Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02977

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02975 and BACOVA_02976 are separated by 111 nucleotidesBACOVA_02976 and BACOVA_02977 are separated by 115 nucleotidesBACOVA_02977 and BACOVA_02978 are separated by 31 nucleotides BACOVA_02975: BACOVA_02975 - trehalose-phosphatase, at 52,791 to 55,064 _02975 BACOVA_02976: BACOVA_02976 - hypothetical protein, at 55,176 to 55,364 _02976 BACOVA_02977: BACOVA_02977 - putative K+-transporting ATPase, F subunit, at 55,480 to 55,593 _02977 BACOVA_02978: BACOVA_02978 - K+-transporting ATPase, A subunit, at 55,625 to 57,331 _02978 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.489 kb on + strand, within BACOVA_02975at 54.555 kb on - strand, within BACOVA_02975at 54.634 kb on - strand, within BACOVA_02975at 54.640 kb on - strand, within BACOVA_02975at 54.725 kb on + strand, within BACOVA_02975at 54.726 kb on - strand, within BACOVA_02975at 54.728 kb on - strand, within BACOVA_02975at 54.728 kb on - strand, within BACOVA_02975at 54.730 kb on - strand, within BACOVA_02975at 54.734 kb on + strand, within BACOVA_02975at 54.734 kb on + strand, within BACOVA_02975at 54.735 kb on - strand, within BACOVA_02975at 54.735 kb on - strand, within BACOVA_02975at 54.736 kb on + strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.742 kb on + strand, within BACOVA_02975at 54.749 kb on - strand, within BACOVA_02975at 54.768 kb on - strand, within BACOVA_02975at 54.768 kb on - strand, within BACOVA_02975at 54.770 kb on + strand, within BACOVA_02975at 54.770 kb on + strand, within BACOVA_02975at 54.776 kb on + strand, within BACOVA_02975at 54.776 kb on + strand, within BACOVA_02975at 54.777 kb on - strand, within BACOVA_02975at 54.892 kb on - strandat 54.906 kb on + strandat 54.907 kb on - strandat 55.015 kb on - strandat 55.028 kb on + strandat 55.029 kb on - strandat 55.032 kb on - strandat 55.032 kb on - strandat 55.044 kb on - strandat 55.064 kb on + strandat 55.065 kb on - strandat 55.065 kb on - strandat 55.122 kb on - strandat 55.182 kb on - strandat 55.212 kb on - strand, within BACOVA_02976at 55.229 kb on - strand, within BACOVA_02976at 55.256 kb on - strand, within BACOVA_02976at 55.269 kb on - strand, within BACOVA_02976at 55.269 kb on - strand, within BACOVA_02976at 55.374 kb on - strandat 55.411 kb on + strandat 55.432 kb on + strandat 55.513 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.533 kb on - strand, within BACOVA_02977at 55.564 kb on + strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.616 kb on - strandat 55.622 kb on + strandat 55.622 kb on + strandat 55.623 kb on - strandat 55.624 kb on + strandat 55.631 kb on - strandat 55.659 kb on + strandat 55.706 kb on - strandat 55.706 kb on - strandat 55.769 kb on - strandat 55.769 kb on - strandat 55.867 kb on - strand, within BACOVA_02978at 55.940 kb on - strand, within BACOVA_02978at 55.942 kb on + strand, within BACOVA_02978at 55.951 kb on + strand, within BACOVA_02978at 55.958 kb on - strand, within BACOVA_02978at 55.982 kb on + strand, within BACOVA_02978at 55.983 kb on - strand, within BACOVA_02978at 55.984 kb on + strand, within BACOVA_02978at 55.984 kb on + strand, within BACOVA_02978at 56.006 kb on + strand, within BACOVA_02978at 56.045 kb on - strand, within BACOVA_02978at 56.063 kb on - strand, within BACOVA_02978at 56.063 kb on - strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.084 kb on - strand, within BACOVA_02978at 56.092 kb on + strand, within BACOVA_02978at 56.146 kb on - strand, within BACOVA_02978at 56.146 kb on - strand, within BACOVA_02978at 56.153 kb on - strand, within BACOVA_02978at 56.159 kb on - strand, within BACOVA_02978at 56.163 kb on + strand, within BACOVA_02978at 56.231 kb on - strand, within BACOVA_02978at 56.242 kb on - strand, within BACOVA_02978at 56.245 kb on + strand, within BACOVA_02978at 56.246 kb on - strand, within BACOVA_02978at 56.285 kb on - strand, within BACOVA_02978at 56.285 kb on - strand, within BACOVA_02978at 56.333 kb on + strand, within BACOVA_02978at 56.333 kb on + strand, within BACOVA_02978at 56.334 kb on - strand, within BACOVA_02978at 56.372 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.430 kb on + strand, within BACOVA_02978at 56.431 kb on - strand, within BACOVA_02978at 56.448 kb on - strand, within BACOVA_02978at 56.476 kb on + strand, within BACOVA_02978at 56.488 kb on - strand, within BACOVA_02978at 56.488 kb on - strand, within BACOVA_02978at 56.518 kb on + strand, within BACOVA_02978at 56.522 kb on - strand, within BACOVA_02978at 56.522 kb on - strand, within BACOVA_02978

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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54,489 + BACOVA_02975 0.75 +1.0
54,555 - BACOVA_02975 0.78 +1.0
54,634 - BACOVA_02975 0.81 +0.1
54,640 - BACOVA_02975 0.81 -0.3
54,725 + BACOVA_02975 0.85 +0.1
54,726 - BACOVA_02975 0.85 +0.2
54,728 - BACOVA_02975 0.85 -0.4
54,728 - BACOVA_02975 0.85 -0.3
54,730 - BACOVA_02975 0.85 -1.1
54,734 + BACOVA_02975 0.85 -0.2
54,734 + BACOVA_02975 0.85 -0.8
54,735 - BACOVA_02975 0.85 -1.3
54,735 - BACOVA_02975 0.85 -0.2
54,736 + BACOVA_02975 0.86 -0.1
54,737 - BACOVA_02975 0.86 -0.3
54,737 - BACOVA_02975 0.86 -0.6
54,737 - BACOVA_02975 0.86 -1.6
54,742 + BACOVA_02975 0.86 +0.1
54,749 - BACOVA_02975 0.86 -1.0
54,768 - BACOVA_02975 0.87 +1.0
54,768 - BACOVA_02975 0.87 +0.6
54,770 + BACOVA_02975 0.87 -0.6
54,770 + BACOVA_02975 0.87 +0.5
54,776 + BACOVA_02975 0.87 -1.1
54,776 + BACOVA_02975 0.87 +0.4
54,777 - BACOVA_02975 0.87 +0.3
54,892 - -0.2
54,906 + +0.6
54,907 - +0.0
55,015 - +0.2
55,028 + -0.4
55,029 - -0.9
55,032 - +0.8
55,032 - -0.3
55,044 - +0.1
55,064 + +0.6
55,065 - -0.7
55,065 - +1.0
55,122 - +1.0
55,182 - +0.9
55,212 - BACOVA_02976 0.19 +0.3
55,229 - BACOVA_02976 0.28 +0.6
55,256 - BACOVA_02976 0.42 +0.1
55,269 - BACOVA_02976 0.49 +0.7
55,269 - BACOVA_02976 0.49 +0.1
55,374 - -0.2
55,411 + +0.5
55,432 + +0.2
55,513 - BACOVA_02977 0.29 +1.1
55,517 - BACOVA_02977 0.32 +0.6
55,517 - BACOVA_02977 0.32 +1.6
55,517 - BACOVA_02977 0.32 +1.8
55,533 - BACOVA_02977 0.46 -0.8
55,564 + BACOVA_02977 0.74 +0.5
55,565 - BACOVA_02977 0.75 -0.1
55,565 - BACOVA_02977 0.75 +2.0
55,565 - BACOVA_02977 0.75 +0.5
55,616 - +0.3
55,622 + -0.3
55,622 + -0.5
55,623 - +1.9
55,624 + +0.7
55,631 - +0.0
55,659 + +1.0
55,706 - +1.4
55,706 - +0.0
55,769 - -0.3
55,769 - +0.1
55,867 - BACOVA_02978 0.14 -0.4
55,940 - BACOVA_02978 0.18 +0.3
55,942 + BACOVA_02978 0.19 +0.6
55,951 + BACOVA_02978 0.19 +0.4
55,958 - BACOVA_02978 0.20 -0.3
55,982 + BACOVA_02978 0.21 +1.4
55,983 - BACOVA_02978 0.21 +1.0
55,984 + BACOVA_02978 0.21 +1.2
55,984 + BACOVA_02978 0.21 +1.2
56,006 + BACOVA_02978 0.22 +0.3
56,045 - BACOVA_02978 0.25 +0.8
56,063 - BACOVA_02978 0.26 -0.1
56,063 - BACOVA_02978 0.26 +0.5
56,080 + BACOVA_02978 0.27 +0.0
56,080 + BACOVA_02978 0.27 -0.0
56,080 + BACOVA_02978 0.27 -1.0
56,084 - BACOVA_02978 0.27 -0.4
56,092 + BACOVA_02978 0.27 +0.5
56,146 - BACOVA_02978 0.31 -0.5
56,146 - BACOVA_02978 0.31 +1.5
56,153 - BACOVA_02978 0.31 -0.0
56,159 - BACOVA_02978 0.31 -0.2
56,163 + BACOVA_02978 0.32 +1.6
56,231 - BACOVA_02978 0.36 +0.5
56,242 - BACOVA_02978 0.36 +0.1
56,245 + BACOVA_02978 0.36 +0.6
56,246 - BACOVA_02978 0.36 -1.0
56,285 - BACOVA_02978 0.39 +2.0
56,285 - BACOVA_02978 0.39 -1.0
56,333 + BACOVA_02978 0.41 +1.5
56,333 + BACOVA_02978 0.41 +2.0
56,334 - BACOVA_02978 0.42 -0.3
56,372 - BACOVA_02978 0.44 +0.8
56,376 - BACOVA_02978 0.44 -0.5
56,376 - BACOVA_02978 0.44 +0.3
56,376 - BACOVA_02978 0.44 -0.5
56,430 + BACOVA_02978 0.47 -0.5
56,431 - BACOVA_02978 0.47 +0.0
56,448 - BACOVA_02978 0.48 +1.0
56,476 + BACOVA_02978 0.50 +0.4
56,488 - BACOVA_02978 0.51 +0.6
56,488 - BACOVA_02978 0.51 +0.5
56,518 + BACOVA_02978 0.52 -1.3
56,522 - BACOVA_02978 0.53 -2.0
56,522 - BACOVA_02978 0.53 -1.3

Or see this region's nucleotide sequence