Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04920

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04919 and BACOVA_04920 are separated by 34 nucleotidesBACOVA_04920 and BACOVA_04921 are separated by 41 nucleotides BACOVA_04919: BACOVA_04919 - hypothetical protein, at 326,758 to 328,563 _04919 BACOVA_04920: BACOVA_04920 - hypothetical protein, at 328,598 to 330,985 _04920 BACOVA_04921: BACOVA_04921 - TonB-linked outer membrane protein, SusC/RagA family, at 331,027 to 334,242 _04921 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 327.610 kb on + strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.646 kb on - strand, within BACOVA_04919at 327.705 kb on + strand, within BACOVA_04919at 327.706 kb on - strand, within BACOVA_04919at 327.716 kb on + strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.720 kb on + strand, within BACOVA_04919at 327.748 kb on + strand, within BACOVA_04919at 327.814 kb on - strand, within BACOVA_04919at 327.924 kb on + strand, within BACOVA_04919at 327.960 kb on - strand, within BACOVA_04919at 327.964 kb on - strand, within BACOVA_04919at 327.964 kb on - strand, within BACOVA_04919at 327.964 kb on - strand, within BACOVA_04919at 328.015 kb on - strand, within BACOVA_04919at 328.015 kb on - strand, within BACOVA_04919at 328.081 kb on - strand, within BACOVA_04919at 328.125 kb on + strand, within BACOVA_04919at 328.126 kb on - strand, within BACOVA_04919at 328.202 kb on + strand, within BACOVA_04919at 328.212 kb on + strand, within BACOVA_04919at 328.269 kb on + strand, within BACOVA_04919at 328.286 kb on + strand, within BACOVA_04919at 328.286 kb on + strand, within BACOVA_04919at 328.286 kb on + strand, within BACOVA_04919at 328.286 kb on + strand, within BACOVA_04919at 328.287 kb on - strand, within BACOVA_04919at 328.287 kb on - strand, within BACOVA_04919at 328.287 kb on - strand, within BACOVA_04919at 328.404 kb on - strandat 328.500 kb on + strandat 328.504 kb on - strandat 328.504 kb on - strandat 328.523 kb on + strandat 328.524 kb on - strandat 328.524 kb on - strandat 328.526 kb on - strandat 328.527 kb on + strandat 328.527 kb on + strandat 328.527 kb on + strandat 328.528 kb on - strandat 328.561 kb on + strandat 328.574 kb on - strandat 328.577 kb on - strandat 328.585 kb on - strandat 328.592 kb on + strandat 328.593 kb on - strandat 328.617 kb on + strandat 328.618 kb on - strandat 328.618 kb on - strandat 328.663 kb on + strandat 328.739 kb on - strandat 328.760 kb on + strandat 328.763 kb on - strandat 328.804 kb on + strandat 328.861 kb on + strand, within BACOVA_04920at 328.862 kb on - strand, within BACOVA_04920at 328.980 kb on - strand, within BACOVA_04920at 329.029 kb on - strand, within BACOVA_04920at 329.070 kb on - strand, within BACOVA_04920at 329.143 kb on - strand, within BACOVA_04920at 329.203 kb on + strand, within BACOVA_04920at 329.203 kb on + strand, within BACOVA_04920at 329.242 kb on - strand, within BACOVA_04920at 329.242 kb on - strand, within BACOVA_04920at 329.260 kb on - strand, within BACOVA_04920at 329.273 kb on + strand, within BACOVA_04920at 329.274 kb on - strand, within BACOVA_04920at 329.274 kb on - strand, within BACOVA_04920at 329.276 kb on - strand, within BACOVA_04920at 329.276 kb on - strand, within BACOVA_04920at 329.276 kb on - strand, within BACOVA_04920at 329.287 kb on + strand, within BACOVA_04920at 329.296 kb on + strand, within BACOVA_04920at 329.296 kb on + strand, within BACOVA_04920at 329.306 kb on - strand, within BACOVA_04920at 329.339 kb on + strand, within BACOVA_04920at 329.349 kb on + strand, within BACOVA_04920at 329.389 kb on + strand, within BACOVA_04920at 329.406 kb on + strand, within BACOVA_04920at 329.444 kb on - strand, within BACOVA_04920at 329.455 kb on - strand, within BACOVA_04920at 329.472 kb on + strand, within BACOVA_04920at 329.472 kb on + strand, within BACOVA_04920at 329.495 kb on - strand, within BACOVA_04920at 329.503 kb on + strand, within BACOVA_04920at 329.527 kb on + strand, within BACOVA_04920at 329.533 kb on + strand, within BACOVA_04920at 329.533 kb on + strand, within BACOVA_04920at 329.534 kb on - strand, within BACOVA_04920at 329.534 kb on - strand, within BACOVA_04920at 329.534 kb on - strand, within BACOVA_04920at 329.534 kb on - strand, within BACOVA_04920at 329.536 kb on - strand, within BACOVA_04920at 329.600 kb on + strand, within BACOVA_04920at 329.601 kb on - strand, within BACOVA_04920at 329.626 kb on + strand, within BACOVA_04920at 329.717 kb on - strand, within BACOVA_04920at 329.742 kb on - strand, within BACOVA_04920at 329.754 kb on - strand, within BACOVA_04920at 329.758 kb on + strand, within BACOVA_04920at 329.767 kb on + strand, within BACOVA_04920at 329.814 kb on - strand, within BACOVA_04920at 329.848 kb on + strand, within BACOVA_04920at 329.948 kb on + strand, within BACOVA_04920at 329.948 kb on + strand, within BACOVA_04920at 329.952 kb on + strand, within BACOVA_04920at 329.975 kb on - strand, within BACOVA_04920at 329.975 kb on - strand, within BACOVA_04920at 329.975 kb on - strand, within BACOVA_04920at 329.975 kb on - strand, within BACOVA_04920at 329.978 kb on - strand, within BACOVA_04920at 330.022 kb on - strand, within BACOVA_04920at 330.046 kb on + strand, within BACOVA_04920at 330.061 kb on + strand, within BACOVA_04920at 330.062 kb on - strand, within BACOVA_04920at 330.073 kb on + strand, within BACOVA_04920at 330.106 kb on + strand, within BACOVA_04920at 330.106 kb on + strand, within BACOVA_04920at 330.122 kb on - strand, within BACOVA_04920at 330.142 kb on - strand, within BACOVA_04920at 330.142 kb on - strand, within BACOVA_04920at 330.147 kb on + strand, within BACOVA_04920at 330.252 kb on - strand, within BACOVA_04920at 330.252 kb on - strand, within BACOVA_04920at 330.296 kb on + strand, within BACOVA_04920at 330.297 kb on - strand, within BACOVA_04920at 330.323 kb on + strand, within BACOVA_04920at 330.323 kb on + strand, within BACOVA_04920at 330.402 kb on - strand, within BACOVA_04920at 330.416 kb on + strand, within BACOVA_04920at 330.417 kb on - strand, within BACOVA_04920at 330.417 kb on - strand, within BACOVA_04920at 330.423 kb on + strand, within BACOVA_04920at 330.427 kb on + strand, within BACOVA_04920at 330.427 kb on + strand, within BACOVA_04920at 330.428 kb on - strand, within BACOVA_04920at 330.537 kb on - strand, within BACOVA_04920at 330.581 kb on + strand, within BACOVA_04920at 330.592 kb on - strand, within BACOVA_04920at 330.600 kb on - strand, within BACOVA_04920at 330.630 kb on + strand, within BACOVA_04920at 330.631 kb on - strand, within BACOVA_04920at 330.655 kb on - strand, within BACOVA_04920at 330.655 kb on - strand, within BACOVA_04920at 330.665 kb on - strand, within BACOVA_04920at 330.668 kb on + strand, within BACOVA_04920at 330.668 kb on + strand, within BACOVA_04920at 330.674 kb on + strand, within BACOVA_04920at 330.674 kb on + strand, within BACOVA_04920at 330.675 kb on - strand, within BACOVA_04920at 330.675 kb on - strand, within BACOVA_04920at 330.758 kb on - strandat 330.940 kb on + strandat 330.940 kb on + strandat 330.940 kb on + strandat 330.941 kb on - strandat 330.944 kb on + strandat 330.945 kb on - strandat 330.969 kb on + strandat 330.970 kb on - strandat 330.983 kb on + strandat 331.011 kb on - strandat 331.023 kb on + strandat 331.041 kb on - strandat 331.041 kb on - strandat 331.046 kb on + strandat 331.052 kb on + strandat 331.053 kb on - strandat 331.053 kb on - strandat 331.053 kb on - strandat 331.056 kb on + strandat 331.057 kb on - strandat 331.098 kb on + strandat 331.172 kb on + strandat 331.173 kb on - strandat 331.198 kb on - strandat 331.245 kb on - strandat 331.245 kb on - strandat 331.253 kb on - strandat 331.257 kb on - strandat 331.257 kb on - strandat 331.260 kb on + strandat 331.306 kb on - strandat 331.361 kb on - strand, within BACOVA_04921at 331.396 kb on - strand, within BACOVA_04921at 331.419 kb on - strand, within BACOVA_04921at 331.430 kb on + strand, within BACOVA_04921at 331.430 kb on + strand, within BACOVA_04921at 331.465 kb on - strand, within BACOVA_04921at 331.570 kb on - strand, within BACOVA_04921at 331.593 kb on - strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.669 kb on + strand, within BACOVA_04921at 331.753 kb on + strand, within BACOVA_04921at 331.811 kb on + strand, within BACOVA_04921at 331.812 kb on - strand, within BACOVA_04921at 331.812 kb on - strand, within BACOVA_04921at 331.848 kb on + strand, within BACOVA_04921at 331.848 kb on + strand, within BACOVA_04921at 331.849 kb on - strand, within BACOVA_04921at 331.866 kb on + strand, within BACOVA_04921at 331.869 kb on + strand, within BACOVA_04921at 331.873 kb on + strand, within BACOVA_04921at 331.873 kb on + strand, within BACOVA_04921at 331.894 kb on + strand, within BACOVA_04921at 331.964 kb on - strand, within BACOVA_04921at 331.964 kb on - strand, within BACOVA_04921at 331.967 kb on + strand, within BACOVA_04921at 331.974 kb on + strand, within BACOVA_04921

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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327,610 + BACOVA_04919 0.47 +0.0
327,615 - BACOVA_04919 0.47 -0.4
327,615 - BACOVA_04919 0.47 +0.2
327,615 - BACOVA_04919 0.47 -1.0
327,646 - BACOVA_04919 0.49 +0.3
327,705 + BACOVA_04919 0.52 +0.0
327,706 - BACOVA_04919 0.52 +0.8
327,716 + BACOVA_04919 0.53 -1.2
327,717 - BACOVA_04919 0.53 +0.8
327,717 - BACOVA_04919 0.53 -1.0
327,717 - BACOVA_04919 0.53 -1.3
327,717 - BACOVA_04919 0.53 -0.9
327,720 + BACOVA_04919 0.53 +1.0
327,748 + BACOVA_04919 0.55 -0.6
327,814 - BACOVA_04919 0.58 -0.1
327,924 + BACOVA_04919 0.65 -0.3
327,960 - BACOVA_04919 0.67 -1.3
327,964 - BACOVA_04919 0.67 +0.4
327,964 - BACOVA_04919 0.67 -0.6
327,964 - BACOVA_04919 0.67 +0.4
328,015 - BACOVA_04919 0.70 -0.2
328,015 - BACOVA_04919 0.70 -1.0
328,081 - BACOVA_04919 0.73 +0.1
328,125 + BACOVA_04919 0.76 +0.7
328,126 - BACOVA_04919 0.76 +0.7
328,202 + BACOVA_04919 0.80 +0.6
328,212 + BACOVA_04919 0.81 +0.7
328,269 + BACOVA_04919 0.84 +0.0
328,286 + BACOVA_04919 0.85 +0.6
328,286 + BACOVA_04919 0.85 -1.6
328,286 + BACOVA_04919 0.85 -0.8
328,286 + BACOVA_04919 0.85 -1.3
328,287 - BACOVA_04919 0.85 +0.8
328,287 - BACOVA_04919 0.85 -0.9
328,287 - BACOVA_04919 0.85 -0.2
328,404 - +0.1
328,500 + -1.0
328,504 - +0.0
328,504 - -1.2
328,523 + +1.0
328,524 - -0.0
328,524 - +0.0
328,526 - +0.3
328,527 + +0.5
328,527 + +0.3
328,527 + -0.7
328,528 - -0.6
328,561 + -0.6
328,574 - -0.5
328,577 - -1.4
328,585 - +0.0
328,592 + +0.0
328,593 - +0.6
328,617 + +0.3
328,618 - -0.2
328,618 - -0.6
328,663 + +1.3
328,739 - -0.3
328,760 + +0.1
328,763 - -0.6
328,804 + -2.0
328,861 + BACOVA_04920 0.11 +0.9
328,862 - BACOVA_04920 0.11 -0.1
328,980 - BACOVA_04920 0.16 +0.1
329,029 - BACOVA_04920 0.18 +0.5
329,070 - BACOVA_04920 0.20 -0.7
329,143 - BACOVA_04920 0.23 -0.9
329,203 + BACOVA_04920 0.25 +1.0
329,203 + BACOVA_04920 0.25 +2.3
329,242 - BACOVA_04920 0.27 +1.0
329,242 - BACOVA_04920 0.27 +0.4
329,260 - BACOVA_04920 0.28 -0.1
329,273 + BACOVA_04920 0.28 +0.7
329,274 - BACOVA_04920 0.28 +0.6
329,274 - BACOVA_04920 0.28 +0.1
329,276 - BACOVA_04920 0.28 +0.5
329,276 - BACOVA_04920 0.28 -0.9
329,276 - BACOVA_04920 0.28 +0.4
329,287 + BACOVA_04920 0.29 +1.0
329,296 + BACOVA_04920 0.29 +0.1
329,296 + BACOVA_04920 0.29 +1.0
329,306 - BACOVA_04920 0.30 -1.1
329,339 + BACOVA_04920 0.31 -0.1
329,349 + BACOVA_04920 0.31 +2.6
329,389 + BACOVA_04920 0.33 +1.0
329,406 + BACOVA_04920 0.34 -1.1
329,444 - BACOVA_04920 0.35 +0.1
329,455 - BACOVA_04920 0.36 -0.1
329,472 + BACOVA_04920 0.37 -1.5
329,472 + BACOVA_04920 0.37 +0.4
329,495 - BACOVA_04920 0.38 +0.6
329,503 + BACOVA_04920 0.38 -0.5
329,527 + BACOVA_04920 0.39 -0.4
329,533 + BACOVA_04920 0.39 -0.4
329,533 + BACOVA_04920 0.39 +2.6
329,534 - BACOVA_04920 0.39 -1.3
329,534 - BACOVA_04920 0.39 -0.0
329,534 - BACOVA_04920 0.39 +0.2
329,534 - BACOVA_04920 0.39 -0.6
329,536 - BACOVA_04920 0.39 +0.1
329,600 + BACOVA_04920 0.42 +0.2
329,601 - BACOVA_04920 0.42 -1.3
329,626 + BACOVA_04920 0.43 -0.2
329,717 - BACOVA_04920 0.47 +1.6
329,742 - BACOVA_04920 0.48 +1.9
329,754 - BACOVA_04920 0.48 -0.8
329,758 + BACOVA_04920 0.49 -0.1
329,767 + BACOVA_04920 0.49 -0.6
329,814 - BACOVA_04920 0.51 -0.5
329,848 + BACOVA_04920 0.52 +0.1
329,948 + BACOVA_04920 0.57 -0.7
329,948 + BACOVA_04920 0.57 +0.4
329,952 + BACOVA_04920 0.57 +0.3
329,975 - BACOVA_04920 0.58 -0.5
329,975 - BACOVA_04920 0.58 -0.1
329,975 - BACOVA_04920 0.58 -0.3
329,975 - BACOVA_04920 0.58 +0.4
329,978 - BACOVA_04920 0.58 -1.6
330,022 - BACOVA_04920 0.60 +0.2
330,046 + BACOVA_04920 0.61 +0.3
330,061 + BACOVA_04920 0.61 -2.2
330,062 - BACOVA_04920 0.61 +0.4
330,073 + BACOVA_04920 0.62 -1.2
330,106 + BACOVA_04920 0.63 -0.2
330,106 + BACOVA_04920 0.63 -1.2
330,122 - BACOVA_04920 0.64 +0.0
330,142 - BACOVA_04920 0.65 +1.0
330,142 - BACOVA_04920 0.65 +0.7
330,147 + BACOVA_04920 0.65 -1.0
330,252 - BACOVA_04920 0.69 +0.5
330,252 - BACOVA_04920 0.69 +0.0
330,296 + BACOVA_04920 0.71 +0.6
330,297 - BACOVA_04920 0.71 -0.2
330,323 + BACOVA_04920 0.72 -0.6
330,323 + BACOVA_04920 0.72 +0.3
330,402 - BACOVA_04920 0.76 +0.3
330,416 + BACOVA_04920 0.76 -0.2
330,417 - BACOVA_04920 0.76 +0.1
330,417 - BACOVA_04920 0.76 -1.8
330,423 + BACOVA_04920 0.76 -0.6
330,427 + BACOVA_04920 0.77 +1.0
330,427 + BACOVA_04920 0.77 +0.4
330,428 - BACOVA_04920 0.77 +0.1
330,537 - BACOVA_04920 0.81 +0.1
330,581 + BACOVA_04920 0.83 +0.0
330,592 - BACOVA_04920 0.84 -0.3
330,600 - BACOVA_04920 0.84 -1.6
330,630 + BACOVA_04920 0.85 -0.5
330,631 - BACOVA_04920 0.85 +1.2
330,655 - BACOVA_04920 0.86 +0.3
330,655 - BACOVA_04920 0.86 +2.0
330,665 - BACOVA_04920 0.87 +0.4
330,668 + BACOVA_04920 0.87 -0.8
330,668 + BACOVA_04920 0.87 +0.4
330,674 + BACOVA_04920 0.87 -0.3
330,674 + BACOVA_04920 0.87 -0.3
330,675 - BACOVA_04920 0.87 -0.2
330,675 - BACOVA_04920 0.87 +1.4
330,758 - -2.0
330,940 + -0.6
330,940 + -0.6
330,940 + -0.4
330,941 - +1.0
330,944 + +0.2
330,945 - +1.3
330,969 + +0.4
330,970 - +0.3
330,983 + -1.6
331,011 - -0.3
331,023 + +0.5
331,041 - -0.2
331,041 - +0.7
331,046 + -0.3
331,052 + -0.1
331,053 - -0.3
331,053 - +0.5
331,053 - -0.7
331,056 + +0.1
331,057 - -1.2
331,098 + +0.0
331,172 + -0.4
331,173 - +1.4
331,198 - +0.5
331,245 - -0.9
331,245 - -0.4
331,253 - -0.4
331,257 - +0.3
331,257 - -0.6
331,260 + +1.2
331,306 - +1.8
331,361 - BACOVA_04921 0.10 +0.3
331,396 - BACOVA_04921 0.11 -1.4
331,419 - BACOVA_04921 0.12 +0.5
331,430 + BACOVA_04921 0.13 -0.2
331,430 + BACOVA_04921 0.13 -0.6
331,465 - BACOVA_04921 0.14 -2.2
331,570 - BACOVA_04921 0.17 +0.8
331,593 - BACOVA_04921 0.18 +0.2
331,665 + BACOVA_04921 0.20 -0.6
331,665 + BACOVA_04921 0.20 -2.0
331,665 + BACOVA_04921 0.20 -1.6
331,669 + BACOVA_04921 0.20 +0.6
331,753 + BACOVA_04921 0.23 +0.0
331,811 + BACOVA_04921 0.24 +0.2
331,812 - BACOVA_04921 0.24 +0.6
331,812 - BACOVA_04921 0.24 +0.0
331,848 + BACOVA_04921 0.26 -0.1
331,848 + BACOVA_04921 0.26 +2.6
331,849 - BACOVA_04921 0.26 -0.3
331,866 + BACOVA_04921 0.26 +1.4
331,869 + BACOVA_04921 0.26 +0.3
331,873 + BACOVA_04921 0.26 +0.0
331,873 + BACOVA_04921 0.26 -1.2
331,894 + BACOVA_04921 0.27 -1.0
331,964 - BACOVA_04921 0.29 +0.8
331,964 - BACOVA_04921 0.29 -0.6
331,967 + BACOVA_04921 0.29 -0.2
331,974 + BACOVA_04921 0.29 -0.2

Or see this region's nucleotide sequence