Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01065

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01064 and BACOVA_01065 are separated by 54 nucleotidesBACOVA_01065 and BACOVA_01066 are separated by 96 nucleotidesBACOVA_01066 and BACOVA_01067 overlap by 8 nucleotides BACOVA_01064: BACOVA_01064 - hypothetical protein, at 275,311 to 277,524 _01064 BACOVA_01065: BACOVA_01065 - hypothetical protein, at 277,579 to 277,704 _01065 BACOVA_01066: BACOVA_01066 - hypothetical protein, at 277,801 to 278,376 _01066 BACOVA_01067: BACOVA_01067 - hypothetical protein, at 278,369 to 278,848 _01067 Position (kb) 277 278Strain fitness (log2 ratio) -2 -1 0 1 2 3at 276.591 kb on + strand, within BACOVA_01064at 276.594 kb on - strand, within BACOVA_01064at 276.594 kb on - strand, within BACOVA_01064at 276.598 kb on - strand, within BACOVA_01064at 276.611 kb on + strand, within BACOVA_01064at 276.611 kb on + strand, within BACOVA_01064at 276.612 kb on - strand, within BACOVA_01064at 276.612 kb on - strand, within BACOVA_01064at 276.660 kb on + strand, within BACOVA_01064at 276.687 kb on - strand, within BACOVA_01064at 276.690 kb on + strand, within BACOVA_01064at 276.691 kb on - strand, within BACOVA_01064at 276.716 kb on - strand, within BACOVA_01064at 276.727 kb on - strand, within BACOVA_01064at 276.754 kb on - strand, within BACOVA_01064at 276.763 kb on + strand, within BACOVA_01064at 276.764 kb on - strand, within BACOVA_01064at 276.806 kb on + strand, within BACOVA_01064at 276.806 kb on + strand, within BACOVA_01064at 276.806 kb on + strand, within BACOVA_01064at 276.806 kb on + strand, within BACOVA_01064at 276.806 kb on + strand, within BACOVA_01064at 276.807 kb on - strand, within BACOVA_01064at 276.807 kb on - strand, within BACOVA_01064at 276.807 kb on - strand, within BACOVA_01064at 276.810 kb on + strand, within BACOVA_01064at 276.810 kb on + strand, within BACOVA_01064at 276.818 kb on - strand, within BACOVA_01064at 276.900 kb on + strand, within BACOVA_01064at 276.927 kb on + strand, within BACOVA_01064at 276.927 kb on + strand, within BACOVA_01064at 276.935 kb on + strand, within BACOVA_01064at 277.124 kb on + strand, within BACOVA_01064at 277.124 kb on + strand, within BACOVA_01064at 277.124 kb on + strand, within BACOVA_01064at 277.124 kb on + strand, within BACOVA_01064at 277.125 kb on - strand, within BACOVA_01064at 277.125 kb on - strand, within BACOVA_01064at 277.128 kb on + strand, within BACOVA_01064at 277.202 kb on - strand, within BACOVA_01064at 277.224 kb on + strand, within BACOVA_01064at 277.224 kb on + strand, within BACOVA_01064at 277.224 kb on + strand, within BACOVA_01064at 277.224 kb on + strand, within BACOVA_01064at 277.228 kb on + strand, within BACOVA_01064at 277.228 kb on + strand, within BACOVA_01064at 277.229 kb on - strand, within BACOVA_01064at 277.229 kb on - strand, within BACOVA_01064at 277.231 kb on + strand, within BACOVA_01064at 277.231 kb on + strand, within BACOVA_01064at 277.232 kb on - strand, within BACOVA_01064at 277.236 kb on + strand, within BACOVA_01064at 277.266 kb on + strand, within BACOVA_01064at 277.297 kb on - strand, within BACOVA_01064at 277.384 kb on - strandat 277.386 kb on - strandat 277.412 kb on + strandat 277.436 kb on - strandat 277.518 kb on - strandat 277.561 kb on + strandat 277.617 kb on - strand, within BACOVA_01065at 277.649 kb on - strand, within BACOVA_01065at 277.649 kb on - strand, within BACOVA_01065at 277.657 kb on - strand, within BACOVA_01065at 277.659 kb on + strand, within BACOVA_01065at 277.659 kb on + strand, within BACOVA_01065at 277.660 kb on - strand, within BACOVA_01065at 277.660 kb on - strand, within BACOVA_01065at 277.660 kb on - strand, within BACOVA_01065at 277.677 kb on + strand, within BACOVA_01065at 277.677 kb on + strand, within BACOVA_01065at 277.715 kb on + strandat 277.716 kb on - strandat 277.716 kb on - strandat 277.716 kb on - strandat 277.717 kb on + strandat 277.718 kb on - strandat 277.718 kb on - strandat 277.721 kb on + strandat 277.722 kb on - strandat 277.730 kb on - strandat 277.792 kb on + strandat 277.806 kb on - strandat 277.809 kb on + strandat 277.821 kb on + strandat 277.823 kb on + strandat 277.823 kb on + strandat 277.824 kb on - strandat 277.824 kb on - strandat 277.824 kb on - strandat 277.922 kb on - strand, within BACOVA_01066at 278.008 kb on + strand, within BACOVA_01066at 278.022 kb on + strand, within BACOVA_01066at 278.022 kb on + strand, within BACOVA_01066at 278.233 kb on + strand, within BACOVA_01066at 278.243 kb on + strand, within BACOVA_01066at 278.244 kb on - strand, within BACOVA_01066at 278.257 kb on + strand, within BACOVA_01066at 278.263 kb on - strand, within BACOVA_01066at 278.329 kb on + strandat 278.633 kb on - strand, within BACOVA_01067at 278.671 kb on + strand, within BACOVA_01067at 278.672 kb on - strand, within BACOVA_01067at 278.672 kb on - strand, within BACOVA_01067

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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276,591 + BACOVA_01064 0.58 +0.1
276,594 - BACOVA_01064 0.58 -0.1
276,594 - BACOVA_01064 0.58 +0.6
276,598 - BACOVA_01064 0.58 -0.7
276,611 + BACOVA_01064 0.59 +0.3
276,611 + BACOVA_01064 0.59 -1.0
276,612 - BACOVA_01064 0.59 -1.2
276,612 - BACOVA_01064 0.59 +0.3
276,660 + BACOVA_01064 0.61 +1.1
276,687 - BACOVA_01064 0.62 +1.2
276,690 + BACOVA_01064 0.62 +2.0
276,691 - BACOVA_01064 0.62 -0.8
276,716 - BACOVA_01064 0.63 -1.2
276,727 - BACOVA_01064 0.64 +0.3
276,754 - BACOVA_01064 0.65 +0.3
276,763 + BACOVA_01064 0.66 -0.6
276,764 - BACOVA_01064 0.66 +0.7
276,806 + BACOVA_01064 0.68 -1.0
276,806 + BACOVA_01064 0.68 +0.0
276,806 + BACOVA_01064 0.68 -0.9
276,806 + BACOVA_01064 0.68 -0.9
276,806 + BACOVA_01064 0.68 +1.5
276,807 - BACOVA_01064 0.68 -0.9
276,807 - BACOVA_01064 0.68 +1.9
276,807 - BACOVA_01064 0.68 -0.7
276,810 + BACOVA_01064 0.68 +0.1
276,810 + BACOVA_01064 0.68 -0.2
276,818 - BACOVA_01064 0.68 -2.1
276,900 + BACOVA_01064 0.72 -0.7
276,927 + BACOVA_01064 0.73 -1.1
276,927 + BACOVA_01064 0.73 -0.1
276,935 + BACOVA_01064 0.73 +0.1
277,124 + BACOVA_01064 0.82 +0.5
277,124 + BACOVA_01064 0.82 -1.4
277,124 + BACOVA_01064 0.82 -1.1
277,124 + BACOVA_01064 0.82 -1.9
277,125 - BACOVA_01064 0.82 -1.6
277,125 - BACOVA_01064 0.82 -0.9
277,128 + BACOVA_01064 0.82 +0.5
277,202 - BACOVA_01064 0.85 -1.2
277,224 + BACOVA_01064 0.86 -1.1
277,224 + BACOVA_01064 0.86 +0.5
277,224 + BACOVA_01064 0.86 +0.1
277,224 + BACOVA_01064 0.86 +0.4
277,228 + BACOVA_01064 0.87 +0.0
277,228 + BACOVA_01064 0.87 +0.2
277,229 - BACOVA_01064 0.87 +2.6
277,229 - BACOVA_01064 0.87 +1.7
277,231 + BACOVA_01064 0.87 +0.5
277,231 + BACOVA_01064 0.87 +0.5
277,232 - BACOVA_01064 0.87 -1.3
277,236 + BACOVA_01064 0.87 -0.3
277,266 + BACOVA_01064 0.88 -0.2
277,297 - BACOVA_01064 0.90 -0.4
277,384 - +0.5
277,386 - +1.5
277,412 + +3.3
277,436 - -1.2
277,518 - -0.7
277,561 + -0.2
277,617 - BACOVA_01065 0.30 +0.3
277,649 - BACOVA_01065 0.56 -0.0
277,649 - BACOVA_01065 0.56 +0.1
277,657 - BACOVA_01065 0.62 -2.5
277,659 + BACOVA_01065 0.63 -1.4
277,659 + BACOVA_01065 0.63 -1.2
277,660 - BACOVA_01065 0.64 -0.1
277,660 - BACOVA_01065 0.64 +0.4
277,660 - BACOVA_01065 0.64 -0.5
277,677 + BACOVA_01065 0.78 +1.1
277,677 + BACOVA_01065 0.78 +1.5
277,715 + +2.0
277,716 - +0.2
277,716 - +1.5
277,716 - +0.7
277,717 + +0.2
277,718 - -1.8
277,718 - +0.9
277,721 + +3.3
277,722 - +0.9
277,730 - -0.8
277,792 + -1.1
277,806 - +1.5
277,809 + -0.2
277,821 + +0.5
277,823 + -0.7
277,823 + -1.6
277,824 - -0.0
277,824 - -1.4
277,824 - +0.1
277,922 - BACOVA_01066 0.21 +2.1
278,008 + BACOVA_01066 0.36 -0.1
278,022 + BACOVA_01066 0.38 -0.2
278,022 + BACOVA_01066 0.38 -0.4
278,233 + BACOVA_01066 0.75 -0.8
278,243 + BACOVA_01066 0.77 -0.4
278,244 - BACOVA_01066 0.77 -0.2
278,257 + BACOVA_01066 0.79 -0.7
278,263 - BACOVA_01066 0.80 +0.6
278,329 + +0.5
278,633 - BACOVA_01067 0.55 -0.2
278,671 + BACOVA_01067 0.63 -0.0
278,672 - BACOVA_01067 0.63 +0.3
278,672 - BACOVA_01067 0.63 +0.3

Or see this region's nucleotide sequence