Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01729 and BACOVA_01730 are separated by 29 nucleotides BACOVA_01730 and BACOVA_01731 are separated by 151 nucleotides BACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides BACOVA_01732 and BACOVA_01733 are separated by 34 nucleotides
BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351
_01729
BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010
_01730
BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311
_01731
BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427
_01732
BACOVA_01733: BACOVA_01733 - hypothetical protein, at 156,462 to 157,868
_01733
Position (kb) 156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.183 kb on - strand at 155.266 kb on - strand at 155.270 kb on - strand at 155.279 kb on - strand at 155.331 kb on + strand at 155.364 kb on + strand at 155.371 kb on + strand at 155.378 kb on + strand at 155.460 kb on - strand, within BACOVA_01730 at 155.506 kb on - strand, within BACOVA_01730 at 155.521 kb on - strand, within BACOVA_01730 at 155.540 kb on - strand, within BACOVA_01730 at 155.586 kb on + strand, within BACOVA_01730 at 155.636 kb on + strand, within BACOVA_01730 at 155.681 kb on + strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.717 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.820 kb on - strand, within BACOVA_01730 at 155.920 kb on + strand, within BACOVA_01730 at 155.936 kb on - strand, within BACOVA_01730 at 155.985 kb on + strand at 155.986 kb on - strand at 156.011 kb on - strand at 156.021 kb on - strand at 156.021 kb on - strand at 156.095 kb on + strand at 156.222 kb on - strand, within BACOVA_01731 at 156.229 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.248 kb on + strand, within BACOVA_01731 at 156.257 kb on - strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.276 kb on + strand, within BACOVA_01731 at 156.320 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.426 kb on - strand at 156.482 kb on + strand at 156.485 kb on + strand at 156.494 kb on - strand at 156.535 kb on + strand at 156.586 kb on - strand at 156.586 kb on - strand at 156.593 kb on - strand at 156.593 kb on - strand at 156.625 kb on + strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.895 kb on + strand, within BACOVA_01733 at 156.973 kb on + strand, within BACOVA_01733 at 157.014 kb on - strand, within BACOVA_01733 at 157.026 kb on + strand, within BACOVA_01733 at 157.027 kb on - strand, within BACOVA_01733 at 157.027 kb on - strand, within BACOVA_01733 at 157.056 kb on + strand, within BACOVA_01733 at 157.098 kb on - strand, within BACOVA_01733 at 157.098 kb on - strand, within BACOVA_01733 at 157.144 kb on - strand, within BACOVA_01733
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 155,183 - -0.3 155,266 - +0.2 155,270 - +0.1 155,279 - -0.7 155,331 + +0.9 155,364 + +1.1 155,371 + +0.3 155,378 + +1.3 155,460 - BACOVA_01730 0.13 +0.5 155,506 - BACOVA_01730 0.20 -1.1 155,521 - BACOVA_01730 0.22 -0.9 155,540 - BACOVA_01730 0.25 +2.3 155,586 + BACOVA_01730 0.33 +0.9 155,636 + BACOVA_01730 0.40 +0.1 155,681 + BACOVA_01730 0.48 +1.7 155,695 - BACOVA_01730 0.50 -0.1 155,695 - BACOVA_01730 0.50 +0.3 155,717 - BACOVA_01730 0.53 -0.1 155,791 - BACOVA_01730 0.65 +0.5 155,791 - BACOVA_01730 0.65 +0.5 155,791 - BACOVA_01730 0.65 -0.1 155,820 - BACOVA_01730 0.70 +0.5 155,920 + BACOVA_01730 0.86 -0.1 155,936 - BACOVA_01730 0.88 -0.5 155,985 + +1.2 155,986 - -0.7 156,011 - +0.1 156,021 - -0.5 156,021 - +1.0 156,095 + -0.1 156,222 - BACOVA_01731 0.40 -0.2 156,229 + BACOVA_01731 0.45 +0.9 156,242 + BACOVA_01731 0.53 -0.1 156,242 + BACOVA_01731 0.53 -0.9 156,248 + BACOVA_01731 0.57 -1.7 156,257 - BACOVA_01731 0.63 -0.1 156,260 + BACOVA_01731 0.65 -0.1 156,260 + BACOVA_01731 0.65 -0.0 156,261 - BACOVA_01731 0.66 -0.1 156,261 - BACOVA_01731 0.66 -0.5 156,276 + BACOVA_01731 0.76 -0.9 156,320 - BACOVA_01732 0.10 +1.5 156,408 - BACOVA_01732 0.83 +2.0 156,408 - BACOVA_01732 0.83 +0.5 156,426 - -1.1 156,482 + -0.1 156,485 + +1.0 156,494 - -1.3 156,535 + -0.1 156,586 - -0.6 156,586 - +0.5 156,593 - +0.0 156,593 - -0.5 156,625 + BACOVA_01733 0.12 +0.9 156,626 - BACOVA_01733 0.12 -1.0 156,626 - BACOVA_01733 0.12 +3.2 156,630 + BACOVA_01733 0.12 +0.3 156,630 + BACOVA_01733 0.12 +2.0 156,737 - BACOVA_01733 0.20 +0.5 156,737 - BACOVA_01733 0.20 -0.3 156,895 + BACOVA_01733 0.31 -2.4 156,973 + BACOVA_01733 0.36 -0.5 157,014 - BACOVA_01733 0.39 +0.3 157,026 + BACOVA_01733 0.40 +0.1 157,027 - BACOVA_01733 0.40 +0.1 157,027 - BACOVA_01733 0.40 -0.9 157,056 + BACOVA_01733 0.42 +2.8 157,098 - BACOVA_01733 0.45 +0.0 157,098 - BACOVA_01733 0.45 -1.5 157,144 - BACOVA_01733 0.48 -2.4
Or see this region's nucleotide sequence