Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03435 and BACOVA_03436 are separated by 7 nucleotides BACOVA_03436 and BACOVA_03437 are separated by 21 nucleotides
BACOVA_03435: BACOVA_03435 - hypothetical protein, at 163,170 to 165,086
_03435
BACOVA_03436: BACOVA_03436 - glycosyl hydrolase, family 43, at 165,094 to 166,482
_03436
BACOVA_03437: BACOVA_03437 - response regulator receiver domain protein, at 166,504 to 170,523
_03437
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 164.095 kb on - strand, within BACOVA_03435 at 164.142 kb on + strand, within BACOVA_03435 at 164.147 kb on + strand, within BACOVA_03435 at 164.147 kb on + strand, within BACOVA_03435 at 164.147 kb on + strand, within BACOVA_03435 at 164.211 kb on + strand, within BACOVA_03435 at 164.259 kb on + strand, within BACOVA_03435 at 164.260 kb on - strand, within BACOVA_03435 at 164.261 kb on + strand, within BACOVA_03435 at 164.261 kb on + strand, within BACOVA_03435 at 164.326 kb on - strand, within BACOVA_03435 at 164.328 kb on + strand, within BACOVA_03435 at 164.328 kb on + strand, within BACOVA_03435 at 164.328 kb on + strand, within BACOVA_03435 at 164.370 kb on - strand, within BACOVA_03435 at 164.370 kb on - strand, within BACOVA_03435 at 164.374 kb on - strand, within BACOVA_03435 at 164.413 kb on + strand, within BACOVA_03435 at 164.413 kb on + strand, within BACOVA_03435 at 164.413 kb on + strand, within BACOVA_03435 at 164.414 kb on - strand, within BACOVA_03435 at 164.414 kb on - strand, within BACOVA_03435 at 164.415 kb on + strand, within BACOVA_03435 at 164.416 kb on - strand, within BACOVA_03435 at 164.416 kb on - strand, within BACOVA_03435 at 164.461 kb on + strand, within BACOVA_03435 at 164.528 kb on + strand, within BACOVA_03435 at 164.528 kb on + strand, within BACOVA_03435 at 164.528 kb on + strand, within BACOVA_03435 at 164.531 kb on + strand, within BACOVA_03435 at 164.532 kb on - strand, within BACOVA_03435 at 164.652 kb on + strand, within BACOVA_03435 at 164.668 kb on - strand, within BACOVA_03435 at 164.702 kb on - strand, within BACOVA_03435 at 164.814 kb on + strand, within BACOVA_03435 at 164.815 kb on - strand, within BACOVA_03435 at 164.901 kb on - strand at 165.004 kb on - strand at 165.035 kb on + strand at 165.036 kb on - strand at 165.073 kb on + strand at 165.073 kb on + strand at 165.091 kb on - strand at 165.123 kb on + strand at 165.123 kb on + strand at 165.124 kb on - strand at 165.195 kb on + strand at 165.198 kb on + strand at 165.198 kb on + strand at 165.199 kb on - strand at 165.213 kb on + strand at 165.213 kb on + strand at 165.235 kb on + strand, within BACOVA_03436 at 165.235 kb on + strand, within BACOVA_03436 at 165.235 kb on + strand, within BACOVA_03436 at 165.236 kb on - strand, within BACOVA_03436 at 165.241 kb on + strand, within BACOVA_03436 at 165.242 kb on - strand, within BACOVA_03436 at 165.242 kb on - strand, within BACOVA_03436 at 165.244 kb on - strand, within BACOVA_03436 at 165.296 kb on + strand, within BACOVA_03436 at 165.296 kb on + strand, within BACOVA_03436 at 165.296 kb on + strand, within BACOVA_03436 at 165.299 kb on - strand, within BACOVA_03436 at 165.313 kb on - strand, within BACOVA_03436 at 165.412 kb on - strand, within BACOVA_03436 at 165.484 kb on - strand, within BACOVA_03436 at 165.484 kb on - strand, within BACOVA_03436 at 165.502 kb on - strand, within BACOVA_03436 at 165.544 kb on + strand, within BACOVA_03436 at 165.546 kb on + strand, within BACOVA_03436 at 165.547 kb on - strand, within BACOVA_03436 at 165.556 kb on - strand, within BACOVA_03436 at 165.586 kb on + strand, within BACOVA_03436 at 165.587 kb on - strand, within BACOVA_03436 at 165.587 kb on - strand, within BACOVA_03436 at 165.592 kb on + strand, within BACOVA_03436 at 165.593 kb on - strand, within BACOVA_03436 at 165.613 kb on + strand, within BACOVA_03436 at 165.613 kb on + strand, within BACOVA_03436 at 165.614 kb on - strand, within BACOVA_03436 at 165.614 kb on - strand, within BACOVA_03436 at 165.616 kb on + strand, within BACOVA_03436 at 165.616 kb on + strand, within BACOVA_03436 at 165.727 kb on - strand, within BACOVA_03436 at 165.733 kb on - strand, within BACOVA_03436 at 165.733 kb on - strand, within BACOVA_03436 at 165.739 kb on - strand, within BACOVA_03436 at 165.742 kb on + strand, within BACOVA_03436 at 165.743 kb on - strand, within BACOVA_03436 at 165.745 kb on - strand, within BACOVA_03436 at 165.745 kb on - strand, within BACOVA_03436 at 165.809 kb on + strand, within BACOVA_03436 at 165.819 kb on + strand, within BACOVA_03436 at 165.819 kb on + strand, within BACOVA_03436 at 165.862 kb on + strand, within BACOVA_03436 at 165.863 kb on - strand, within BACOVA_03436 at 165.863 kb on - strand, within BACOVA_03436 at 165.863 kb on - strand, within BACOVA_03436 at 165.884 kb on + strand, within BACOVA_03436 at 165.929 kb on - strand, within BACOVA_03436 at 165.930 kb on + strand, within BACOVA_03436 at 165.952 kb on + strand, within BACOVA_03436 at 165.954 kb on - strand, within BACOVA_03436 at 165.957 kb on + strand, within BACOVA_03436 at 166.015 kb on - strand, within BACOVA_03436 at 166.015 kb on - strand, within BACOVA_03436 at 166.019 kb on - strand, within BACOVA_03436 at 166.044 kb on + strand, within BACOVA_03436 at 166.054 kb on - strand, within BACOVA_03436 at 166.080 kb on + strand, within BACOVA_03436 at 166.081 kb on - strand, within BACOVA_03436 at 166.081 kb on - strand, within BACOVA_03436 at 166.093 kb on + strand, within BACOVA_03436 at 166.094 kb on - strand, within BACOVA_03436 at 166.164 kb on + strand, within BACOVA_03436 at 166.166 kb on + strand, within BACOVA_03436 at 166.167 kb on - strand, within BACOVA_03436 at 166.168 kb on + strand, within BACOVA_03436 at 166.168 kb on + strand, within BACOVA_03436 at 166.168 kb on + strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.169 kb on - strand, within BACOVA_03436 at 166.170 kb on + strand, within BACOVA_03436 at 166.170 kb on + strand, within BACOVA_03436 at 166.171 kb on - strand, within BACOVA_03436 at 166.171 kb on - strand, within BACOVA_03436 at 166.171 kb on - strand, within BACOVA_03436 at 166.173 kb on - strand, within BACOVA_03436 at 166.196 kb on - strand, within BACOVA_03436 at 166.197 kb on + strand, within BACOVA_03436 at 166.200 kb on - strand, within BACOVA_03436 at 166.206 kb on - strand, within BACOVA_03436 at 166.293 kb on + strand, within BACOVA_03436 at 166.294 kb on - strand, within BACOVA_03436 at 166.294 kb on - strand, within BACOVA_03436 at 166.302 kb on + strand, within BACOVA_03436 at 166.302 kb on + strand, within BACOVA_03436 at 166.302 kb on + strand, within BACOVA_03436 at 166.304 kb on + strand, within BACOVA_03436 at 166.304 kb on + strand, within BACOVA_03436 at 166.304 kb on + strand, within BACOVA_03436 at 166.381 kb on - strand at 166.386 kb on - strand at 166.404 kb on - strand at 166.410 kb on + strand at 166.414 kb on + strand at 166.421 kb on + strand at 166.434 kb on + strand at 166.434 kb on + strand at 166.465 kb on + strand at 166.473 kb on + strand at 166.480 kb on + strand at 166.505 kb on + strand at 166.538 kb on + strand at 166.538 kb on + strand at 166.538 kb on + strand at 166.539 kb on - strand at 166.539 kb on - strand at 166.560 kb on - strand at 166.632 kb on + strand at 166.632 kb on + strand at 166.632 kb on + strand at 166.632 kb on + strand at 166.633 kb on - strand at 166.633 kb on - strand at 166.675 kb on + strand at 166.676 kb on - strand at 166.676 kb on - strand at 166.676 kb on - strand at 166.677 kb on + strand at 166.681 kb on - strand at 166.684 kb on + strand at 166.684 kb on + strand at 166.685 kb on - strand at 166.738 kb on + strand at 166.738 kb on + strand at 166.739 kb on - strand at 166.750 kb on - strand at 166.753 kb on + strand at 166.786 kb on - strand at 166.821 kb on + strand at 166.900 kb on + strand at 166.923 kb on + strand, within BACOVA_03437 at 166.924 kb on - strand, within BACOVA_03437 at 166.924 kb on - strand, within BACOVA_03437 at 166.927 kb on - strand, within BACOVA_03437 at 166.999 kb on - strand, within BACOVA_03437 at 167.058 kb on + strand, within BACOVA_03437 at 167.059 kb on - strand, within BACOVA_03437 at 167.059 kb on - strand, within BACOVA_03437 at 167.071 kb on + strand, within BACOVA_03437 at 167.071 kb on + strand, within BACOVA_03437 at 167.134 kb on - strand, within BACOVA_03437 at 167.161 kb on + strand, within BACOVA_03437 at 167.232 kb on + strand, within BACOVA_03437 at 167.234 kb on + strand, within BACOVA_03437 at 167.261 kb on - strand, within BACOVA_03437 at 167.266 kb on + strand, within BACOVA_03437 at 167.277 kb on - strand, within BACOVA_03437 at 167.287 kb on + strand, within BACOVA_03437 at 167.317 kb on + strand, within BACOVA_03437 at 167.354 kb on - strand, within BACOVA_03437 at 167.354 kb on - strand, within BACOVA_03437 at 167.395 kb on + strand, within BACOVA_03437 at 167.427 kb on + strand, within BACOVA_03437 at 167.461 kb on + strand, within BACOVA_03437 at 167.465 kb on + strand, within BACOVA_03437 at 167.465 kb on + strand, within BACOVA_03437 at 167.469 kb on + strand, within BACOVA_03437 at 167.482 kb on + strand, within BACOVA_03437 at 167.482 kb on + strand, within BACOVA_03437
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 164,095 - BACOVA_03435 0.48 +0.5 164,142 + BACOVA_03435 0.51 +0.4 164,147 + BACOVA_03435 0.51 +1.1 164,147 + BACOVA_03435 0.51 -1.2 164,147 + BACOVA_03435 0.51 +0.5 164,211 + BACOVA_03435 0.54 +0.6 164,259 + BACOVA_03435 0.57 -0.4 164,260 - BACOVA_03435 0.57 -1.8 164,261 + BACOVA_03435 0.57 +1.1 164,261 + BACOVA_03435 0.57 -0.8 164,326 - BACOVA_03435 0.60 -0.3 164,328 + BACOVA_03435 0.60 +0.1 164,328 + BACOVA_03435 0.60 -1.2 164,328 + BACOVA_03435 0.60 -1.2 164,370 - BACOVA_03435 0.63 -0.5 164,370 - BACOVA_03435 0.63 -0.7 164,374 - BACOVA_03435 0.63 -0.5 164,413 + BACOVA_03435 0.65 +0.1 164,413 + BACOVA_03435 0.65 -0.3 164,413 + BACOVA_03435 0.65 +0.3 164,414 - BACOVA_03435 0.65 -0.3 164,414 - BACOVA_03435 0.65 +0.4 164,415 + BACOVA_03435 0.65 -0.7 164,416 - BACOVA_03435 0.65 -2.5 164,416 - BACOVA_03435 0.65 +0.6 164,461 + BACOVA_03435 0.67 -0.1 164,528 + BACOVA_03435 0.71 +0.1 164,528 + BACOVA_03435 0.71 -0.1 164,528 + BACOVA_03435 0.71 -0.9 164,531 + BACOVA_03435 0.71 -0.1 164,532 - BACOVA_03435 0.71 +1.1 164,652 + BACOVA_03435 0.77 -0.1 164,668 - BACOVA_03435 0.78 +1.1 164,702 - BACOVA_03435 0.80 -0.5 164,814 + BACOVA_03435 0.86 +1.7 164,815 - BACOVA_03435 0.86 -0.9 164,901 - -0.4 165,004 - -0.2 165,035 + -1.9 165,036 - +0.1 165,073 + +0.4 165,073 + -0.1 165,091 - +0.3 165,123 + +0.4 165,123 + -0.7 165,124 - -0.3 165,195 + -0.3 165,198 + -0.1 165,198 + +0.8 165,199 - -0.8 165,213 + +0.7 165,213 + +0.8 165,235 + BACOVA_03436 0.10 -1.0 165,235 + BACOVA_03436 0.10 +0.5 165,235 + BACOVA_03436 0.10 -0.7 165,236 - BACOVA_03436 0.10 +0.1 165,241 + BACOVA_03436 0.11 +2.7 165,242 - BACOVA_03436 0.11 +0.1 165,242 - BACOVA_03436 0.11 +1.1 165,244 - BACOVA_03436 0.11 -0.0 165,296 + BACOVA_03436 0.15 -0.1 165,296 + BACOVA_03436 0.15 -0.5 165,296 + BACOVA_03436 0.15 +0.3 165,299 - BACOVA_03436 0.15 -0.1 165,313 - BACOVA_03436 0.16 +0.1 165,412 - BACOVA_03436 0.23 +0.4 165,484 - BACOVA_03436 0.28 +0.2 165,484 - BACOVA_03436 0.28 -1.4 165,502 - BACOVA_03436 0.29 -2.4 165,544 + BACOVA_03436 0.32 +1.5 165,546 + BACOVA_03436 0.33 +1.3 165,547 - BACOVA_03436 0.33 +0.8 165,556 - BACOVA_03436 0.33 +0.3 165,586 + BACOVA_03436 0.35 -0.4 165,587 - BACOVA_03436 0.35 +0.2 165,587 - BACOVA_03436 0.35 -0.2 165,592 + BACOVA_03436 0.36 -0.7 165,593 - BACOVA_03436 0.36 +1.1 165,613 + BACOVA_03436 0.37 +0.2 165,613 + BACOVA_03436 0.37 +0.1 165,614 - BACOVA_03436 0.37 +1.5 165,614 - BACOVA_03436 0.37 +0.4 165,616 + BACOVA_03436 0.38 -0.1 165,616 + BACOVA_03436 0.38 -0.3 165,727 - BACOVA_03436 0.46 -0.3 165,733 - BACOVA_03436 0.46 -0.1 165,733 - BACOVA_03436 0.46 +3.2 165,739 - BACOVA_03436 0.46 +2.1 165,742 + BACOVA_03436 0.47 -0.5 165,743 - BACOVA_03436 0.47 +0.0 165,745 - BACOVA_03436 0.47 -0.6 165,745 - BACOVA_03436 0.47 -0.7 165,809 + BACOVA_03436 0.51 -0.7 165,819 + BACOVA_03436 0.52 -0.7 165,819 + BACOVA_03436 0.52 +0.9 165,862 + BACOVA_03436 0.55 +0.5 165,863 - BACOVA_03436 0.55 +1.1 165,863 - BACOVA_03436 0.55 -0.5 165,863 - BACOVA_03436 0.55 +0.1 165,884 + BACOVA_03436 0.57 +0.7 165,929 - BACOVA_03436 0.60 -0.3 165,930 + BACOVA_03436 0.60 +1.5 165,952 + BACOVA_03436 0.62 +0.6 165,954 - BACOVA_03436 0.62 -0.3 165,957 + BACOVA_03436 0.62 -0.4 166,015 - BACOVA_03436 0.66 -0.5 166,015 - BACOVA_03436 0.66 -0.9 166,019 - BACOVA_03436 0.67 -0.4 166,044 + BACOVA_03436 0.68 -0.2 166,054 - BACOVA_03436 0.69 +0.9 166,080 + BACOVA_03436 0.71 +0.4 166,081 - BACOVA_03436 0.71 +0.4 166,081 - BACOVA_03436 0.71 +0.1 166,093 + BACOVA_03436 0.72 +1.1 166,094 - BACOVA_03436 0.72 +0.0 166,164 + BACOVA_03436 0.77 -0.1 166,166 + BACOVA_03436 0.77 +0.8 166,167 - BACOVA_03436 0.77 -0.5 166,168 + BACOVA_03436 0.77 -0.7 166,168 + BACOVA_03436 0.77 -0.7 166,168 + BACOVA_03436 0.77 -0.0 166,169 - BACOVA_03436 0.77 -1.1 166,169 - BACOVA_03436 0.77 +0.1 166,169 - BACOVA_03436 0.77 -0.4 166,169 - BACOVA_03436 0.77 +0.9 166,169 - BACOVA_03436 0.77 +1.4 166,169 - BACOVA_03436 0.77 -0.5 166,169 - BACOVA_03436 0.77 -1.3 166,170 + BACOVA_03436 0.77 +1.1 166,170 + BACOVA_03436 0.77 -1.5 166,171 - BACOVA_03436 0.78 -0.9 166,171 - BACOVA_03436 0.78 -0.2 166,171 - BACOVA_03436 0.78 -0.2 166,173 - BACOVA_03436 0.78 +0.4 166,196 - BACOVA_03436 0.79 +0.9 166,197 + BACOVA_03436 0.79 +1.1 166,200 - BACOVA_03436 0.80 +0.3 166,206 - BACOVA_03436 0.80 +0.1 166,293 + BACOVA_03436 0.86 +0.4 166,294 - BACOVA_03436 0.86 -0.8 166,294 - BACOVA_03436 0.86 -0.1 166,302 + BACOVA_03436 0.87 +0.2 166,302 + BACOVA_03436 0.87 +0.6 166,302 + BACOVA_03436 0.87 -1.2 166,304 + BACOVA_03436 0.87 +1.2 166,304 + BACOVA_03436 0.87 +1.1 166,304 + BACOVA_03436 0.87 -1.3 166,381 - +0.2 166,386 - -0.3 166,404 - -0.5 166,410 + -0.0 166,414 + +0.7 166,421 + +1.0 166,434 + -0.7 166,434 + -0.7 166,465 + -0.6 166,473 + +0.2 166,480 + +0.1 166,505 + +0.4 166,538 + +0.5 166,538 + -0.3 166,538 + -0.7 166,539 - +0.5 166,539 - -2.5 166,560 - -0.4 166,632 + +0.3 166,632 + +0.2 166,632 + +0.7 166,632 + -0.7 166,633 - -0.2 166,633 - +0.5 166,675 + -0.9 166,676 - -0.3 166,676 - -0.4 166,676 - +0.1 166,677 + -0.5 166,681 - -0.5 166,684 + +1.7 166,684 + -0.7 166,685 - +0.3 166,738 + +0.2 166,738 + -0.9 166,739 - +0.6 166,750 - +0.2 166,753 + -0.2 166,786 - +0.8 166,821 + +0.1 166,900 + +0.2 166,923 + BACOVA_03437 0.10 -0.5 166,924 - BACOVA_03437 0.10 -0.9 166,924 - BACOVA_03437 0.10 +0.0 166,927 - BACOVA_03437 0.11 -0.1 166,999 - BACOVA_03437 0.12 -0.8 167,058 + BACOVA_03437 0.14 -0.7 167,059 - BACOVA_03437 0.14 +0.4 167,059 - BACOVA_03437 0.14 +1.1 167,071 + BACOVA_03437 0.14 +0.5 167,071 + BACOVA_03437 0.14 +0.9 167,134 - BACOVA_03437 0.16 -0.9 167,161 + BACOVA_03437 0.16 -0.0 167,232 + BACOVA_03437 0.18 -1.7 167,234 + BACOVA_03437 0.18 +0.2 167,261 - BACOVA_03437 0.19 +0.8 167,266 + BACOVA_03437 0.19 -2.6 167,277 - BACOVA_03437 0.19 -0.3 167,287 + BACOVA_03437 0.19 +1.4 167,317 + BACOVA_03437 0.20 -0.2 167,354 - BACOVA_03437 0.21 +1.2 167,354 - BACOVA_03437 0.21 -0.1 167,395 + BACOVA_03437 0.22 -0.9 167,427 + BACOVA_03437 0.23 +0.4 167,461 + BACOVA_03437 0.24 -0.3 167,465 + BACOVA_03437 0.24 -0.2 167,465 + BACOVA_03437 0.24 -2.1 167,469 + BACOVA_03437 0.24 +0.0 167,482 + BACOVA_03437 0.24 +0.3 167,482 + BACOVA_03437 0.24 +0.7
Or see this region's nucleotide sequence