Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03445 and BACOVA_03446 are separated by 25 nucleotides BACOVA_03446 and BACOVA_03447 are separated by 21 nucleotides BACOVA_03447 and BACOVA_03448 are separated by 361 nucleotides
BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332
_03445
BACOVA_03446: BACOVA_03446 - hypothetical protein, at 186,358 to 188,361
_03446
BACOVA_03447: BACOVA_03447 - hypothetical protein, at 188,383 to 188,802
_03447
BACOVA_03448: BACOVA_03448 - hypothetical protein, at 189,164 to 189,289
_03448
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.396 kb on + strand, within BACOVA_03445 at 185.410 kb on - strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.455 kb on - strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.538 kb on - strand, within BACOVA_03445 at 185.643 kb on + strand, within BACOVA_03445 at 185.658 kb on + strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.719 kb on - strand, within BACOVA_03445 at 185.763 kb on + strand, within BACOVA_03445 at 185.815 kb on - strand, within BACOVA_03445 at 185.816 kb on + strand, within BACOVA_03445 at 185.817 kb on - strand, within BACOVA_03445 at 185.826 kb on - strand, within BACOVA_03445 at 185.870 kb on + strand, within BACOVA_03445 at 185.914 kb on + strand, within BACOVA_03445 at 186.101 kb on + strand, within BACOVA_03445 at 186.102 kb on - strand, within BACOVA_03445 at 186.109 kb on - strand, within BACOVA_03445 at 186.148 kb on + strand, within BACOVA_03445 at 186.149 kb on - strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.152 kb on + strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.153 kb on - strand, within BACOVA_03445 at 186.160 kb on - strand, within BACOVA_03445 at 186.221 kb on + strand at 186.336 kb on - strand at 186.358 kb on - strand at 186.378 kb on - strand at 186.455 kb on + strand at 186.456 kb on - strand at 186.456 kb on - strand at 186.474 kb on + strand at 186.475 kb on - strand at 186.488 kb on + strand at 186.541 kb on - strand at 186.577 kb on - strand, within BACOVA_03446 at 186.579 kb on + strand, within BACOVA_03446 at 186.604 kb on + strand, within BACOVA_03446 at 186.654 kb on - strand, within BACOVA_03446 at 186.680 kb on + strand, within BACOVA_03446 at 186.681 kb on - strand, within BACOVA_03446 at 186.697 kb on - strand, within BACOVA_03446 at 186.733 kb on - strand, within BACOVA_03446 at 186.754 kb on - strand, within BACOVA_03446 at 186.857 kb on + strand, within BACOVA_03446 at 186.864 kb on + strand, within BACOVA_03446 at 186.869 kb on + strand, within BACOVA_03446 at 186.870 kb on - strand, within BACOVA_03446 at 186.874 kb on - strand, within BACOVA_03446 at 186.910 kb on + strand, within BACOVA_03446 at 186.912 kb on + strand, within BACOVA_03446 at 186.912 kb on + strand, within BACOVA_03446 at 186.913 kb on - strand, within BACOVA_03446 at 186.915 kb on + strand, within BACOVA_03446 at 186.916 kb on - strand, within BACOVA_03446 at 186.921 kb on + strand, within BACOVA_03446 at 187.060 kb on + strand, within BACOVA_03446 at 187.061 kb on - strand, within BACOVA_03446 at 187.134 kb on + strand, within BACOVA_03446 at 187.186 kb on + strand, within BACOVA_03446 at 187.215 kb on + strand, within BACOVA_03446 at 187.257 kb on + strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.258 kb on - strand, within BACOVA_03446 at 187.331 kb on - strand, within BACOVA_03446 at 187.359 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.578 kb on + strand, within BACOVA_03446 at 187.579 kb on - strand, within BACOVA_03446 at 187.584 kb on + strand, within BACOVA_03446 at 187.633 kb on + strand, within BACOVA_03446 at 187.726 kb on + strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.787 kb on - strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.815 kb on + strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.945 kb on + strand, within BACOVA_03446 at 187.946 kb on - strand, within BACOVA_03446 at 187.947 kb on + strand, within BACOVA_03446 at 187.976 kb on + strand, within BACOVA_03446 at 187.987 kb on - strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.022 kb on + strand, within BACOVA_03446 at 188.082 kb on + strand, within BACOVA_03446 at 188.089 kb on - strand, within BACOVA_03446 at 188.118 kb on + strand, within BACOVA_03446 at 188.137 kb on + strand, within BACOVA_03446 at 188.165 kb on - strand at 188.165 kb on - strand at 188.170 kb on - strand at 188.170 kb on - strand at 188.184 kb on + strand at 188.259 kb on + strand at 188.360 kb on - strand at 188.368 kb on - strand at 188.368 kb on - strand at 188.378 kb on + strand at 188.378 kb on + strand at 188.379 kb on - strand at 188.379 kb on - strand at 188.382 kb on - strand at 188.470 kb on + strand, within BACOVA_03447 at 188.471 kb on - strand, within BACOVA_03447 at 188.512 kb on - strand, within BACOVA_03447 at 188.515 kb on + strand, within BACOVA_03447 at 188.527 kb on + strand, within BACOVA_03447 at 188.575 kb on + strand, within BACOVA_03447 at 188.576 kb on - strand, within BACOVA_03447 at 188.577 kb on + strand, within BACOVA_03447 at 188.583 kb on + strand, within BACOVA_03447 at 188.627 kb on - strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.662 kb on - strand, within BACOVA_03447 at 188.672 kb on + strand, within BACOVA_03447 at 188.712 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.719 kb on - strand, within BACOVA_03447 at 188.739 kb on - strand, within BACOVA_03447 at 188.743 kb on - strand, within BACOVA_03447 at 188.753 kb on + strand, within BACOVA_03447 at 188.754 kb on - strand, within BACOVA_03447 at 188.800 kb on + strand at 188.800 kb on + strand at 188.801 kb on - strand at 188.809 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.870 kb on + strand at 188.875 kb on + strand at 188.876 kb on - strand at 188.894 kb on - strand at 188.894 kb on - strand at 188.917 kb on - strand at 188.943 kb on + strand at 188.944 kb on - strand at 188.975 kb on + strand at 188.976 kb on - strand at 188.976 kb on - strand at 188.978 kb on - strand at 188.996 kb on - strand at 189.015 kb on + strand at 189.043 kb on + strand at 189.133 kb on + strand at 189.137 kb on + strand at 189.138 kb on - strand at 189.138 kb on - strand at 189.161 kb on + strand at 189.161 kb on + strand at 189.175 kb on + strand at 189.177 kb on + strand, within BACOVA_03448 at 189.177 kb on + strand, within BACOVA_03448 at 189.181 kb on + strand, within BACOVA_03448 at 189.192 kb on + strand, within BACOVA_03448 at 189.233 kb on - strand, within BACOVA_03448 at 189.276 kb on + strand, within BACOVA_03448 at 189.277 kb on - strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.290 kb on + strand at 189.290 kb on + strand at 189.291 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 185,396 + BACOVA_03445 0.32 +0.4 185,410 - BACOVA_03445 0.33 +0.7 185,446 + BACOVA_03445 0.36 +0.7 185,446 + BACOVA_03445 0.36 +0.5 185,455 - BACOVA_03445 0.37 -0.6 185,517 + BACOVA_03445 0.41 -0.4 185,517 + BACOVA_03445 0.41 +1.1 185,538 - BACOVA_03445 0.43 +0.1 185,643 + BACOVA_03445 0.50 +0.5 185,658 + BACOVA_03445 0.51 +0.5 185,661 - BACOVA_03445 0.51 +0.4 185,661 - BACOVA_03445 0.51 +1.1 185,718 + BACOVA_03445 0.56 +0.5 185,718 + BACOVA_03445 0.56 +0.5 185,718 + BACOVA_03445 0.56 -0.7 185,719 - BACOVA_03445 0.56 +0.1 185,763 + BACOVA_03445 0.59 -0.0 185,815 - BACOVA_03445 0.63 -0.2 185,816 + BACOVA_03445 0.63 +1.1 185,817 - BACOVA_03445 0.63 -0.0 185,826 - BACOVA_03445 0.63 +0.7 185,870 + BACOVA_03445 0.67 -0.9 185,914 + BACOVA_03445 0.70 -1.7 186,101 + BACOVA_03445 0.83 +0.8 186,102 - BACOVA_03445 0.83 +0.5 186,109 - BACOVA_03445 0.84 +0.2 186,148 + BACOVA_03445 0.87 +1.6 186,149 - BACOVA_03445 0.87 +0.1 186,152 + BACOVA_03445 0.87 +1.1 186,152 + BACOVA_03445 0.87 -0.3 186,152 + BACOVA_03445 0.87 +0.1 186,153 - BACOVA_03445 0.87 -0.2 186,153 - BACOVA_03445 0.87 +0.1 186,153 - BACOVA_03445 0.87 -0.5 186,153 - BACOVA_03445 0.87 +0.3 186,153 - BACOVA_03445 0.87 -1.0 186,160 - BACOVA_03445 0.87 +0.9 186,221 + -1.4 186,336 - +0.1 186,358 - -0.2 186,378 - -0.2 186,455 + -0.7 186,456 - -0.6 186,456 - -0.1 186,474 + -0.3 186,475 - -0.0 186,488 + -0.1 186,541 - -0.6 186,577 - BACOVA_03446 0.11 +0.3 186,579 + BACOVA_03446 0.11 +0.3 186,604 + BACOVA_03446 0.12 +0.1 186,654 - BACOVA_03446 0.15 +0.3 186,680 + BACOVA_03446 0.16 -0.7 186,681 - BACOVA_03446 0.16 -0.5 186,697 - BACOVA_03446 0.17 +0.1 186,733 - BACOVA_03446 0.19 +0.1 186,754 - BACOVA_03446 0.20 -0.7 186,857 + BACOVA_03446 0.25 +0.1 186,864 + BACOVA_03446 0.25 -0.4 186,869 + BACOVA_03446 0.25 +0.4 186,870 - BACOVA_03446 0.26 +0.0 186,874 - BACOVA_03446 0.26 -0.6 186,910 + BACOVA_03446 0.28 +0.7 186,912 + BACOVA_03446 0.28 -0.1 186,912 + BACOVA_03446 0.28 +0.2 186,913 - BACOVA_03446 0.28 -0.6 186,915 + BACOVA_03446 0.28 +0.3 186,916 - BACOVA_03446 0.28 +0.7 186,921 + BACOVA_03446 0.28 -0.1 187,060 + BACOVA_03446 0.35 -0.1 187,061 - BACOVA_03446 0.35 +1.2 187,134 + BACOVA_03446 0.39 +0.8 187,186 + BACOVA_03446 0.41 +0.6 187,215 + BACOVA_03446 0.43 -0.5 187,257 + BACOVA_03446 0.45 -0.5 187,258 - BACOVA_03446 0.45 +0.9 187,258 - BACOVA_03446 0.45 -1.5 187,258 - BACOVA_03446 0.45 +0.3 187,331 - BACOVA_03446 0.49 +0.9 187,359 + BACOVA_03446 0.50 +0.3 187,401 + BACOVA_03446 0.52 -0.8 187,401 + BACOVA_03446 0.52 +0.3 187,401 + BACOVA_03446 0.52 +0.5 187,401 + BACOVA_03446 0.52 -0.9 187,402 - BACOVA_03446 0.52 +1.2 187,402 - BACOVA_03446 0.52 +0.3 187,402 - BACOVA_03446 0.52 +0.0 187,402 - BACOVA_03446 0.52 +1.1 187,541 + BACOVA_03446 0.59 +0.1 187,541 + BACOVA_03446 0.59 +0.3 187,542 - BACOVA_03446 0.59 -0.1 187,542 - BACOVA_03446 0.59 +0.2 187,578 + BACOVA_03446 0.61 -0.2 187,579 - BACOVA_03446 0.61 +0.3 187,584 + BACOVA_03446 0.61 -0.4 187,633 + BACOVA_03446 0.64 +2.1 187,726 + BACOVA_03446 0.68 +0.5 187,727 - BACOVA_03446 0.68 -0.3 187,727 - BACOVA_03446 0.68 -0.7 187,727 - BACOVA_03446 0.68 -0.2 187,727 - BACOVA_03446 0.68 +0.2 187,727 - BACOVA_03446 0.68 -0.1 187,755 + BACOVA_03446 0.70 +1.1 187,755 + BACOVA_03446 0.70 +0.8 187,787 - BACOVA_03446 0.71 +0.4 187,803 + BACOVA_03446 0.72 -0.1 187,803 + BACOVA_03446 0.72 +0.2 187,803 + BACOVA_03446 0.72 +0.3 187,815 + BACOVA_03446 0.73 +0.5 187,816 - BACOVA_03446 0.73 -0.9 187,816 - BACOVA_03446 0.73 +0.8 187,858 + BACOVA_03446 0.75 +1.0 187,858 + BACOVA_03446 0.75 +0.5 187,918 - BACOVA_03446 0.78 -0.8 187,918 - BACOVA_03446 0.78 -1.3 187,937 + BACOVA_03446 0.79 -0.8 187,937 + BACOVA_03446 0.79 -2.3 187,945 + BACOVA_03446 0.79 +0.2 187,946 - BACOVA_03446 0.79 +1.1 187,947 + BACOVA_03446 0.79 -1.2 187,976 + BACOVA_03446 0.81 +0.4 187,987 - BACOVA_03446 0.81 +2.1 188,016 + BACOVA_03446 0.83 +0.1 188,016 + BACOVA_03446 0.83 +0.7 188,022 + BACOVA_03446 0.83 -0.5 188,082 + BACOVA_03446 0.86 +0.3 188,089 - BACOVA_03446 0.86 -0.2 188,118 + BACOVA_03446 0.88 +0.3 188,137 + BACOVA_03446 0.89 -0.5 188,165 - -0.9 188,165 - +0.0 188,170 - -0.6 188,170 - -0.3 188,184 + -0.4 188,259 + +1.7 188,360 - +1.0 188,368 - -1.2 188,368 - +1.1 188,378 + -0.1 188,378 + -0.4 188,379 - +1.7 188,379 - -0.5 188,382 - +0.2 188,470 + BACOVA_03447 0.21 +0.4 188,471 - BACOVA_03447 0.21 +1.1 188,512 - BACOVA_03447 0.31 -0.4 188,515 + BACOVA_03447 0.31 -0.1 188,527 + BACOVA_03447 0.34 +0.5 188,575 + BACOVA_03447 0.46 +0.6 188,576 - BACOVA_03447 0.46 -0.1 188,577 + BACOVA_03447 0.46 -0.6 188,583 + BACOVA_03447 0.48 +1.1 188,627 - BACOVA_03447 0.58 -0.2 188,661 + BACOVA_03447 0.66 +0.3 188,661 + BACOVA_03447 0.66 +0.3 188,661 + BACOVA_03447 0.66 -0.0 188,662 - BACOVA_03447 0.66 +0.3 188,672 + BACOVA_03447 0.69 +1.1 188,712 + BACOVA_03447 0.78 +1.1 188,714 + BACOVA_03447 0.79 -0.6 188,714 + BACOVA_03447 0.79 +1.0 188,714 + BACOVA_03447 0.79 +1.2 188,715 - BACOVA_03447 0.79 +0.1 188,715 - BACOVA_03447 0.79 -0.2 188,718 + BACOVA_03447 0.80 +0.1 188,718 + BACOVA_03447 0.80 -0.8 188,718 + BACOVA_03447 0.80 +0.1 188,719 - BACOVA_03447 0.80 +0.2 188,739 - BACOVA_03447 0.85 +0.3 188,743 - BACOVA_03447 0.86 -0.3 188,753 + BACOVA_03447 0.88 +0.5 188,754 - BACOVA_03447 0.88 -0.4 188,800 + -0.1 188,800 + +1.1 188,801 - +0.2 188,809 - +0.9 188,842 - -1.2 188,842 - -0.1 188,842 - +0.4 188,842 - +0.9 188,870 + +0.6 188,875 + +0.5 188,876 - +0.9 188,894 - +1.3 188,894 - -0.2 188,917 - -0.0 188,943 + -0.5 188,944 - -0.4 188,975 + -0.0 188,976 - +0.7 188,976 - +0.7 188,978 - -0.1 188,996 - +1.1 189,015 + -0.7 189,043 + +1.2 189,133 + -0.1 189,137 + +0.2 189,138 - -0.2 189,138 - +0.4 189,161 + +0.1 189,161 + +0.6 189,175 + +0.6 189,177 + BACOVA_03448 0.10 +0.4 189,177 + BACOVA_03448 0.10 -1.7 189,181 + BACOVA_03448 0.13 +0.1 189,192 + BACOVA_03448 0.22 +0.3 189,233 - BACOVA_03448 0.55 -1.4 189,276 + BACOVA_03448 0.89 +2.1 189,277 - +0.1 189,279 + +1.0 189,279 + -0.6 189,290 + +0.8 189,290 + -0.2 189,291 - +0.1 189,300 - +0.6 189,300 - -0.1 189,318 + -0.7
Or see this region's nucleotide sequence