Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01224 and BACOVA_01225 are separated by 17 nucleotides BACOVA_01225 and BACOVA_01226 are separated by 19 nucleotides BACOVA_01226 and BACOVA_01227 are separated by 25 nucleotides
BACOVA_01224: BACOVA_01224 - leucine Rich Repeat protein, at 1,454 to 4,108
_01224
BACOVA_01225: BACOVA_01225 - hypothetical protein, at 4,126 to 5,688
_01225
BACOVA_01226: BACOVA_01226 - hypothetical protein, at 5,708 to 6,598
_01226
BACOVA_01227: BACOVA_01227 - SusD family protein, at 6,624 to 8,144
_01227
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.126 kb on - strand, within BACOVA_01224 at 3.126 kb on - strand, within BACOVA_01224 at 3.132 kb on + strand, within BACOVA_01224 at 3.137 kb on - strand, within BACOVA_01224 at 3.137 kb on - strand, within BACOVA_01224 at 3.222 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.235 kb on + strand, within BACOVA_01224 at 3.236 kb on - strand, within BACOVA_01224 at 3.277 kb on + strand, within BACOVA_01224 at 3.341 kb on - strand, within BACOVA_01224 at 3.350 kb on + strand, within BACOVA_01224 at 3.352 kb on + strand, within BACOVA_01224 at 3.376 kb on - strand, within BACOVA_01224 at 3.454 kb on + strand, within BACOVA_01224 at 3.457 kb on - strand, within BACOVA_01224 at 3.516 kb on - strand, within BACOVA_01224 at 3.521 kb on - strand, within BACOVA_01224 at 3.523 kb on + strand, within BACOVA_01224 at 3.523 kb on + strand, within BACOVA_01224 at 3.525 kb on + strand, within BACOVA_01224 at 3.525 kb on + strand, within BACOVA_01224 at 3.526 kb on - strand, within BACOVA_01224 at 3.526 kb on - strand, within BACOVA_01224 at 3.546 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.635 kb on + strand, within BACOVA_01224 at 3.645 kb on - strand, within BACOVA_01224 at 3.645 kb on - strand, within BACOVA_01224 at 3.670 kb on + strand, within BACOVA_01224 at 3.671 kb on - strand, within BACOVA_01224 at 3.725 kb on - strand, within BACOVA_01224 at 3.739 kb on + strand, within BACOVA_01224 at 3.742 kb on - strand, within BACOVA_01224 at 3.742 kb on - strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.743 kb on + strand, within BACOVA_01224 at 3.744 kb on - strand, within BACOVA_01224 at 3.769 kb on + strand, within BACOVA_01224 at 3.770 kb on - strand, within BACOVA_01224 at 3.770 kb on - strand, within BACOVA_01224 at 3.815 kb on - strand, within BACOVA_01224 at 3.839 kb on + strand, within BACOVA_01224 at 3.860 kb on - strand at 3.931 kb on + strand at 3.932 kb on - strand at 3.968 kb on - strand at 4.008 kb on - strand at 4.088 kb on - strand at 4.091 kb on + strand at 4.111 kb on + strand at 4.117 kb on - strand at 4.117 kb on - strand at 4.136 kb on + strand at 4.137 kb on - strand at 4.151 kb on - strand at 4.153 kb on + strand at 4.156 kb on + strand at 4.156 kb on + strand at 4.156 kb on + strand at 4.157 kb on - strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.163 kb on + strand at 4.164 kb on - strand at 4.191 kb on + strand at 4.192 kb on - strand at 4.224 kb on + strand at 4.229 kb on + strand at 4.229 kb on + strand at 4.230 kb on - strand at 4.274 kb on - strand at 4.314 kb on + strand, within BACOVA_01225 at 4.318 kb on - strand, within BACOVA_01225 at 4.318 kb on - strand, within BACOVA_01225 at 4.321 kb on - strand, within BACOVA_01225 at 4.332 kb on + strand, within BACOVA_01225 at 4.342 kb on - strand, within BACOVA_01225 at 4.371 kb on + strand, within BACOVA_01225 at 4.371 kb on + strand, within BACOVA_01225 at 4.398 kb on - strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.404 kb on + strand, within BACOVA_01225 at 4.407 kb on - strand, within BACOVA_01225 at 4.419 kb on + strand, within BACOVA_01225 at 4.463 kb on + strand, within BACOVA_01225 at 4.478 kb on - strand, within BACOVA_01225 at 4.499 kb on + strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.500 kb on - strand, within BACOVA_01225 at 4.515 kb on + strand, within BACOVA_01225 at 4.517 kb on + strand, within BACOVA_01225 at 4.545 kb on + strand, within BACOVA_01225 at 4.546 kb on - strand, within BACOVA_01225 at 4.569 kb on + strand, within BACOVA_01225 at 4.584 kb on - strand, within BACOVA_01225 at 4.587 kb on + strand, within BACOVA_01225 at 4.587 kb on + strand, within BACOVA_01225 at 4.588 kb on - strand, within BACOVA_01225 at 4.591 kb on - strand, within BACOVA_01225 at 4.600 kb on + strand, within BACOVA_01225 at 4.655 kb on + strand, within BACOVA_01225 at 4.657 kb on + strand, within BACOVA_01225 at 4.683 kb on - strand, within BACOVA_01225 at 4.776 kb on + strand, within BACOVA_01225 at 4.776 kb on + strand, within BACOVA_01225 at 4.785 kb on + strand, within BACOVA_01225 at 4.833 kb on + strand, within BACOVA_01225 at 4.833 kb on + strand, within BACOVA_01225 at 4.835 kb on + strand, within BACOVA_01225 at 4.836 kb on - strand, within BACOVA_01225 at 4.850 kb on + strand, within BACOVA_01225 at 4.851 kb on - strand, within BACOVA_01225 at 4.851 kb on - strand, within BACOVA_01225 at 4.854 kb on + strand, within BACOVA_01225 at 4.854 kb on + strand, within BACOVA_01225 at 4.855 kb on - strand, within BACOVA_01225 at 4.856 kb on + strand, within BACOVA_01225 at 4.856 kb on + strand, within BACOVA_01225 at 4.882 kb on + strand, within BACOVA_01225 at 4.904 kb on + strand, within BACOVA_01225 at 4.917 kb on + strand, within BACOVA_01225 at 4.917 kb on + strand, within BACOVA_01225 at 4.951 kb on - strand, within BACOVA_01225 at 4.951 kb on - strand, within BACOVA_01225 at 4.969 kb on - strand, within BACOVA_01225 at 4.971 kb on + strand, within BACOVA_01225 at 4.972 kb on - strand, within BACOVA_01225 at 4.980 kb on + strand, within BACOVA_01225 at 4.981 kb on - strand, within BACOVA_01225 at 5.131 kb on - strand, within BACOVA_01225 at 5.188 kb on + strand, within BACOVA_01225 at 5.188 kb on + strand, within BACOVA_01225 at 5.189 kb on - strand, within BACOVA_01225 at 5.238 kb on - strand, within BACOVA_01225 at 5.238 kb on - strand, within BACOVA_01225 at 5.250 kb on - strand, within BACOVA_01225 at 5.272 kb on + strand, within BACOVA_01225 at 5.306 kb on + strand, within BACOVA_01225 at 5.339 kb on - strand, within BACOVA_01225 at 5.412 kb on + strand, within BACOVA_01225 at 5.413 kb on - strand, within BACOVA_01225 at 5.415 kb on + strand, within BACOVA_01225 at 5.487 kb on - strand, within BACOVA_01225 at 5.521 kb on - strand, within BACOVA_01225 at 5.527 kb on - strand, within BACOVA_01225 at 5.569 kb on + strand at 5.620 kb on - strand at 5.674 kb on + strand at 5.674 kb on + strand at 5.692 kb on + strand at 5.704 kb on + strand at 5.704 kb on + strand at 5.709 kb on + strand at 5.709 kb on + strand at 5.775 kb on + strand at 5.776 kb on - strand at 5.776 kb on - strand at 5.779 kb on + strand at 5.779 kb on + strand at 5.805 kb on + strand, within BACOVA_01226 at 5.809 kb on + strand, within BACOVA_01226 at 5.809 kb on + strand, within BACOVA_01226 at 5.810 kb on - strand, within BACOVA_01226 at 5.810 kb on - strand, within BACOVA_01226 at 5.810 kb on - strand, within BACOVA_01226 at 5.815 kb on + strand, within BACOVA_01226 at 5.817 kb on + strand, within BACOVA_01226 at 5.819 kb on + strand, within BACOVA_01226 at 5.820 kb on - strand, within BACOVA_01226 at 5.840 kb on + strand, within BACOVA_01226 at 5.840 kb on + strand, within BACOVA_01226 at 5.841 kb on - strand, within BACOVA_01226 at 5.845 kb on + strand, within BACOVA_01226 at 5.846 kb on - strand, within BACOVA_01226 at 5.846 kb on - strand, within BACOVA_01226 at 5.847 kb on + strand, within BACOVA_01226 at 5.851 kb on - strand, within BACOVA_01226 at 5.875 kb on + strand, within BACOVA_01226 at 5.875 kb on + strand, within BACOVA_01226 at 5.876 kb on - strand, within BACOVA_01226 at 5.876 kb on - strand, within BACOVA_01226 at 5.926 kb on + strand, within BACOVA_01226 at 5.927 kb on - strand, within BACOVA_01226 at 5.927 kb on - strand, within BACOVA_01226 at 5.930 kb on + strand, within BACOVA_01226 at 5.932 kb on + strand, within BACOVA_01226 at 5.987 kb on - strand, within BACOVA_01226 at 6.023 kb on + strand, within BACOVA_01226 at 6.023 kb on + strand, within BACOVA_01226 at 6.024 kb on - strand, within BACOVA_01226 at 6.035 kb on - strand, within BACOVA_01226 at 6.093 kb on + strand, within BACOVA_01226 at 6.126 kb on + strand, within BACOVA_01226 at 6.127 kb on - strand, within BACOVA_01226 at 6.127 kb on - strand, within BACOVA_01226 at 6.140 kb on - strand, within BACOVA_01226 at 6.142 kb on + strand, within BACOVA_01226 at 6.193 kb on - strand, within BACOVA_01226 at 6.203 kb on + strand, within BACOVA_01226 at 6.270 kb on + strand, within BACOVA_01226 at 6.342 kb on + strand, within BACOVA_01226 at 6.342 kb on + strand, within BACOVA_01226 at 6.364 kb on + strand, within BACOVA_01226 at 6.364 kb on + strand, within BACOVA_01226 at 6.406 kb on - strand, within BACOVA_01226 at 6.415 kb on + strand, within BACOVA_01226 at 6.415 kb on + strand, within BACOVA_01226 at 6.415 kb on + strand, within BACOVA_01226 at 6.426 kb on - strand, within BACOVA_01226 at 6.469 kb on - strand, within BACOVA_01226 at 6.472 kb on + strand, within BACOVA_01226 at 6.472 kb on + strand, within BACOVA_01226 at 6.476 kb on + strand, within BACOVA_01226 at 6.535 kb on + strand at 6.535 kb on + strand at 6.536 kb on - strand at 6.573 kb on - strand at 6.573 kb on - strand at 6.609 kb on + strand at 6.609 kb on + strand at 6.620 kb on + strand at 6.620 kb on + strand at 6.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 3,126 - BACOVA_01224 0.63 +1.2 3,126 - BACOVA_01224 0.63 +0.6 3,132 + BACOVA_01224 0.63 +0.1 3,137 - BACOVA_01224 0.63 +0.8 3,137 - BACOVA_01224 0.63 -1.4 3,222 + BACOVA_01224 0.67 -0.2 3,235 + BACOVA_01224 0.67 -0.9 3,235 + BACOVA_01224 0.67 -1.6 3,235 + BACOVA_01224 0.67 -0.2 3,235 + BACOVA_01224 0.67 -1.1 3,236 - BACOVA_01224 0.67 +0.4 3,277 + BACOVA_01224 0.69 +1.4 3,341 - BACOVA_01224 0.71 +1.9 3,350 + BACOVA_01224 0.71 -3.0 3,352 + BACOVA_01224 0.71 -2.1 3,376 - BACOVA_01224 0.72 -1.8 3,454 + BACOVA_01224 0.75 -1.2 3,457 - BACOVA_01224 0.75 -0.6 3,516 - BACOVA_01224 0.78 -0.4 3,521 - BACOVA_01224 0.78 -1.0 3,523 + BACOVA_01224 0.78 -0.1 3,523 + BACOVA_01224 0.78 -0.7 3,525 + BACOVA_01224 0.78 +0.1 3,525 + BACOVA_01224 0.78 -0.6 3,526 - BACOVA_01224 0.78 -0.9 3,526 - BACOVA_01224 0.78 -2.3 3,546 + BACOVA_01224 0.79 -0.3 3,635 + BACOVA_01224 0.82 +1.6 3,635 + BACOVA_01224 0.82 -0.4 3,635 + BACOVA_01224 0.82 -1.8 3,645 - BACOVA_01224 0.83 -0.7 3,645 - BACOVA_01224 0.83 -1.0 3,670 + BACOVA_01224 0.83 -1.3 3,671 - BACOVA_01224 0.84 +0.6 3,725 - BACOVA_01224 0.86 -1.9 3,739 + BACOVA_01224 0.86 -2.1 3,742 - BACOVA_01224 0.86 -0.2 3,742 - BACOVA_01224 0.86 -0.3 3,743 + BACOVA_01224 0.86 -0.1 3,743 + BACOVA_01224 0.86 -1.8 3,743 + BACOVA_01224 0.86 +0.5 3,744 - BACOVA_01224 0.86 -0.2 3,769 + BACOVA_01224 0.87 +0.8 3,770 - BACOVA_01224 0.87 +0.0 3,770 - BACOVA_01224 0.87 -1.2 3,815 - BACOVA_01224 0.89 +1.9 3,839 + BACOVA_01224 0.90 -0.5 3,860 - -0.8 3,931 + -0.8 3,932 - -2.3 3,968 - +1.4 4,008 - -0.4 4,088 - +1.6 4,091 + +0.1 4,111 + +1.2 4,117 - -1.0 4,117 - -0.6 4,136 + +0.9 4,137 - +0.8 4,151 - -1.3 4,153 + -0.2 4,156 + -1.6 4,156 + +0.3 4,156 + -0.4 4,157 - -0.8 4,163 + -0.2 4,163 + -1.4 4,163 + +0.5 4,163 + +0.5 4,163 + -1.9 4,164 - -0.6 4,191 + -0.3 4,192 - -0.9 4,224 + +0.3 4,229 + -0.4 4,229 + +0.1 4,230 - -1.1 4,274 - -0.6 4,314 + BACOVA_01225 0.12 +3.2 4,318 - BACOVA_01225 0.12 +0.8 4,318 - BACOVA_01225 0.12 +0.4 4,321 - BACOVA_01225 0.12 +0.1 4,332 + BACOVA_01225 0.13 +0.3 4,342 - BACOVA_01225 0.14 +0.4 4,371 + BACOVA_01225 0.16 -1.0 4,371 + BACOVA_01225 0.16 +0.8 4,398 - BACOVA_01225 0.17 +0.1 4,404 + BACOVA_01225 0.18 -1.3 4,404 + BACOVA_01225 0.18 +0.3 4,404 + BACOVA_01225 0.18 +0.3 4,407 - BACOVA_01225 0.18 -0.2 4,419 + BACOVA_01225 0.19 +1.2 4,463 + BACOVA_01225 0.22 -0.9 4,478 - BACOVA_01225 0.23 -1.7 4,499 + BACOVA_01225 0.24 -0.1 4,500 - BACOVA_01225 0.24 -0.4 4,500 - BACOVA_01225 0.24 -0.1 4,500 - BACOVA_01225 0.24 -1.8 4,515 + BACOVA_01225 0.25 -1.1 4,517 + BACOVA_01225 0.25 +1.6 4,545 + BACOVA_01225 0.27 -0.2 4,546 - BACOVA_01225 0.27 +0.4 4,569 + BACOVA_01225 0.28 +1.1 4,584 - BACOVA_01225 0.29 +0.4 4,587 + BACOVA_01225 0.29 +1.1 4,587 + BACOVA_01225 0.29 -0.3 4,588 - BACOVA_01225 0.30 -1.6 4,591 - BACOVA_01225 0.30 -2.5 4,600 + BACOVA_01225 0.30 +0.6 4,655 + BACOVA_01225 0.34 +0.1 4,657 + BACOVA_01225 0.34 -0.2 4,683 - BACOVA_01225 0.36 +0.8 4,776 + BACOVA_01225 0.42 -0.3 4,776 + BACOVA_01225 0.42 -0.9 4,785 + BACOVA_01225 0.42 +1.8 4,833 + BACOVA_01225 0.45 +0.1 4,833 + BACOVA_01225 0.45 -0.4 4,835 + BACOVA_01225 0.45 -0.4 4,836 - BACOVA_01225 0.45 -0.2 4,850 + BACOVA_01225 0.46 +0.2 4,851 - BACOVA_01225 0.46 +0.4 4,851 - BACOVA_01225 0.46 -0.2 4,854 + BACOVA_01225 0.47 +1.9 4,854 + BACOVA_01225 0.47 -0.3 4,855 - BACOVA_01225 0.47 +1.4 4,856 + BACOVA_01225 0.47 +0.1 4,856 + BACOVA_01225 0.47 +1.7 4,882 + BACOVA_01225 0.48 -0.4 4,904 + BACOVA_01225 0.50 -1.5 4,917 + BACOVA_01225 0.51 +2.4 4,917 + BACOVA_01225 0.51 -0.5 4,951 - BACOVA_01225 0.53 -0.2 4,951 - BACOVA_01225 0.53 -0.5 4,969 - BACOVA_01225 0.54 +0.8 4,971 + BACOVA_01225 0.54 +0.8 4,972 - BACOVA_01225 0.54 +0.4 4,980 + BACOVA_01225 0.55 +2.0 4,981 - BACOVA_01225 0.55 +0.2 5,131 - BACOVA_01225 0.64 -1.9 5,188 + BACOVA_01225 0.68 +0.9 5,188 + BACOVA_01225 0.68 -0.2 5,189 - BACOVA_01225 0.68 -1.2 5,238 - BACOVA_01225 0.71 -1.3 5,238 - BACOVA_01225 0.71 -0.7 5,250 - BACOVA_01225 0.72 -0.9 5,272 + BACOVA_01225 0.73 +0.4 5,306 + BACOVA_01225 0.75 +1.4 5,339 - BACOVA_01225 0.78 +0.4 5,412 + BACOVA_01225 0.82 -1.0 5,413 - BACOVA_01225 0.82 +1.1 5,415 + BACOVA_01225 0.82 +0.7 5,487 - BACOVA_01225 0.87 +1.7 5,521 - BACOVA_01225 0.89 -0.6 5,527 - BACOVA_01225 0.90 -0.2 5,569 + +2.4 5,620 - -1.1 5,674 + -0.6 5,674 + -0.9 5,692 + -0.2 5,704 + +0.0 5,704 + -1.9 5,709 + -1.2 5,709 + +0.8 5,775 + -0.4 5,776 - +1.2 5,776 - +0.4 5,779 + +0.4 5,779 + +1.7 5,805 + BACOVA_01226 0.11 -0.2 5,809 + BACOVA_01226 0.11 -1.8 5,809 + BACOVA_01226 0.11 +1.8 5,810 - BACOVA_01226 0.11 +0.4 5,810 - BACOVA_01226 0.11 +1.9 5,810 - BACOVA_01226 0.11 +1.4 5,815 + BACOVA_01226 0.12 -0.5 5,817 + BACOVA_01226 0.12 -1.9 5,819 + BACOVA_01226 0.12 +0.9 5,820 - BACOVA_01226 0.13 +0.4 5,840 + BACOVA_01226 0.15 -0.5 5,840 + BACOVA_01226 0.15 -1.2 5,841 - BACOVA_01226 0.15 +1.9 5,845 + BACOVA_01226 0.15 +0.4 5,846 - BACOVA_01226 0.15 -0.3 5,846 - BACOVA_01226 0.15 -0.6 5,847 + BACOVA_01226 0.16 +0.4 5,851 - BACOVA_01226 0.16 +2.0 5,875 + BACOVA_01226 0.19 -0.1 5,875 + BACOVA_01226 0.19 +3.1 5,876 - BACOVA_01226 0.19 +1.1 5,876 - BACOVA_01226 0.19 -0.2 5,926 + BACOVA_01226 0.24 +0.6 5,927 - BACOVA_01226 0.25 +0.2 5,927 - BACOVA_01226 0.25 +0.4 5,930 + BACOVA_01226 0.25 +0.4 5,932 + BACOVA_01226 0.25 -0.9 5,987 - BACOVA_01226 0.31 +0.4 6,023 + BACOVA_01226 0.35 -0.1 6,023 + BACOVA_01226 0.35 -0.6 6,024 - BACOVA_01226 0.35 +0.4 6,035 - BACOVA_01226 0.37 +0.3 6,093 + BACOVA_01226 0.43 +0.8 6,126 + BACOVA_01226 0.47 -2.6 6,127 - BACOVA_01226 0.47 -1.8 6,127 - BACOVA_01226 0.47 +1.4 6,140 - BACOVA_01226 0.48 +0.6 6,142 + BACOVA_01226 0.49 +1.8 6,193 - BACOVA_01226 0.54 +1.7 6,203 + BACOVA_01226 0.56 -0.5 6,270 + BACOVA_01226 0.63 +0.4 6,342 + BACOVA_01226 0.71 +0.4 6,342 + BACOVA_01226 0.71 +0.9 6,364 + BACOVA_01226 0.74 -1.1 6,364 + BACOVA_01226 0.74 -0.4 6,406 - BACOVA_01226 0.78 -0.7 6,415 + BACOVA_01226 0.79 +0.5 6,415 + BACOVA_01226 0.79 +0.1 6,415 + BACOVA_01226 0.79 -2.1 6,426 - BACOVA_01226 0.81 +0.6 6,469 - BACOVA_01226 0.85 +0.7 6,472 + BACOVA_01226 0.86 +0.1 6,472 + BACOVA_01226 0.86 +0.4 6,476 + BACOVA_01226 0.86 -0.8 6,535 + -0.4 6,535 + -0.2 6,536 - -1.4 6,573 - +0.5 6,573 - +0.4 6,609 + +1.4 6,609 + -0.1 6,620 + -0.9 6,620 + -0.8 6,626 - -0.2
Or see this region's nucleotide sequence