Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04550

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04549 and BACOVA_04550 are separated by 11 nucleotidesBACOVA_04550 and BACOVA_04551 are separated by 41 nucleotides BACOVA_04549: BACOVA_04549 - hypothetical protein, at 497,234 to 498,244 _04549 BACOVA_04550: BACOVA_04550 - hypothetical protein, at 498,256 to 498,372 _04550 BACOVA_04551: BACOVA_04551 - thioredoxin, at 498,414 to 499,379 _04551 Position (kb) 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 497.349 kb on - strand, within BACOVA_04549at 497.383 kb on - strand, within BACOVA_04549at 497.388 kb on + strand, within BACOVA_04549at 497.395 kb on - strand, within BACOVA_04549at 497.403 kb on + strand, within BACOVA_04549at 497.420 kb on - strand, within BACOVA_04549at 497.453 kb on - strand, within BACOVA_04549at 497.458 kb on + strand, within BACOVA_04549at 497.459 kb on - strand, within BACOVA_04549at 497.459 kb on - strand, within BACOVA_04549at 497.460 kb on + strand, within BACOVA_04549at 497.525 kb on - strand, within BACOVA_04549at 497.529 kb on + strand, within BACOVA_04549at 497.529 kb on + strand, within BACOVA_04549at 497.533 kb on + strand, within BACOVA_04549at 497.534 kb on - strand, within BACOVA_04549at 497.534 kb on - strand, within BACOVA_04549at 497.633 kb on - strand, within BACOVA_04549at 497.636 kb on - strand, within BACOVA_04549at 497.642 kb on - strand, within BACOVA_04549at 497.688 kb on + strand, within BACOVA_04549at 497.721 kb on + strand, within BACOVA_04549at 497.721 kb on + strand, within BACOVA_04549at 497.721 kb on + strand, within BACOVA_04549at 497.759 kb on + strand, within BACOVA_04549at 497.760 kb on - strand, within BACOVA_04549at 497.788 kb on + strand, within BACOVA_04549at 497.788 kb on + strand, within BACOVA_04549at 497.798 kb on - strand, within BACOVA_04549at 497.798 kb on - strand, within BACOVA_04549at 497.798 kb on - strand, within BACOVA_04549at 497.817 kb on + strand, within BACOVA_04549at 497.817 kb on + strand, within BACOVA_04549at 497.845 kb on + strand, within BACOVA_04549at 497.845 kb on + strand, within BACOVA_04549at 497.875 kb on - strand, within BACOVA_04549at 497.890 kb on + strand, within BACOVA_04549at 497.891 kb on - strand, within BACOVA_04549at 497.891 kb on - strand, within BACOVA_04549at 497.891 kb on - strand, within BACOVA_04549at 497.892 kb on + strand, within BACOVA_04549at 497.893 kb on - strand, within BACOVA_04549at 497.908 kb on + strand, within BACOVA_04549at 497.908 kb on + strand, within BACOVA_04549at 497.909 kb on - strand, within BACOVA_04549at 497.912 kb on - strand, within BACOVA_04549at 497.922 kb on + strand, within BACOVA_04549at 497.923 kb on - strand, within BACOVA_04549at 497.926 kb on + strand, within BACOVA_04549at 497.926 kb on + strand, within BACOVA_04549at 497.927 kb on - strand, within BACOVA_04549at 497.928 kb on + strand, within BACOVA_04549at 497.931 kb on + strand, within BACOVA_04549at 497.956 kb on - strand, within BACOVA_04549at 497.968 kb on + strand, within BACOVA_04549at 497.984 kb on - strand, within BACOVA_04549at 497.990 kb on - strand, within BACOVA_04549at 497.991 kb on + strand, within BACOVA_04549at 498.035 kb on - strand, within BACOVA_04549at 498.036 kb on + strand, within BACOVA_04549at 498.154 kb on - strandat 498.190 kb on + strandat 498.191 kb on - strandat 498.201 kb on - strandat 498.205 kb on + strandat 498.205 kb on + strandat 498.238 kb on + strandat 498.239 kb on - strandat 498.345 kb on + strand, within BACOVA_04550at 498.353 kb on + strand, within BACOVA_04550at 498.354 kb on - strand, within BACOVA_04550at 498.387 kb on - strandat 498.446 kb on + strandat 498.528 kb on - strand, within BACOVA_04551at 498.531 kb on + strand, within BACOVA_04551at 498.531 kb on + strand, within BACOVA_04551at 498.531 kb on + strand, within BACOVA_04551at 498.532 kb on - strand, within BACOVA_04551at 498.532 kb on - strand, within BACOVA_04551at 498.534 kb on + strand, within BACOVA_04551at 498.535 kb on - strand, within BACOVA_04551at 498.535 kb on - strand, within BACOVA_04551at 498.535 kb on - strand, within BACOVA_04551at 498.566 kb on - strand, within BACOVA_04551at 498.569 kb on + strand, within BACOVA_04551at 498.569 kb on + strand, within BACOVA_04551at 498.577 kb on - strand, within BACOVA_04551at 498.611 kb on + strand, within BACOVA_04551at 498.611 kb on + strand, within BACOVA_04551at 498.612 kb on - strand, within BACOVA_04551at 498.612 kb on - strand, within BACOVA_04551at 498.625 kb on + strand, within BACOVA_04551at 498.626 kb on - strand, within BACOVA_04551at 498.626 kb on - strand, within BACOVA_04551at 498.630 kb on - strand, within BACOVA_04551at 498.648 kb on + strand, within BACOVA_04551at 498.649 kb on - strand, within BACOVA_04551at 498.666 kb on - strand, within BACOVA_04551at 498.677 kb on + strand, within BACOVA_04551at 498.700 kb on + strand, within BACOVA_04551at 498.739 kb on - strand, within BACOVA_04551at 498.761 kb on + strand, within BACOVA_04551at 498.850 kb on + strand, within BACOVA_04551at 498.917 kb on + strand, within BACOVA_04551at 498.950 kb on + strand, within BACOVA_04551at 498.951 kb on - strand, within BACOVA_04551at 498.951 kb on - strand, within BACOVA_04551at 499.070 kb on + strand, within BACOVA_04551at 499.073 kb on + strand, within BACOVA_04551at 499.073 kb on + strand, within BACOVA_04551at 499.074 kb on - strand, within BACOVA_04551at 499.086 kb on - strand, within BACOVA_04551at 499.097 kb on + strand, within BACOVA_04551at 499.097 kb on + strand, within BACOVA_04551at 499.190 kb on - strand, within BACOVA_04551at 499.247 kb on + strand, within BACOVA_04551at 499.247 kb on + strand, within BACOVA_04551at 499.248 kb on - strand, within BACOVA_04551at 499.248 kb on - strand, within BACOVA_04551at 499.251 kb on - strand, within BACOVA_04551at 499.270 kb on - strand, within BACOVA_04551at 499.326 kb on + strandat 499.327 kb on - strandat 499.334 kb on + strandat 499.357 kb on - strandat 499.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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497,349 - BACOVA_04549 0.11 -0.3
497,383 - BACOVA_04549 0.15 +1.5
497,388 + BACOVA_04549 0.15 -0.1
497,395 - BACOVA_04549 0.16 +1.6
497,403 + BACOVA_04549 0.17 -0.7
497,420 - BACOVA_04549 0.18 +0.7
497,453 - BACOVA_04549 0.22 +0.5
497,458 + BACOVA_04549 0.22 +0.5
497,459 - BACOVA_04549 0.22 +0.2
497,459 - BACOVA_04549 0.22 +0.2
497,460 + BACOVA_04549 0.22 -1.0
497,525 - BACOVA_04549 0.29 +0.3
497,529 + BACOVA_04549 0.29 -0.1
497,529 + BACOVA_04549 0.29 +0.2
497,533 + BACOVA_04549 0.30 +0.4
497,534 - BACOVA_04549 0.30 +0.3
497,534 - BACOVA_04549 0.30 -0.7
497,633 - BACOVA_04549 0.39 +1.0
497,636 - BACOVA_04549 0.40 -0.1
497,642 - BACOVA_04549 0.40 +0.0
497,688 + BACOVA_04549 0.45 +0.8
497,721 + BACOVA_04549 0.48 +0.6
497,721 + BACOVA_04549 0.48 -0.0
497,721 + BACOVA_04549 0.48 +0.8
497,759 + BACOVA_04549 0.52 -0.6
497,760 - BACOVA_04549 0.52 +1.2
497,788 + BACOVA_04549 0.55 -0.2
497,788 + BACOVA_04549 0.55 +2.6
497,798 - BACOVA_04549 0.56 +0.0
497,798 - BACOVA_04549 0.56 -0.1
497,798 - BACOVA_04549 0.56 +0.1
497,817 + BACOVA_04549 0.58 -2.0
497,817 + BACOVA_04549 0.58 +0.2
497,845 + BACOVA_04549 0.60 -1.5
497,845 + BACOVA_04549 0.60 -0.3
497,875 - BACOVA_04549 0.63 -2.8
497,890 + BACOVA_04549 0.65 +0.3
497,891 - BACOVA_04549 0.65 +0.1
497,891 - BACOVA_04549 0.65 +0.0
497,891 - BACOVA_04549 0.65 +0.3
497,892 + BACOVA_04549 0.65 -0.1
497,893 - BACOVA_04549 0.65 -0.8
497,908 + BACOVA_04549 0.67 +0.5
497,908 + BACOVA_04549 0.67 -0.2
497,909 - BACOVA_04549 0.67 +0.3
497,912 - BACOVA_04549 0.67 -0.1
497,922 + BACOVA_04549 0.68 -0.3
497,923 - BACOVA_04549 0.68 -1.8
497,926 + BACOVA_04549 0.68 -0.3
497,926 + BACOVA_04549 0.68 +1.6
497,927 - BACOVA_04549 0.69 +0.3
497,928 + BACOVA_04549 0.69 +0.2
497,931 + BACOVA_04549 0.69 +1.0
497,956 - BACOVA_04549 0.71 +0.0
497,968 + BACOVA_04549 0.73 -1.3
497,984 - BACOVA_04549 0.74 -0.3
497,990 - BACOVA_04549 0.75 -0.2
497,991 + BACOVA_04549 0.75 -0.4
498,035 - BACOVA_04549 0.79 +1.0
498,036 + BACOVA_04549 0.79 +0.6
498,154 - +0.8
498,190 + -0.8
498,191 - +0.4
498,201 - +0.8
498,205 + +0.5
498,205 + -0.2
498,238 + +0.4
498,239 - -1.3
498,345 + BACOVA_04550 0.76 -1.0
498,353 + BACOVA_04550 0.83 -0.5
498,354 - BACOVA_04550 0.84 +0.0
498,387 - +0.6
498,446 + +0.5
498,528 - BACOVA_04551 0.12 -0.0
498,531 + BACOVA_04551 0.12 -0.5
498,531 + BACOVA_04551 0.12 +1.0
498,531 + BACOVA_04551 0.12 +0.7
498,532 - BACOVA_04551 0.12 -1.0
498,532 - BACOVA_04551 0.12 +0.6
498,534 + BACOVA_04551 0.12 -0.3
498,535 - BACOVA_04551 0.13 +0.7
498,535 - BACOVA_04551 0.13 +1.0
498,535 - BACOVA_04551 0.13 -0.5
498,566 - BACOVA_04551 0.16 -0.5
498,569 + BACOVA_04551 0.16 +0.5
498,569 + BACOVA_04551 0.16 -0.4
498,577 - BACOVA_04551 0.17 -0.8
498,611 + BACOVA_04551 0.20 -0.8
498,611 + BACOVA_04551 0.20 -0.4
498,612 - BACOVA_04551 0.20 -1.0
498,612 - BACOVA_04551 0.20 -1.3
498,625 + BACOVA_04551 0.22 -1.8
498,626 - BACOVA_04551 0.22 +1.0
498,626 - BACOVA_04551 0.22 -0.4
498,630 - BACOVA_04551 0.22 +0.4
498,648 + BACOVA_04551 0.24 +0.7
498,649 - BACOVA_04551 0.24 -0.4
498,666 - BACOVA_04551 0.26 +0.6
498,677 + BACOVA_04551 0.27 +1.8
498,700 + BACOVA_04551 0.30 +0.2
498,739 - BACOVA_04551 0.34 +0.1
498,761 + BACOVA_04551 0.36 +1.1
498,850 + BACOVA_04551 0.45 -1.2
498,917 + BACOVA_04551 0.52 -0.2
498,950 + BACOVA_04551 0.55 -0.3
498,951 - BACOVA_04551 0.56 +1.0
498,951 - BACOVA_04551 0.56 +0.8
499,070 + BACOVA_04551 0.68 -0.1
499,073 + BACOVA_04551 0.68 -0.3
499,073 + BACOVA_04551 0.68 +0.4
499,074 - BACOVA_04551 0.68 +0.0
499,086 - BACOVA_04551 0.70 -1.0
499,097 + BACOVA_04551 0.71 +0.5
499,097 + BACOVA_04551 0.71 +1.2
499,190 - BACOVA_04551 0.80 +0.2
499,247 + BACOVA_04551 0.86 -0.5
499,247 + BACOVA_04551 0.86 +0.2
499,248 - BACOVA_04551 0.86 +0.0
499,248 - BACOVA_04551 0.86 +1.0
499,251 - BACOVA_04551 0.87 +0.3
499,270 - BACOVA_04551 0.89 +1.3
499,326 + +1.0
499,327 - +0.7
499,334 + -1.5
499,357 - +0.5
499,357 - -0.7

Or see this region's nucleotide sequence