Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00540

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00539 and BACOVA_00540 are separated by 13 nucleotidesBACOVA_00540 and BACOVA_00541 are separated by 126 nucleotidesBACOVA_00541 and BACOVA_00542 are separated by 143 nucleotidesBACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides BACOVA_00539: BACOVA_00539 - RHS repeat-associated core domain protein, at 34,609 to 37,680 _00539 BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675 _00540 BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903 _00541 BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547 _00542 BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080 _00543 Position (kb) 37 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.781 kb on + strand, within BACOVA_00539at 36.781 kb on + strand, within BACOVA_00539at 36.781 kb on + strand, within BACOVA_00539at 36.782 kb on - strand, within BACOVA_00539at 36.809 kb on + strand, within BACOVA_00539at 36.833 kb on - strand, within BACOVA_00539at 36.866 kb on + strand, within BACOVA_00539at 36.873 kb on - strand, within BACOVA_00539at 36.919 kb on - strand, within BACOVA_00539at 36.938 kb on + strand, within BACOVA_00539at 36.943 kb on + strand, within BACOVA_00539at 36.943 kb on + strand, within BACOVA_00539at 36.972 kb on - strand, within BACOVA_00539at 36.996 kb on + strand, within BACOVA_00539at 37.001 kb on - strand, within BACOVA_00539at 37.043 kb on + strand, within BACOVA_00539at 37.044 kb on - strand, within BACOVA_00539at 37.173 kb on + strand, within BACOVA_00539at 37.184 kb on + strand, within BACOVA_00539at 37.229 kb on + strand, within BACOVA_00539at 37.266 kb on - strand, within BACOVA_00539at 37.269 kb on + strand, within BACOVA_00539at 37.347 kb on - strand, within BACOVA_00539at 37.347 kb on - strand, within BACOVA_00539at 37.356 kb on + strand, within BACOVA_00539at 37.357 kb on - strand, within BACOVA_00539at 37.403 kb on + strandat 37.403 kb on + strandat 37.409 kb on - strandat 37.409 kb on - strandat 37.409 kb on - strandat 37.428 kb on + strandat 37.431 kb on + strandat 37.493 kb on + strandat 37.502 kb on - strandat 37.546 kb on + strandat 37.547 kb on - strandat 37.551 kb on - strandat 37.556 kb on + strandat 37.556 kb on + strandat 37.557 kb on - strandat 37.560 kb on + strandat 37.561 kb on - strandat 37.561 kb on - strandat 37.654 kb on + strandat 37.655 kb on - strandat 37.656 kb on + strandat 37.661 kb on - strandat 37.667 kb on - strandat 37.733 kb on + strandat 37.746 kb on + strandat 37.776 kb on - strandat 37.794 kb on + strandat 37.795 kb on - strandat 37.848 kb on + strandat 37.849 kb on - strandat 37.852 kb on + strandat 37.852 kb on + strandat 37.852 kb on + strandat 37.853 kb on - strandat 37.854 kb on + strandat 37.854 kb on + strandat 37.855 kb on - strandat 37.889 kb on + strandat 37.889 kb on + strandat 37.954 kb on + strandat 37.955 kb on - strandat 37.978 kb on + strandat 38.017 kb on - strand, within BACOVA_00540at 38.058 kb on + strand, within BACOVA_00540at 38.058 kb on + strand, within BACOVA_00540at 38.058 kb on + strand, within BACOVA_00540at 38.059 kb on - strand, within BACOVA_00540at 38.083 kb on - strand, within BACOVA_00540at 38.097 kb on + strand, within BACOVA_00540at 38.123 kb on + strand, within BACOVA_00540at 38.142 kb on + strand, within BACOVA_00540at 38.174 kb on + strand, within BACOVA_00540at 38.184 kb on + strand, within BACOVA_00540at 38.185 kb on - strand, within BACOVA_00540at 38.185 kb on - strand, within BACOVA_00540at 38.190 kb on + strand, within BACOVA_00540at 38.190 kb on - strand, within BACOVA_00540at 38.191 kb on - strand, within BACOVA_00540at 38.239 kb on - strand, within BACOVA_00540at 38.267 kb on + strand, within BACOVA_00540at 38.292 kb on + strand, within BACOVA_00540at 38.293 kb on - strand, within BACOVA_00540at 38.294 kb on + strand, within BACOVA_00540at 38.294 kb on + strand, within BACOVA_00540at 38.294 kb on + strand, within BACOVA_00540at 38.296 kb on + strand, within BACOVA_00540at 38.296 kb on + strand, within BACOVA_00540at 38.297 kb on - strand, within BACOVA_00540at 38.339 kb on + strand, within BACOVA_00540at 38.392 kb on - strand, within BACOVA_00540at 38.410 kb on + strand, within BACOVA_00540at 38.411 kb on - strand, within BACOVA_00540at 38.467 kb on - strand, within BACOVA_00540at 38.487 kb on + strand, within BACOVA_00540at 38.488 kb on - strand, within BACOVA_00540at 38.488 kb on - strand, within BACOVA_00540at 38.505 kb on + strand, within BACOVA_00540at 38.512 kb on + strand, within BACOVA_00540at 38.513 kb on - strand, within BACOVA_00540at 38.531 kb on - strand, within BACOVA_00540at 38.533 kb on - strand, within BACOVA_00540at 38.583 kb on + strand, within BACOVA_00540at 38.593 kb on - strand, within BACOVA_00540at 38.593 kb on - strand, within BACOVA_00540at 38.611 kb on + strand, within BACOVA_00540at 38.625 kb on + strand, within BACOVA_00540at 38.749 kb on + strand, within BACOVA_00540at 38.830 kb on + strand, within BACOVA_00540at 38.867 kb on + strand, within BACOVA_00540at 38.867 kb on + strand, within BACOVA_00540at 38.868 kb on - strand, within BACOVA_00540at 38.871 kb on - strand, within BACOVA_00540at 38.980 kb on + strand, within BACOVA_00540at 39.007 kb on - strand, within BACOVA_00540at 39.017 kb on + strand, within BACOVA_00540at 39.043 kb on + strand, within BACOVA_00540at 39.044 kb on - strand, within BACOVA_00540at 39.053 kb on + strand, within BACOVA_00540at 39.072 kb on - strand, within BACOVA_00540at 39.084 kb on - strand, within BACOVA_00540at 39.139 kb on + strand, within BACOVA_00540at 39.144 kb on + strand, within BACOVA_00540at 39.172 kb on + strand, within BACOVA_00540at 39.172 kb on + strand, within BACOVA_00540at 39.173 kb on - strand, within BACOVA_00540at 39.173 kb on - strand, within BACOVA_00540at 39.231 kb on + strand, within BACOVA_00540at 39.261 kb on + strand, within BACOVA_00540at 39.262 kb on - strand, within BACOVA_00540at 39.262 kb on - strand, within BACOVA_00540at 39.289 kb on - strand, within BACOVA_00540at 39.321 kb on + strand, within BACOVA_00540at 39.349 kb on - strand, within BACOVA_00540at 39.408 kb on - strand, within BACOVA_00540at 39.499 kb on + strand, within BACOVA_00540at 39.502 kb on - strand, within BACOVA_00540at 39.536 kb on - strand, within BACOVA_00540at 39.536 kb on - strand, within BACOVA_00540at 39.577 kb on - strand, within BACOVA_00540at 39.602 kb on - strand, within BACOVA_00540at 39.631 kb on - strand, within BACOVA_00540at 39.665 kb on + strand, within BACOVA_00540at 39.688 kb on + strand, within BACOVA_00540at 39.689 kb on - strand, within BACOVA_00540at 39.710 kb on + strand, within BACOVA_00540at 39.712 kb on + strand, within BACOVA_00540at 39.793 kb on + strand, within BACOVA_00540at 39.794 kb on - strand, within BACOVA_00540at 39.813 kb on + strand, within BACOVA_00540at 39.855 kb on + strand, within BACOVA_00540at 39.856 kb on - strand, within BACOVA_00540at 39.913 kb on + strand, within BACOVA_00540at 39.979 kb on + strand, within BACOVA_00540at 39.979 kb on + strand, within BACOVA_00540at 39.988 kb on + strand, within BACOVA_00540at 40.242 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.276 kb on + strand, within BACOVA_00540at 40.300 kb on - strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.341 kb on + strand, within BACOVA_00540at 40.373 kb on + strand, within BACOVA_00540at 40.452 kb on + strandat 40.452 kb on + strandat 40.497 kb on + strandat 40.497 kb on + strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.500 kb on - strandat 40.501 kb on + strandat 40.502 kb on - strandat 40.554 kb on + strandat 40.576 kb on + strandat 40.576 kb on + strandat 40.617 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.622 kb on - strandat 40.624 kb on + strandat 40.624 kb on + strandat 40.634 kb on + strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.664 kb on + strandat 40.678 kb on - strandat 40.777 kb on + strandat 40.778 kb on - strandat 40.960 kb on + strandat 40.964 kb on + strandat 40.970 kb on + strandat 41.158 kb on + strand, within BACOVA_00542at 41.298 kb on + strand, within BACOVA_00542at 41.387 kb on + strand, within BACOVA_00542at 41.390 kb on + strand, within BACOVA_00542at 41.514 kb on + strandat 41.514 kb on + strandat 41.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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36,781 + BACOVA_00539 0.71 +1.6
36,781 + BACOVA_00539 0.71 -0.4
36,781 + BACOVA_00539 0.71 -0.9
36,782 - BACOVA_00539 0.71 +0.1
36,809 + BACOVA_00539 0.72 +1.4
36,833 - BACOVA_00539 0.72 -1.4
36,866 + BACOVA_00539 0.73 -0.2
36,873 - BACOVA_00539 0.74 -2.0
36,919 - BACOVA_00539 0.75 +1.4
36,938 + BACOVA_00539 0.76 +1.4
36,943 + BACOVA_00539 0.76 -1.5
36,943 + BACOVA_00539 0.76 +3.4
36,972 - BACOVA_00539 0.77 +0.1
36,996 + BACOVA_00539 0.78 +0.1
37,001 - BACOVA_00539 0.78 +0.1
37,043 + BACOVA_00539 0.79 +3.4
37,044 - BACOVA_00539 0.79 +1.9
37,173 + BACOVA_00539 0.83 -0.2
37,184 + BACOVA_00539 0.84 +0.6
37,229 + BACOVA_00539 0.85 -0.9
37,266 - BACOVA_00539 0.86 +1.3
37,269 + BACOVA_00539 0.87 -0.6
37,347 - BACOVA_00539 0.89 -0.4
37,347 - BACOVA_00539 0.89 +2.3
37,356 + BACOVA_00539 0.89 -0.6
37,357 - BACOVA_00539 0.89 +1.8
37,403 + -0.9
37,403 + +0.2
37,409 - -1.5
37,409 - +2.4
37,409 - +1.8
37,428 + -0.9
37,431 + +0.1
37,493 + +2.8
37,502 - -1.5
37,546 + -0.7
37,547 - +1.7
37,551 - +0.4
37,556 + -2.4
37,556 + -0.7
37,557 - +2.2
37,560 + -1.8
37,561 - +0.8
37,561 - -0.2
37,654 + +2.7
37,655 - +0.1
37,656 + -0.5
37,661 - -0.3
37,667 - +1.4
37,733 + +1.0
37,746 + -0.6
37,776 - -0.2
37,794 + +1.9
37,795 - -1.2
37,848 + -0.2
37,849 - -0.6
37,852 + -0.2
37,852 + +0.4
37,852 + +0.4
37,853 - -1.9
37,854 + -0.2
37,854 + +0.1
37,855 - -1.6
37,889 + -0.2
37,889 + -1.2
37,954 + -0.8
37,955 - +0.8
37,978 + -1.2
38,017 - BACOVA_00540 0.11 +0.7
38,058 + BACOVA_00540 0.12 -0.6
38,058 + BACOVA_00540 0.12 -1.1
38,058 + BACOVA_00540 0.12 +1.0
38,059 - BACOVA_00540 0.12 +0.4
38,083 - BACOVA_00540 0.13 -0.2
38,097 + BACOVA_00540 0.14 +1.0
38,123 + BACOVA_00540 0.14 -0.6
38,142 + BACOVA_00540 0.15 -1.0
38,174 + BACOVA_00540 0.16 +0.1
38,184 + BACOVA_00540 0.16 -1.1
38,185 - BACOVA_00540 0.16 -2.3
38,185 - BACOVA_00540 0.16 +2.4
38,190 + BACOVA_00540 0.17 +3.2
38,190 - BACOVA_00540 0.17 -2.2
38,191 - BACOVA_00540 0.17 +0.4
38,239 - BACOVA_00540 0.18 +0.6
38,267 + BACOVA_00540 0.19 +0.6
38,292 + BACOVA_00540 0.20 +0.3
38,293 - BACOVA_00540 0.20 +1.9
38,294 + BACOVA_00540 0.20 -1.2
38,294 + BACOVA_00540 0.20 -1.2
38,294 + BACOVA_00540 0.20 +0.8
38,296 + BACOVA_00540 0.20 -0.9
38,296 + BACOVA_00540 0.20 -0.6
38,297 - BACOVA_00540 0.20 -0.9
38,339 + BACOVA_00540 0.22 -0.8
38,392 - BACOVA_00540 0.23 +0.1
38,410 + BACOVA_00540 0.24 +2.3
38,411 - BACOVA_00540 0.24 +0.1
38,467 - BACOVA_00540 0.26 -0.6
38,487 + BACOVA_00540 0.27 -1.9
38,488 - BACOVA_00540 0.27 -0.2
38,488 - BACOVA_00540 0.27 +0.8
38,505 + BACOVA_00540 0.27 -0.3
38,512 + BACOVA_00540 0.27 -0.8
38,513 - BACOVA_00540 0.27 -1.6
38,531 - BACOVA_00540 0.28 -2.0
38,533 - BACOVA_00540 0.28 +0.4
38,583 + BACOVA_00540 0.30 +1.8
38,593 - BACOVA_00540 0.30 -0.7
38,593 - BACOVA_00540 0.30 +0.2
38,611 + BACOVA_00540 0.31 -0.6
38,625 + BACOVA_00540 0.31 +1.4
38,749 + BACOVA_00540 0.35 -0.1
38,830 + BACOVA_00540 0.38 +0.6
38,867 + BACOVA_00540 0.39 -1.0
38,867 + BACOVA_00540 0.39 +0.5
38,868 - BACOVA_00540 0.39 +0.4
38,871 - BACOVA_00540 0.39 -0.0
38,980 + BACOVA_00540 0.43 +0.0
39,007 - BACOVA_00540 0.44 +1.1
39,017 + BACOVA_00540 0.44 +0.3
39,043 + BACOVA_00540 0.45 -1.3
39,044 - BACOVA_00540 0.45 -0.7
39,053 + BACOVA_00540 0.46 +0.2
39,072 - BACOVA_00540 0.46 +0.1
39,084 - BACOVA_00540 0.47 +2.7
39,139 + BACOVA_00540 0.48 +1.1
39,144 + BACOVA_00540 0.49 +1.0
39,172 + BACOVA_00540 0.50 -0.0
39,172 + BACOVA_00540 0.50 -0.7
39,173 - BACOVA_00540 0.50 +3.0
39,173 - BACOVA_00540 0.50 -0.9
39,231 + BACOVA_00540 0.52 +0.7
39,261 + BACOVA_00540 0.53 +2.4
39,262 - BACOVA_00540 0.53 -1.0
39,262 - BACOVA_00540 0.53 +0.2
39,289 - BACOVA_00540 0.53 +0.2
39,321 + BACOVA_00540 0.55 -0.2
39,349 - BACOVA_00540 0.55 -0.6
39,408 - BACOVA_00540 0.57 +0.4
39,499 + BACOVA_00540 0.61 -1.2
39,502 - BACOVA_00540 0.61 +2.6
39,536 - BACOVA_00540 0.62 +0.0
39,536 - BACOVA_00540 0.62 +1.7
39,577 - BACOVA_00540 0.63 +0.4
39,602 - BACOVA_00540 0.64 -0.9
39,631 - BACOVA_00540 0.65 -0.7
39,665 + BACOVA_00540 0.66 -0.2
39,688 + BACOVA_00540 0.67 -1.2
39,689 - BACOVA_00540 0.67 +0.0
39,710 + BACOVA_00540 0.68 +2.1
39,712 + BACOVA_00540 0.68 -0.6
39,793 + BACOVA_00540 0.70 -0.4
39,794 - BACOVA_00540 0.70 -0.2
39,813 + BACOVA_00540 0.71 +1.1
39,855 + BACOVA_00540 0.72 +0.0
39,856 - BACOVA_00540 0.73 +1.7
39,913 + BACOVA_00540 0.74 -0.3
39,979 + BACOVA_00540 0.77 +0.6
39,979 + BACOVA_00540 0.77 +0.8
39,988 + BACOVA_00540 0.77 -0.9
40,242 + BACOVA_00540 0.85 -1.9
40,251 + BACOVA_00540 0.86 -0.1
40,251 + BACOVA_00540 0.86 -0.9
40,276 + BACOVA_00540 0.87 +0.4
40,300 - BACOVA_00540 0.87 -1.4
40,320 + BACOVA_00540 0.88 -1.1
40,320 + BACOVA_00540 0.88 -1.8
40,321 - BACOVA_00540 0.88 -0.9
40,321 - BACOVA_00540 0.88 +0.8
40,321 - BACOVA_00540 0.88 +0.3
40,321 - BACOVA_00540 0.88 -1.6
40,341 + BACOVA_00540 0.89 +2.0
40,373 + BACOVA_00540 0.90 +0.1
40,452 + -0.6
40,452 + -1.1
40,497 + -1.2
40,497 + -0.6
40,498 - +0.2
40,498 - +2.6
40,498 - -0.7
40,500 - -0.7
40,501 + +0.2
40,502 - +1.1
40,554 + -1.7
40,576 + +0.4
40,576 + +0.2
40,617 + -0.1
40,621 + -0.6
40,621 + +0.4
40,621 + +1.4
40,622 - +0.4
40,624 + -1.4
40,624 + -0.0
40,634 + +1.6
40,661 - +0.4
40,661 - -1.1
40,661 - +0.4
40,664 + -0.6
40,678 - -0.9
40,777 + -1.4
40,778 - -0.2
40,960 + -0.0
40,964 + -1.0
40,970 + +0.7
41,158 + BACOVA_00542 0.22 -1.4
41,298 + BACOVA_00542 0.50 -0.2
41,387 + BACOVA_00542 0.68 -0.3
41,390 + BACOVA_00542 0.68 +1.4
41,514 + +0.7
41,514 + -2.3
41,566 + +0.9

Or see this region's nucleotide sequence