Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00506

Experiment: a-Cyclodextrin 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00503 and BACOVA_00505 are separated by 148 nucleotidesBACOVA_00505 and BACOVA_00504 overlap by 50 nucleotidesBACOVA_00504 and BACOVA_00506 are separated by 23 nucleotidesBACOVA_00506 and BACOVA_00507 are separated by 46 nucleotidesBACOVA_00507 and BACOVA_00508 overlap by 4 nucleotides BACOVA_00503: BACOVA_00503 - hypothetical protein, at 1,100 to 1,516 _00503 BACOVA_00505: BACOVA_00505 - hypothetical protein, at 1,665 to 1,796 _00505 BACOVA_00504: BACOVA_00504 - hypothetical protein, at 1,747 to 1,959 _00504 BACOVA_00506: BACOVA_00506 - Dyp-type peroxidase family protein, at 1,983 to 2,933 _00506 BACOVA_00507: BACOVA_00507 - 6-phosphogluconolactonase, at 2,980 to 3,711 _00507 BACOVA_00508: BACOVA_00508 - glucose-6-phosphate dehydrogenase, at 3,708 to 5,204 _00508 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.991 kb on + strandat 1.026 kb on - strandat 1.052 kb on + strandat 1.053 kb on - strandat 1.115 kb on - strandat 1.116 kb on + strandat 1.116 kb on + strandat 1.128 kb on + strandat 1.146 kb on - strand, within BACOVA_00503at 1.146 kb on - strand, within BACOVA_00503at 1.146 kb on - strand, within BACOVA_00503at 1.148 kb on - strand, within BACOVA_00503at 1.150 kb on + strand, within BACOVA_00503at 1.150 kb on + strand, within BACOVA_00503at 1.151 kb on - strand, within BACOVA_00503at 1.197 kb on + strand, within BACOVA_00503at 1.211 kb on - strand, within BACOVA_00503at 1.226 kb on + strand, within BACOVA_00503at 1.232 kb on + strand, within BACOVA_00503at 1.258 kb on + strand, within BACOVA_00503at 1.262 kb on - strand, within BACOVA_00503at 1.282 kb on + strand, within BACOVA_00503at 1.283 kb on - strand, within BACOVA_00503at 1.290 kb on + strand, within BACOVA_00503at 1.290 kb on + strand, within BACOVA_00503at 1.299 kb on + strand, within BACOVA_00503at 1.305 kb on - strand, within BACOVA_00503at 1.315 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.360 kb on + strand, within BACOVA_00503at 1.361 kb on - strand, within BACOVA_00503at 1.387 kb on + strand, within BACOVA_00503at 1.388 kb on - strand, within BACOVA_00503at 1.388 kb on - strand, within BACOVA_00503at 1.393 kb on - strand, within BACOVA_00503at 1.403 kb on + strand, within BACOVA_00503at 1.403 kb on + strand, within BACOVA_00503at 1.405 kb on + strand, within BACOVA_00503at 1.454 kb on - strand, within BACOVA_00503at 1.458 kb on + strand, within BACOVA_00503at 1.459 kb on - strand, within BACOVA_00503at 1.523 kb on - strandat 1.547 kb on + strandat 1.548 kb on - strandat 1.551 kb on - strandat 1.555 kb on - strandat 1.596 kb on - strandat 1.604 kb on + strandat 1.605 kb on - strandat 1.605 kb on - strandat 1.605 kb on - strandat 1.628 kb on + strandat 1.649 kb on - strandat 1.681 kb on - strand, within BACOVA_00505at 1.692 kb on - strand, within BACOVA_00505at 1.705 kb on + strand, within BACOVA_00505at 1.753 kb on + strandat 1.761 kb on - strandat 1.761 kb on - strandat 1.761 kb on - strandat 1.781 kb on + strandat 1.782 kb on - strandat 1.839 kb on + strand, within BACOVA_00504at 1.868 kb on + strand, within BACOVA_00504at 1.920 kb on - strand, within BACOVA_00504at 1.930 kb on + strand, within BACOVA_00504at 1.930 kb on + strand, within BACOVA_00504at 1.931 kb on - strand, within BACOVA_00504at 1.934 kb on + strand, within BACOVA_00504at 1.935 kb on - strand, within BACOVA_00504at 1.935 kb on - strand, within BACOVA_00504at 1.957 kb on + strandat 2.001 kb on + strandat 2.049 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.093 kb on + strand, within BACOVA_00506at 2.093 kb on + strand, within BACOVA_00506at 2.094 kb on - strand, within BACOVA_00506at 2.094 kb on - strand, within BACOVA_00506at 2.121 kb on - strand, within BACOVA_00506at 2.124 kb on - strand, within BACOVA_00506at 2.152 kb on + strand, within BACOVA_00506at 2.152 kb on + strand, within BACOVA_00506at 2.161 kb on + strand, within BACOVA_00506at 2.162 kb on - strand, within BACOVA_00506at 2.162 kb on - strand, within BACOVA_00506at 2.225 kb on + strand, within BACOVA_00506at 2.229 kb on - strand, within BACOVA_00506at 2.229 kb on - strand, within BACOVA_00506at 2.240 kb on + strand, within BACOVA_00506at 2.292 kb on - strand, within BACOVA_00506at 2.329 kb on - strand, within BACOVA_00506at 2.348 kb on + strand, within BACOVA_00506at 2.360 kb on - strand, within BACOVA_00506at 2.377 kb on + strand, within BACOVA_00506at 2.377 kb on + strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.378 kb on - strand, within BACOVA_00506at 2.428 kb on + strand, within BACOVA_00506at 2.428 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.496 kb on - strand, within BACOVA_00506at 2.497 kb on + strand, within BACOVA_00506at 2.497 kb on + strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.498 kb on - strand, within BACOVA_00506at 2.610 kb on + strand, within BACOVA_00506at 2.637 kb on - strand, within BACOVA_00506at 2.652 kb on + strand, within BACOVA_00506at 2.735 kb on + strand, within BACOVA_00506at 2.735 kb on + strand, within BACOVA_00506at 2.736 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506at 2.811 kb on + strand, within BACOVA_00506at 2.842 kb on - strandat 2.846 kb on + strandat 2.904 kb on - strandat 2.924 kb on - strandat 2.971 kb on - strandat 2.981 kb on + strandat 2.981 kb on + strandat 2.981 kb on + strandat 2.982 kb on - strandat 2.998 kb on - strandat 3.011 kb on + strandat 3.027 kb on + strandat 3.034 kb on - strandat 3.044 kb on - strandat 3.068 kb on + strand, within BACOVA_00507at 3.068 kb on + strand, within BACOVA_00507at 3.069 kb on - strand, within BACOVA_00507at 3.069 kb on - strand, within BACOVA_00507at 3.123 kb on + strand, within BACOVA_00507at 3.153 kb on - strand, within BACOVA_00507at 3.227 kb on + strand, within BACOVA_00507at 3.227 kb on + strand, within BACOVA_00507at 3.228 kb on - strand, within BACOVA_00507at 3.228 kb on - strand, within BACOVA_00507at 3.231 kb on + strand, within BACOVA_00507at 3.231 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.309 kb on + strand, within BACOVA_00507at 3.359 kb on - strand, within BACOVA_00507at 3.416 kb on - strand, within BACOVA_00507at 3.433 kb on - strand, within BACOVA_00507at 3.470 kb on + strand, within BACOVA_00507at 3.471 kb on - strand, within BACOVA_00507at 3.474 kb on + strand, within BACOVA_00507at 3.475 kb on - strand, within BACOVA_00507at 3.552 kb on + strand, within BACOVA_00507at 3.553 kb on - strand, within BACOVA_00507at 3.554 kb on + strand, within BACOVA_00507at 3.568 kb on + strand, within BACOVA_00507at 3.595 kb on - strand, within BACOVA_00507at 3.595 kb on - strand, within BACOVA_00507at 3.662 kb on - strandat 3.712 kb on - strandat 3.746 kb on + strandat 3.829 kb on + strandat 3.897 kb on + strand, within BACOVA_00508at 3.915 kb on - strand, within BACOVA_00508at 3.919 kb on - strand, within BACOVA_00508

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C)
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991 + -0.6
1,026 - -0.1
1,052 + +0.7
1,053 - -0.2
1,115 - -1.6
1,116 + -1.3
1,116 + -1.4
1,128 + +0.8
1,146 - BACOVA_00503 0.11 -1.0
1,146 - BACOVA_00503 0.11 +0.0
1,146 - BACOVA_00503 0.11 +0.8
1,148 - BACOVA_00503 0.12 +2.5
1,150 + BACOVA_00503 0.12 -1.4
1,150 + BACOVA_00503 0.12 -0.6
1,151 - BACOVA_00503 0.12 +2.5
1,197 + BACOVA_00503 0.23 +1.1
1,211 - BACOVA_00503 0.27 -2.5
1,226 + BACOVA_00503 0.30 +1.4
1,232 + BACOVA_00503 0.32 +0.7
1,258 + BACOVA_00503 0.38 +2.4
1,262 - BACOVA_00503 0.39 +1.7
1,282 + BACOVA_00503 0.44 -0.2
1,283 - BACOVA_00503 0.44 -1.7
1,290 + BACOVA_00503 0.46 -2.2
1,290 + BACOVA_00503 0.46 +2.2
1,299 + BACOVA_00503 0.48 +1.9
1,305 - BACOVA_00503 0.49 +0.4
1,315 + BACOVA_00503 0.52 +1.6
1,360 + BACOVA_00503 0.62 -1.4
1,360 + BACOVA_00503 0.62 +1.4
1,360 + BACOVA_00503 0.62 +2.7
1,360 + BACOVA_00503 0.62 +0.4
1,360 + BACOVA_00503 0.62 -0.9
1,361 - BACOVA_00503 0.63 -0.9
1,387 + BACOVA_00503 0.69 +0.8
1,388 - BACOVA_00503 0.69 -0.9
1,388 - BACOVA_00503 0.69 -0.2
1,393 - BACOVA_00503 0.70 +0.5
1,403 + BACOVA_00503 0.73 +0.7
1,403 + BACOVA_00503 0.73 +0.5
1,405 + BACOVA_00503 0.73 -0.8
1,454 - BACOVA_00503 0.85 +0.3
1,458 + BACOVA_00503 0.86 -0.6
1,459 - BACOVA_00503 0.86 -0.9
1,523 - -0.2
1,547 + +1.0
1,548 - -0.2
1,551 - -0.4
1,555 - +0.6
1,596 - -0.8
1,604 + -2.0
1,605 - -0.2
1,605 - -0.2
1,605 - +0.1
1,628 + +0.0
1,649 - -1.6
1,681 - BACOVA_00505 0.12 -2.1
1,692 - BACOVA_00505 0.20 -1.2
1,705 + BACOVA_00505 0.30 -0.9
1,753 + -0.9
1,761 - -0.4
1,761 - +1.0
1,761 - -0.1
1,781 + +2.4
1,782 - +0.4
1,839 + BACOVA_00504 0.43 -0.2
1,868 + BACOVA_00504 0.57 +3.4
1,920 - BACOVA_00504 0.81 -0.9
1,930 + BACOVA_00504 0.86 +3.0
1,930 + BACOVA_00504 0.86 +1.0
1,931 - BACOVA_00504 0.86 +0.8
1,934 + BACOVA_00504 0.88 -0.9
1,935 - BACOVA_00504 0.88 +2.4
1,935 - BACOVA_00504 0.88 +1.4
1,957 + +0.2
2,001 + +0.3
2,049 - +0.4
2,052 - +1.6
2,052 - +2.2
2,052 - +0.0
2,093 + BACOVA_00506 0.12 +1.1
2,093 + BACOVA_00506 0.12 +2.3
2,094 - BACOVA_00506 0.12 +1.7
2,094 - BACOVA_00506 0.12 +0.0
2,121 - BACOVA_00506 0.15 -1.2
2,124 - BACOVA_00506 0.15 -0.9
2,152 + BACOVA_00506 0.18 -0.2
2,152 + BACOVA_00506 0.18 -1.2
2,161 + BACOVA_00506 0.19 +0.1
2,162 - BACOVA_00506 0.19 -0.5
2,162 - BACOVA_00506 0.19 -1.0
2,225 + BACOVA_00506 0.25 -0.0
2,229 - BACOVA_00506 0.26 -1.4
2,229 - BACOVA_00506 0.26 -0.9
2,240 + BACOVA_00506 0.27 +0.8
2,292 - BACOVA_00506 0.32 +0.1
2,329 - BACOVA_00506 0.36 -0.9
2,348 + BACOVA_00506 0.38 +1.2
2,360 - BACOVA_00506 0.40 +0.4
2,377 + BACOVA_00506 0.41 -0.9
2,377 + BACOVA_00506 0.41 +0.2
2,378 - BACOVA_00506 0.42 +0.8
2,378 - BACOVA_00506 0.42 +0.7
2,378 - BACOVA_00506 0.42 -0.7
2,428 + BACOVA_00506 0.47 -0.7
2,428 - BACOVA_00506 0.47 +0.1
2,496 - BACOVA_00506 0.54 -0.9
2,496 - BACOVA_00506 0.54 +0.1
2,496 - BACOVA_00506 0.54 +1.4
2,497 + BACOVA_00506 0.54 +1.0
2,497 + BACOVA_00506 0.54 -2.7
2,498 - BACOVA_00506 0.54 -1.6
2,498 - BACOVA_00506 0.54 +1.4
2,498 - BACOVA_00506 0.54 -1.2
2,610 + BACOVA_00506 0.66 -0.9
2,637 - BACOVA_00506 0.69 +0.8
2,652 + BACOVA_00506 0.70 +1.2
2,735 + BACOVA_00506 0.79 +1.1
2,735 + BACOVA_00506 0.79 -0.7
2,736 - BACOVA_00506 0.79 +0.0
2,772 - BACOVA_00506 0.83 -0.6
2,772 - BACOVA_00506 0.83 -0.6
2,811 + BACOVA_00506 0.87 +0.8
2,842 - +0.6
2,846 + +0.1
2,904 - -2.2
2,924 - +0.1
2,971 - +1.6
2,981 + +0.4
2,981 + +1.4
2,981 + -1.7
2,982 - -2.0
2,998 - -0.4
3,011 + -2.1
3,027 + +0.1
3,034 - -0.3
3,044 - -2.6
3,068 + BACOVA_00507 0.12 -2.0
3,068 + BACOVA_00507 0.12 -1.7
3,069 - BACOVA_00507 0.12 -1.3
3,069 - BACOVA_00507 0.12 -0.9
3,123 + BACOVA_00507 0.20 -2.6
3,153 - BACOVA_00507 0.24 -1.3
3,227 + BACOVA_00507 0.34 -2.6
3,227 + BACOVA_00507 0.34 -0.6
3,228 - BACOVA_00507 0.34 -1.8
3,228 - BACOVA_00507 0.34 +0.3
3,231 + BACOVA_00507 0.34 +0.5
3,231 + BACOVA_00507 0.34 -0.9
3,307 + BACOVA_00507 0.45 -0.2
3,307 + BACOVA_00507 0.45 -1.7
3,307 + BACOVA_00507 0.45 +1.0
3,309 + BACOVA_00507 0.45 -2.5
3,359 - BACOVA_00507 0.52 +1.3
3,416 - BACOVA_00507 0.60 -1.7
3,433 - BACOVA_00507 0.62 -0.6
3,470 + BACOVA_00507 0.67 -1.7
3,471 - BACOVA_00507 0.67 -2.3
3,474 + BACOVA_00507 0.67 -1.8
3,475 - BACOVA_00507 0.68 +0.1
3,552 + BACOVA_00507 0.78 -2.6
3,553 - BACOVA_00507 0.78 -1.5
3,554 + BACOVA_00507 0.78 +0.6
3,568 + BACOVA_00507 0.80 -1.3
3,595 - BACOVA_00507 0.84 -1.5
3,595 - BACOVA_00507 0.84 -1.4
3,662 - -0.2
3,712 - -1.2
3,746 + +0.4
3,829 + -0.3
3,897 + BACOVA_00508 0.13 -0.3
3,915 - BACOVA_00508 0.14 +1.0
3,919 - BACOVA_00508 0.14 -0.4

Or see this region's nucleotide sequence