strandat 254.049 kb on + strandat 254.063 kb on + strandat 254.067 kb on + strandat 254.362 kb on - strand, within BACOVA_01817

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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251,799 + BACOVA_01815 0.68 +1.3
251,800 - BACOVA_01815 0.68 -0.1
251,800 - BACOVA_01815 0.68 +1.7
251,805 + BACOVA_01815 0.68 -0.4
251,851 - BACOVA_01815 0.69 +0.5
251,851 - BACOVA_01815 0.69 +0.5
251,856 - BACOVA_01815 0.69 +0.9
251,974 + BACOVA_01815 0.73 +0.2
251,975 - BACOVA_01815 0.73 -0.5
252,039 + BACOVA_01815 0.75 +0.1
252,045 + BACOVA_01815 0.76 -0.5
252,046 - BACOVA_01815 0.76 +3.4
252,046 - BACOVA_01815 0.76 +0.2
252,090 + BACOVA_01815 0.77 -1.9
252,100 - BACOVA_01815 0.77 -0.1
252,100 - BACOVA_01815 0.77 +0.9
252,165 + BACOVA_01815 0.79 +2.6
252,186 + BACOVA_01815 0.80 -0.7
252,303 + BACOVA_01815 0.84 +1.5
252,329 - BACOVA_01815 0.85 +0.5
252,340 + BACOVA_01815 0.85 -3.0
252,340 + BACOVA_01815 0.85 +2.9
252,366 + BACOVA_01815 0.86 +0.6
252,437 - BACOVA_01815 0.88 -0.9
252,475 + BACOVA_01815 0.90 +0.0
252,476 - BACOVA_01815 0.90 +1.2
252,482 - BACOVA_01815 0.90 +0.9
252,484 + BACOVA_01815 0.90 -1.0
252,527 + +0.7
252,544 - -0.5
252,557 - -0.1
252,565 - +1.5
252,565 - -1.1
252,570 - +2.0
252,600 + -0.8
252,601 - +3.9
252,621 + -0.5
252,621 + +1.7
252,621 + -1.1
252,621 + -1.4
252,622 - -1.9
252,622 - +1.7
252,637 + +1.0
252,638 - +1.6
252,638 - +1.2
252,688 + -0.1
252,688 + -1.0
252,688 + -0.9
252,688 + -0.9
252,703 + +0.3
252,754 - +1.6
252,758 - +1.5
252,758 - -0.7
252,803 - -0.5
252,803 - -0.3
252,803 - -1.0
252,803 - -0.5
252,849 + -1.2
252,855 + +0.7
252,862 - +0.0
252,883 + BACOVA_01816 0.10 -1.0
252,889 + BACOVA_01816 0.11 +0.0
252,890 - BACOVA_01816 0.11 +2.0
252,890 - BACOVA_01816 0.11 +0.9
252,986 - BACOVA_01816 0.18 -0.7
253,004 + BACOVA_01816 0.20 -1.5
253,091 + BACOVA_01816 0.26 -1.0
253,121 + BACOVA_01816 0.29 -0.1
253,122 - BACOVA_01816 0.29 +0.6
253,122 - BACOVA_01816 0.29 +0.7
253,186 - BACOVA_01816 0.34 -2.9
253,269 + BACOVA_01816 0.41 -0.9
253,292 + BACOVA_01816 0.42 +2.0
253,292 + BACOVA_01816 0.42 -2.0
253,337 + BACOVA_01816 0.46 +0.9
253,337 + BACOVA_01816 0.46 +0.5
253,337 + BACOVA_01816 0.46 -0.4
253,338 - BACOVA_01816 0.46 +1.9
253,363 + BACOVA_01816 0.48 +1.3
253,460 + BACOVA_01816 0.56 +0.5
253,461 - BACOVA_01816 0.56 -1.3
253,503 - BACOVA_01816 0.59 -1.1
253,531 + BACOVA_01816 0.61 -1.5
253,550 + BACOVA_01816 0.63 +0.1
253,550 + BACOVA_01816 0.63 +0.2
253,586 + BACOVA_01816 0.66 -0.7
253,596 + BACOVA_01816 0.66 +0.6
253,598 + BACOVA_01816 0.67 -0.3
253,599 - BACOVA_01816 0.67 +2.5
253,599 - BACOVA_01816 0.67 -1.1
253,652 + BACOVA_01816 0.71 -1.0
253,654 + BACOVA_01816 0.71 +0.5
253,673 - BACOVA_01816 0.72 -0.6
253,791 - BACOVA_01816 0.82 -0.3
253,791 - BACOVA_01816 0.82 +0.1
253,843 + BACOVA_01816 0.86 -0.9
253,843 + BACOVA_01816 0.86 -0.7
253,966 - +2.0
254,013 - +0.7
254,021 + +1.3
254,022 - +0.5
254,026 - -0.2
254,028 - -0.9
254,036 - -0.9
254,049 + -1.9
254,063 + +1.8
254,067 + -0.0
254,362 - BACOVA_01817 0.35 +2.3

Or see this region's nucleotide sequence