Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01553

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01552 and BACOVA_01553 are separated by 187 nucleotidesBACOVA_01553 and BACOVA_01554 are separated by 452 nucleotides BACOVA_01552: BACOVA_01552 - transcriptional regulator, AraC family, at 51,630 to 52,544 _01552 BACOVA_01553: BACOVA_01553 - site-specific recombinase, phage integrase family, at 52,732 to 54,063 _01553 BACOVA_01554: BACOVA_01554 - hypothetical protein, at 54,516 to 55,001 _01554 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.764 kb on + strand, within BACOVA_01552at 51.764 kb on + strand, within BACOVA_01552at 51.765 kb on - strand, within BACOVA_01552at 51.765 kb on - strand, within BACOVA_01552at 51.813 kb on - strand, within BACOVA_01552at 51.860 kb on - strand, within BACOVA_01552at 51.962 kb on - strand, within BACOVA_01552at 51.982 kb on + strand, within BACOVA_01552at 51.982 kb on + strand, within BACOVA_01552at 51.999 kb on + strand, within BACOVA_01552at 51.999 kb on + strand, within BACOVA_01552at 52.000 kb on - strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.386 kb on - strand, within BACOVA_01552at 52.386 kb on - strand, within BACOVA_01552at 52.387 kb on + strand, within BACOVA_01552at 52.387 kb on + strand, within BACOVA_01552at 52.453 kb on - strandat 52.453 kb on - strandat 52.453 kb on - strandat 52.503 kb on + strandat 52.512 kb on + strandat 52.520 kb on + strandat 52.520 kb on + strandat 52.526 kb on + strandat 52.526 kb on + strandat 52.536 kb on - strandat 52.553 kb on - strandat 52.574 kb on - strandat 52.578 kb on + strandat 52.582 kb on + strandat 52.638 kb on + strandat 52.661 kb on - strandat 52.686 kb on + strandat 52.754 kb on - strandat 52.754 kb on - strandat 52.799 kb on + strandat 52.799 kb on + strandat 52.800 kb on - strandat 52.842 kb on + strandat 52.843 kb on - strandat 52.905 kb on - strand, within BACOVA_01553at 52.966 kb on - strand, within BACOVA_01553at 53.051 kb on + strand, within BACOVA_01553at 53.052 kb on - strand, within BACOVA_01553at 53.052 kb on - strand, within BACOVA_01553at 53.113 kb on - strand, within BACOVA_01553at 53.124 kb on - strand, within BACOVA_01553at 53.124 kb on - strand, within BACOVA_01553at 53.195 kb on + strand, within BACOVA_01553at 53.196 kb on - strand, within BACOVA_01553at 53.210 kb on + strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.274 kb on + strand, within BACOVA_01553at 53.379 kb on + strand, within BACOVA_01553at 53.381 kb on + strand, within BACOVA_01553at 53.405 kb on + strand, within BACOVA_01553at 53.405 kb on + strand, within BACOVA_01553at 53.408 kb on + strand, within BACOVA_01553at 53.413 kb on + strand, within BACOVA_01553at 53.414 kb on - strand, within BACOVA_01553at 53.419 kb on - strand, within BACOVA_01553at 53.436 kb on + strand, within BACOVA_01553at 53.439 kb on + strand, within BACOVA_01553at 53.441 kb on + strand, within BACOVA_01553at 53.442 kb on - strand, within BACOVA_01553at 53.601 kb on + strand, within BACOVA_01553at 53.602 kb on - strand, within BACOVA_01553at 53.603 kb on + strand, within BACOVA_01553at 53.611 kb on + strand, within BACOVA_01553at 53.615 kb on + strand, within BACOVA_01553at 53.616 kb on - strand, within BACOVA_01553at 53.671 kb on - strand, within BACOVA_01553at 53.671 kb on - strand, within BACOVA_01553at 53.794 kb on - strand, within BACOVA_01553at 53.794 kb on - strand, within BACOVA_01553at 53.845 kb on - strand, within BACOVA_01553at 53.846 kb on + strand, within BACOVA_01553at 53.887 kb on + strand, within BACOVA_01553at 53.887 kb on + strand, within BACOVA_01553at 53.894 kb on + strand, within BACOVA_01553at 53.895 kb on - strand, within BACOVA_01553at 53.931 kb on + strandat 53.931 kb on + strandat 53.932 kb on - strandat 53.952 kb on + strandat 53.952 kb on + strandat 53.952 kb on + strandat 53.953 kb on - strandat 53.953 kb on - strandat 53.997 kb on + strandat 54.001 kb on + strandat 54.076 kb on + strandat 54.087 kb on + strandat 54.087 kb on + strandat 54.088 kb on - strandat 54.143 kb on + strandat 54.153 kb on + strandat 54.167 kb on - strandat 54.167 kb on - strandat 54.213 kb on + strandat 54.285 kb on - strandat 54.522 kb on - strandat 54.547 kb on - strandat 54.547 kb on - strandat 54.559 kb on - strandat 54.559 kb on - strandat 54.559 kb on - strandat 54.560 kb on + strandat 54.560 kb on + strandat 54.560 kb on + strandat 54.560 kb on + strandat 54.560 kb on + strandat 54.560 kb on + strandat 54.561 kb on - strandat 54.561 kb on - strandat 54.561 kb on - strandat 54.564 kb on + strandat 54.564 kb on + strandat 54.564 kb on + strandat 54.565 kb on - strand, within BACOVA_01554at 54.565 kb on - strand, within BACOVA_01554at 54.660 kb on + strand, within BACOVA_01554at 54.725 kb on + strand, within BACOVA_01554at 54.780 kb on + strand, within BACOVA_01554at 54.781 kb on - strand, within BACOVA_01554at 54.888 kb on + strand, within BACOVA_01554at 54.888 kb on + strand, within BACOVA_01554at 54.888 kb on + strand, within BACOVA_01554at 54.889 kb on - strand, within BACOVA_01554at 54.889 kb on - strand, within BACOVA_01554at 54.889 kb on - strand, within BACOVA_01554at 54.889 kb on - strand, within BACOVA_01554at 54.889 kb on - strand, within BACOVA_01554at 54.891 kb on - strand, within BACOVA_01554at 54.893 kb on - strand, within BACOVA_01554at 54.917 kb on - strand, within BACOVA_01554at 54.922 kb on - strand, within BACOVA_01554at 54.922 kb on - strand, within BACOVA_01554at 55.004 kb on - strandat 55.010 kb on + strandat 55.011 kb on - strandat 55.011 kb on - strandat 55.016 kb on - strandat 55.019 kb on + strandat 55.022 kb on + strandat 55.023 kb on - strandat 55.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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51,764 + BACOVA_01552 0.15 -0.6
51,764 + BACOVA_01552 0.15 -0.2
51,765 - BACOVA_01552 0.15 +0.1
51,765 - BACOVA_01552 0.15 -1.4
51,813 - BACOVA_01552 0.20 +1.4
51,860 - BACOVA_01552 0.25 +0.7
51,962 - BACOVA_01552 0.36 +0.1
51,982 + BACOVA_01552 0.38 -0.3
51,982 + BACOVA_01552 0.38 -0.3
51,999 + BACOVA_01552 0.40 +0.1
51,999 + BACOVA_01552 0.40 +0.1
52,000 - BACOVA_01552 0.40 +1.4
52,240 + BACOVA_01552 0.67 -0.4
52,240 + BACOVA_01552 0.67 -0.9
52,240 + BACOVA_01552 0.67 +0.5
52,240 + BACOVA_01552 0.67 +0.1
52,382 - BACOVA_01552 0.82 +1.4
52,382 - BACOVA_01552 0.82 -0.2
52,382 - BACOVA_01552 0.82 +0.5
52,382 - BACOVA_01552 0.82 -0.3
52,385 + BACOVA_01552 0.83 -0.5
52,385 + BACOVA_01552 0.83 +0.4
52,385 + BACOVA_01552 0.83 +2.6
52,385 + BACOVA_01552 0.83 -2.8
52,386 - BACOVA_01552 0.83 -0.2
52,386 - BACOVA_01552 0.83 +0.7
52,387 + BACOVA_01552 0.83 -1.2
52,387 + BACOVA_01552 0.83 -0.1
52,453 - +0.1
52,453 - +0.1
52,453 - -0.6
52,503 + +1.4
52,512 + -0.5
52,520 + -1.2
52,520 + +2.1
52,526 + -0.6
52,526 + +1.1
52,536 - -0.0
52,553 - +0.2
52,574 - -0.9
52,578 + +3.0
52,582 + -0.2
52,638 + -0.2
52,661 - +0.3
52,686 + +0.8
52,754 - -0.2
52,754 - +2.7
52,799 + +0.3
52,799 + +0.5
52,800 - +0.1
52,842 + -0.7
52,843 - +0.3
52,905 - BACOVA_01553 0.13 -0.9
52,966 - BACOVA_01553 0.18 +0.7
53,051 + BACOVA_01553 0.24 -0.6
53,052 - BACOVA_01553 0.24 +0.0
53,052 - BACOVA_01553 0.24 -0.1
53,113 - BACOVA_01553 0.29 -0.6
53,124 - BACOVA_01553 0.29 +0.1
53,124 - BACOVA_01553 0.29 -0.3
53,195 + BACOVA_01553 0.35 +0.1
53,196 - BACOVA_01553 0.35 +1.4
53,210 + BACOVA_01553 0.36 +1.2
53,211 - BACOVA_01553 0.36 -1.5
53,211 - BACOVA_01553 0.36 +0.3
53,211 - BACOVA_01553 0.36 +1.0
53,211 - BACOVA_01553 0.36 -0.4
53,274 + BACOVA_01553 0.41 -0.5
53,379 + BACOVA_01553 0.49 +1.5
53,381 + BACOVA_01553 0.49 -0.1
53,405 + BACOVA_01553 0.51 +1.3
53,405 + BACOVA_01553 0.51 -0.7
53,408 + BACOVA_01553 0.51 -0.2
53,413 + BACOVA_01553 0.51 +0.9
53,414 - BACOVA_01553 0.51 -1.0
53,419 - BACOVA_01553 0.52 +0.7
53,436 + BACOVA_01553 0.53 +0.4
53,439 + BACOVA_01553 0.53 -1.1
53,441 + BACOVA_01553 0.53 -0.4
53,442 - BACOVA_01553 0.53 -0.0
53,601 + BACOVA_01553 0.65 -0.3
53,602 - BACOVA_01553 0.65 -0.2
53,603 + BACOVA_01553 0.65 +1.7
53,611 + BACOVA_01553 0.66 -0.3
53,615 + BACOVA_01553 0.66 +1.9
53,616 - BACOVA_01553 0.66 +1.4
53,671 - BACOVA_01553 0.70 +3.0
53,671 - BACOVA_01553 0.70 -0.2
53,794 - BACOVA_01553 0.80 -0.4
53,794 - BACOVA_01553 0.80 -0.2
53,845 - BACOVA_01553 0.84 +0.2
53,846 + BACOVA_01553 0.84 +0.9
53,887 + BACOVA_01553 0.87 -0.9
53,887 + BACOVA_01553 0.87 -0.0
53,894 + BACOVA_01553 0.87 +0.2
53,895 - BACOVA_01553 0.87 +2.4
53,931 + +2.1
53,931 + -1.2
53,932 - -1.6
53,952 + +1.8
53,952 + +1.4
53,952 + -0.1
53,953 - +1.6
53,953 - -0.7
53,997 + +0.3
54,001 + -1.2
54,076 + +0.2
54,087 + +1.6
54,087 + -1.3
54,088 - -0.2
54,143 + -1.6
54,153 + -0.2
54,167 - +0.4
54,167 - +0.9
54,213 + -0.4
54,285 - +0.4
54,522 - +0.2
54,547 - -0.2
54,547 - -0.5
54,559 - -1.3
54,559 - -0.6
54,559 - +0.3
54,560 + +1.8
54,560 + -1.8
54,560 + +1.8
54,560 + -1.4
54,560 + +1.1
54,560 + -1.4
54,561 - +2.1
54,561 - -0.2
54,561 - +2.7
54,564 + -0.2
54,564 + -0.7
54,564 + +1.3
54,565 - BACOVA_01554 0.10 +0.5
54,565 - BACOVA_01554 0.10 +1.5
54,660 + BACOVA_01554 0.30 -1.2
54,725 + BACOVA_01554 0.43 +1.4
54,780 + BACOVA_01554 0.54 -2.0
54,781 - BACOVA_01554 0.55 -0.2
54,888 + BACOVA_01554 0.77 -1.1
54,888 + BACOVA_01554 0.77 -0.4
54,888 + BACOVA_01554 0.77 -0.6
54,889 - BACOVA_01554 0.77 -0.3
54,889 - BACOVA_01554 0.77 -0.7
54,889 - BACOVA_01554 0.77 -1.4
54,889 - BACOVA_01554 0.77 +0.4
54,889 - BACOVA_01554 0.77 -1.3
54,891 - BACOVA_01554 0.77 -0.7
54,893 - BACOVA_01554 0.78 +0.1
54,917 - BACOVA_01554 0.83 +0.2
54,922 - BACOVA_01554 0.84 +1.9
54,922 - BACOVA_01554 0.84 -1.0
55,004 - -0.9
55,010 + +0.8
55,011 - +0.4
55,011 - -0.2
55,016 - -0.9
55,019 + +0.4
55,022 + +2.4
55,023 - +1.4
55,048 - -0.1

Or see this region's nucleotide sequence