Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05155 and BACOVA_05156 are separated by 122 nucleotides BACOVA_05156 and BACOVA_05157 are separated by 632 nucleotides BACOVA_05157 and BACOVA_05159 are separated by 111 nucleotides BACOVA_05159 and BACOVA_05158 overlap by 86 nucleotides
BACOVA_05155: BACOVA_05155 - hypothetical protein, at 636,648 to 636,818
_05155
BACOVA_05156: BACOVA_05156 - hypothetical protein, at 636,941 to 637,069
_05156
BACOVA_05157: BACOVA_05157 - hypothetical protein, at 637,702 to 638,526
_05157
BACOVA_05159: BACOVA_05159 - hypothetical protein, at 638,638 to 638,778
_05159
BACOVA_05158: BACOVA_05158 - hypothetical protein, at 638,693 to 640,900
_05158
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 636.722 kb on + strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.784 kb on - strand, within BACOVA_05155 at 636.786 kb on - strand, within BACOVA_05155 at 636.806 kb on + strand at 636.807 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.812 kb on - strand at 636.812 kb on - strand at 636.813 kb on + strand at 636.813 kb on + strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.816 kb on + strand at 636.816 kb on + strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.820 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.830 kb on - strand at 636.867 kb on - strand at 636.867 kb on - strand at 636.871 kb on + strand at 636.871 kb on + strand at 636.894 kb on + strand at 636.901 kb on - strand at 636.901 kb on - strand at 636.979 kb on + strand, within BACOVA_05156 at 636.980 kb on - strand, within BACOVA_05156 at 637.053 kb on + strand, within BACOVA_05156 at 637.064 kb on + strand at 637.085 kb on - strand at 637.094 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.191 kb on - strand at 637.191 kb on - strand at 637.222 kb on - strand at 637.397 kb on - strand at 637.397 kb on - strand at 637.399 kb on - strand at 637.461 kb on + strand at 637.582 kb on + strand at 637.585 kb on + strand at 637.586 kb on - strand at 637.592 kb on + strand at 637.605 kb on + strand at 637.612 kb on - strand at 637.638 kb on + strand at 637.639 kb on - strand at 637.639 kb on - strand at 637.668 kb on + strand at 637.698 kb on - strand at 637.698 kb on - strand at 637.817 kb on + strand, within BACOVA_05157 at 637.818 kb on - strand, within BACOVA_05157 at 637.885 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.891 kb on - strand, within BACOVA_05157 at 637.891 kb on - strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.893 kb on - strand, within BACOVA_05157 at 637.893 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.908 kb on + strand, within BACOVA_05157 at 637.921 kb on - strand, within BACOVA_05157 at 637.921 kb on - strand, within BACOVA_05157 at 637.954 kb on + strand, within BACOVA_05157 at 637.979 kb on - strand, within BACOVA_05157 at 637.987 kb on - strand, within BACOVA_05157 at 637.994 kb on + strand, within BACOVA_05157 at 638.033 kb on + strand, within BACOVA_05157 at 638.033 kb on + strand, within BACOVA_05157 at 638.034 kb on - strand, within BACOVA_05157 at 638.083 kb on - strand, within BACOVA_05157 at 638.083 kb on - strand, within BACOVA_05157 at 638.084 kb on + strand, within BACOVA_05157 at 638.085 kb on - strand, within BACOVA_05157 at 638.232 kb on + strand, within BACOVA_05157 at 638.234 kb on + strand, within BACOVA_05157 at 638.234 kb on + strand, within BACOVA_05157 at 638.234 kb on + strand, within BACOVA_05157 at 638.237 kb on + strand, within BACOVA_05157 at 638.250 kb on + strand, within BACOVA_05157 at 638.281 kb on - strand, within BACOVA_05157 at 638.281 kb on - strand, within BACOVA_05157 at 638.325 kb on + strand, within BACOVA_05157 at 638.326 kb on - strand, within BACOVA_05157 at 638.350 kb on + strand, within BACOVA_05157 at 638.350 kb on + strand, within BACOVA_05157 at 638.351 kb on - strand, within BACOVA_05157 at 638.381 kb on - strand, within BACOVA_05157 at 638.388 kb on + strand, within BACOVA_05157 at 638.428 kb on - strand, within BACOVA_05157 at 638.430 kb on - strand, within BACOVA_05157 at 638.466 kb on - strand at 638.466 kb on - strand at 638.466 kb on - strand at 638.475 kb on + strand at 638.476 kb on - strand at 638.478 kb on + strand at 638.479 kb on - strand at 638.491 kb on - strand at 638.522 kb on + strand at 638.523 kb on - strand at 638.523 kb on - strand at 638.536 kb on + strand at 638.540 kb on - strand at 638.583 kb on + strand at 638.590 kb on - strand at 638.591 kb on + strand at 638.591 kb on + strand at 638.592 kb on - strand at 638.592 kb on - strand at 638.595 kb on + strand at 638.595 kb on + strand at 638.596 kb on - strand at 638.596 kb on - strand at 638.596 kb on - strand at 638.597 kb on + strand at 638.639 kb on + strand at 638.648 kb on - strand at 638.676 kb on + strand, within BACOVA_05159 at 638.679 kb on - strand, within BACOVA_05159 at 638.679 kb on - strand, within BACOVA_05159 at 638.691 kb on + strand, within BACOVA_05159 at 638.703 kb on + strand at 638.724 kb on + strand at 638.729 kb on + strand at 638.739 kb on + strand at 638.787 kb on + strand at 638.832 kb on + strand at 638.832 kb on + strand at 638.833 kb on - strand at 638.862 kb on - strand at 638.895 kb on + strand at 638.896 kb on - strand at 638.896 kb on - strand at 638.897 kb on + strand at 638.898 kb on - strand at 638.900 kb on - strand at 638.900 kb on - strand at 638.900 kb on - strand at 638.901 kb on + strand at 638.901 kb on + strand at 638.902 kb on - strand at 638.935 kb on + strand, within BACOVA_05158 at 638.945 kb on + strand, within BACOVA_05158 at 638.945 kb on + strand, within BACOVA_05158 at 638.945 kb on + strand, within BACOVA_05158 at 638.945 kb on - strand, within BACOVA_05158 at 638.957 kb on - strand, within BACOVA_05158 at 638.987 kb on + strand, within BACOVA_05158 at 639.004 kb on + strand, within BACOVA_05158 at 639.005 kb on - strand, within BACOVA_05158 at 639.035 kb on + strand, within BACOVA_05158 at 639.035 kb on + strand, within BACOVA_05158 at 639.099 kb on + strand, within BACOVA_05158 at 639.099 kb on + strand, within BACOVA_05158 at 639.110 kb on - strand, within BACOVA_05158 at 639.114 kb on + strand, within BACOVA_05158 at 639.122 kb on + strand, within BACOVA_05158 at 639.123 kb on - strand, within BACOVA_05158 at 639.154 kb on - strand, within BACOVA_05158 at 639.156 kb on + strand, within BACOVA_05158 at 639.157 kb on - strand, within BACOVA_05158 at 639.191 kb on - strand, within BACOVA_05158 at 639.195 kb on - strand, within BACOVA_05158 at 639.201 kb on + strand, within BACOVA_05158 at 639.202 kb on - strand, within BACOVA_05158 at 639.224 kb on - strand, within BACOVA_05158 at 639.287 kb on + strand, within BACOVA_05158 at 639.287 kb on + strand, within BACOVA_05158 at 639.289 kb on + strand, within BACOVA_05158 at 639.290 kb on - strand, within BACOVA_05158 at 639.355 kb on - strand, within BACOVA_05158 at 639.361 kb on + strand, within BACOVA_05158 at 639.362 kb on - strand, within BACOVA_05158 at 639.419 kb on + strand, within BACOVA_05158 at 639.426 kb on + strand, within BACOVA_05158 at 639.427 kb on - strand, within BACOVA_05158 at 639.466 kb on + strand, within BACOVA_05158 at 639.471 kb on - strand, within BACOVA_05158 at 639.471 kb on - strand, within BACOVA_05158 at 639.484 kb on - strand, within BACOVA_05158 at 639.491 kb on - strand, within BACOVA_05158
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 636,722 + BACOVA_05155 0.43 +0.0 636,723 - BACOVA_05155 0.44 +0.6 636,723 - BACOVA_05155 0.44 -0.3 636,761 - BACOVA_05155 0.66 +0.4 636,761 - BACOVA_05155 0.66 +0.6 636,784 - BACOVA_05155 0.80 +0.8 636,786 - BACOVA_05155 0.81 +1.2 636,806 + +0.0 636,807 - +1.0 636,810 - +0.4 636,810 - +0.6 636,810 - +1.6 636,812 - +0.8 636,812 - +1.3 636,813 + -0.2 636,813 + +0.4 636,814 - -1.3 636,814 - -0.2 636,814 - +0.9 636,814 - +1.0 636,816 + +0.1 636,816 + -0.2 636,817 - +0.2 636,817 - -0.1 636,817 - +0.8 636,817 - +0.5 636,820 - -0.4 636,825 - +0.1 636,825 - -0.4 636,825 - -0.8 636,827 - -0.5 636,827 - -1.8 636,827 - -0.7 636,830 - -0.2 636,867 - -1.5 636,867 - +0.2 636,871 + -0.0 636,871 + +1.6 636,894 + +0.7 636,901 - -0.5 636,901 - +0.0 636,979 + BACOVA_05156 0.29 -1.0 636,980 - BACOVA_05156 0.30 -1.0 637,053 + BACOVA_05156 0.87 -1.2 637,064 + -1.5 637,085 - -0.7 637,094 - +0.5 637,096 - -1.1 637,096 - +0.3 637,096 - +0.1 637,191 - +0.2 637,191 - -1.1 637,222 - +0.0 637,397 - -0.4 637,397 - +0.1 637,399 - +1.5 637,461 + -1.3 637,582 + +0.0 637,585 + +0.0 637,586 - +0.4 637,592 + +0.1 637,605 + +0.5 637,612 - -0.8 637,638 + -0.4 637,639 - -0.2 637,639 - -0.0 637,668 + +0.2 637,698 - +0.4 637,698 - -0.6 637,817 + BACOVA_05157 0.14 +0.2 637,818 - BACOVA_05157 0.14 -0.8 637,885 + BACOVA_05157 0.22 +1.5 637,890 + BACOVA_05157 0.23 -1.0 637,890 + BACOVA_05157 0.23 +0.3 637,890 + BACOVA_05157 0.23 -0.5 637,890 + BACOVA_05157 0.23 -0.4 637,891 - BACOVA_05157 0.23 -0.5 637,891 - BACOVA_05157 0.23 +0.2 637,892 + BACOVA_05157 0.23 +0.0 637,892 + BACOVA_05157 0.23 -1.1 637,892 + BACOVA_05157 0.23 +0.0 637,893 - BACOVA_05157 0.23 -0.0 637,893 - BACOVA_05157 0.23 +0.2 637,895 - BACOVA_05157 0.23 +0.0 637,895 - BACOVA_05157 0.23 +0.9 637,895 - BACOVA_05157 0.23 +0.5 637,908 + BACOVA_05157 0.25 -1.4 637,921 - BACOVA_05157 0.27 +0.3 637,921 - BACOVA_05157 0.27 +1.6 637,954 + BACOVA_05157 0.31 +0.0 637,979 - BACOVA_05157 0.34 -0.6 637,987 - BACOVA_05157 0.35 +0.3 637,994 + BACOVA_05157 0.35 -0.5 638,033 + BACOVA_05157 0.40 +0.2 638,033 + BACOVA_05157 0.40 +0.0 638,034 - BACOVA_05157 0.40 -0.4 638,083 - BACOVA_05157 0.46 +0.1 638,083 - BACOVA_05157 0.46 -0.3 638,084 + BACOVA_05157 0.46 +0.7 638,085 - BACOVA_05157 0.46 -1.1 638,232 + BACOVA_05157 0.64 -0.3 638,234 + BACOVA_05157 0.64 -0.2 638,234 + BACOVA_05157 0.64 +1.0 638,234 + BACOVA_05157 0.64 -0.4 638,237 + BACOVA_05157 0.65 +0.5 638,250 + BACOVA_05157 0.66 +1.0 638,281 - BACOVA_05157 0.70 +0.4 638,281 - BACOVA_05157 0.70 +0.3 638,325 + BACOVA_05157 0.76 +0.3 638,326 - BACOVA_05157 0.76 +0.5 638,350 + BACOVA_05157 0.79 +0.3 638,350 + BACOVA_05157 0.79 +0.5 638,351 - BACOVA_05157 0.79 +0.6 638,381 - BACOVA_05157 0.82 -0.3 638,388 + BACOVA_05157 0.83 +0.4 638,428 - BACOVA_05157 0.88 +0.2 638,430 - BACOVA_05157 0.88 -0.8 638,466 - +0.0 638,466 - +0.4 638,466 - +0.7 638,475 + +0.1 638,476 - +0.3 638,478 + +0.1 638,479 - +0.6 638,491 - +0.3 638,522 + +0.9 638,523 - +0.7 638,523 - +2.6 638,536 + -0.3 638,540 - +0.0 638,583 + -0.8 638,590 - +1.5 638,591 + +1.3 638,591 + +0.4 638,592 - -0.5 638,592 - +0.5 638,595 + +0.2 638,595 + +0.2 638,596 - +0.1 638,596 - -0.6 638,596 - -0.4 638,597 + -1.0 638,639 + +1.0 638,648 - +1.3 638,676 + BACOVA_05159 0.27 -0.1 638,679 - BACOVA_05159 0.29 -0.4 638,679 - BACOVA_05159 0.29 +0.5 638,691 + BACOVA_05159 0.38 -0.1 638,703 + +0.5 638,724 + -0.1 638,729 + +0.2 638,739 + +0.3 638,787 + +0.4 638,832 + -0.1 638,832 + -1.0 638,833 - +0.3 638,862 - -0.2 638,895 + -0.5 638,896 - -1.0 638,896 - +1.0 638,897 + +0.6 638,898 - +0.4 638,900 - +1.4 638,900 - -0.0 638,900 - +1.8 638,901 + -0.1 638,901 + +0.7 638,902 - -0.7 638,935 + BACOVA_05158 0.11 +0.3 638,945 + BACOVA_05158 0.11 -0.5 638,945 + BACOVA_05158 0.11 +0.0 638,945 + BACOVA_05158 0.11 -0.1 638,945 - BACOVA_05158 0.11 +0.2 638,957 - BACOVA_05158 0.12 +1.0 638,987 + BACOVA_05158 0.13 +0.0 639,004 + BACOVA_05158 0.14 +0.2 639,005 - BACOVA_05158 0.14 -0.8 639,035 + BACOVA_05158 0.15 +0.1 639,035 + BACOVA_05158 0.15 -0.1 639,099 + BACOVA_05158 0.18 +1.6 639,099 + BACOVA_05158 0.18 -0.3 639,110 - BACOVA_05158 0.19 -0.2 639,114 + BACOVA_05158 0.19 +2.0 639,122 + BACOVA_05158 0.19 -1.5 639,123 - BACOVA_05158 0.19 -0.7 639,154 - BACOVA_05158 0.21 +0.4 639,156 + BACOVA_05158 0.21 +0.4 639,157 - BACOVA_05158 0.21 +0.5 639,191 - BACOVA_05158 0.23 +0.0 639,195 - BACOVA_05158 0.23 +0.0 639,201 + BACOVA_05158 0.23 +0.2 639,202 - BACOVA_05158 0.23 -0.4 639,224 - BACOVA_05158 0.24 +0.3 639,287 + BACOVA_05158 0.27 -1.1 639,287 + BACOVA_05158 0.27 +0.3 639,289 + BACOVA_05158 0.27 +0.9 639,290 - BACOVA_05158 0.27 -0.1 639,355 - BACOVA_05158 0.30 +0.2 639,361 + BACOVA_05158 0.30 -0.1 639,362 - BACOVA_05158 0.30 -0.3 639,419 + BACOVA_05158 0.33 +0.7 639,426 + BACOVA_05158 0.33 +0.8 639,427 - BACOVA_05158 0.33 -0.4 639,466 + BACOVA_05158 0.35 -0.1 639,471 - BACOVA_05158 0.35 +0.4 639,471 - BACOVA_05158 0.35 -0.2 639,484 - BACOVA_05158 0.36 +0.1 639,491 - BACOVA_05158 0.36 +1.6
Or see this region's nucleotide sequence