Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02908 and BACOVA_02909 are separated by 327 nucleotides BACOVA_02909 and BACOVA_02910 are separated by 216 nucleotides
BACOVA_02908: BACOVA_02908 - hypothetical protein, at 410,712 to 411,872
_02908
BACOVA_02909: BACOVA_02909 - hypothetical protein, at 412,200 to 412,925
_02909
BACOVA_02910: BACOVA_02910 - methyltransferase domain protein, at 413,142 to 414,041
_02910
Position (kb) 412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 411.224 kb on + strand, within BACOVA_02908 at 411.224 kb on + strand, within BACOVA_02908 at 411.224 kb on + strand, within BACOVA_02908 at 411.224 kb on + strand, within BACOVA_02908 at 411.225 kb on - strand, within BACOVA_02908 at 411.225 kb on - strand, within BACOVA_02908 at 411.279 kb on - strand, within BACOVA_02908 at 411.279 kb on - strand, within BACOVA_02908 at 411.315 kb on - strand, within BACOVA_02908 at 411.334 kb on + strand, within BACOVA_02908 at 411.334 kb on + strand, within BACOVA_02908 at 411.334 kb on + strand, within BACOVA_02908 at 411.334 kb on + strand, within BACOVA_02908 at 411.335 kb on - strand, within BACOVA_02908 at 411.335 kb on - strand, within BACOVA_02908 at 411.335 kb on - strand, within BACOVA_02908 at 411.336 kb on + strand, within BACOVA_02908 at 411.336 kb on + strand, within BACOVA_02908 at 411.336 kb on + strand, within BACOVA_02908 at 411.348 kb on + strand, within BACOVA_02908 at 411.379 kb on - strand, within BACOVA_02908 at 411.406 kb on - strand, within BACOVA_02908 at 411.415 kb on + strand, within BACOVA_02908 at 411.416 kb on - strand, within BACOVA_02908 at 411.436 kb on - strand, within BACOVA_02908 at 411.436 kb on - strand, within BACOVA_02908 at 411.436 kb on - strand, within BACOVA_02908 at 411.501 kb on - strand, within BACOVA_02908 at 411.501 kb on - strand, within BACOVA_02908 at 411.501 kb on - strand, within BACOVA_02908 at 411.571 kb on - strand, within BACOVA_02908 at 411.577 kb on + strand, within BACOVA_02908 at 411.577 kb on + strand, within BACOVA_02908 at 411.594 kb on + strand, within BACOVA_02908 at 411.594 kb on + strand, within BACOVA_02908 at 411.602 kb on + strand, within BACOVA_02908 at 411.602 kb on + strand, within BACOVA_02908 at 411.603 kb on - strand, within BACOVA_02908 at 411.604 kb on + strand, within BACOVA_02908 at 411.605 kb on - strand, within BACOVA_02908 at 411.605 kb on - strand, within BACOVA_02908 at 411.656 kb on + strand, within BACOVA_02908 at 411.657 kb on - strand, within BACOVA_02908 at 411.689 kb on + strand, within BACOVA_02908 at 411.710 kb on - strand, within BACOVA_02908 at 411.719 kb on + strand, within BACOVA_02908 at 411.720 kb on - strand, within BACOVA_02908 at 411.720 kb on - strand, within BACOVA_02908 at 411.721 kb on + strand, within BACOVA_02908 at 411.721 kb on + strand, within BACOVA_02908 at 411.721 kb on + strand, within BACOVA_02908 at 411.722 kb on - strand, within BACOVA_02908 at 411.722 kb on - strand, within BACOVA_02908 at 411.724 kb on - strand, within BACOVA_02908 at 411.729 kb on - strand, within BACOVA_02908 at 411.771 kb on - strand at 411.771 kb on - strand at 411.782 kb on + strand at 411.782 kb on + strand at 411.783 kb on - strand at 411.783 kb on - strand at 411.783 kb on - strand at 411.791 kb on + strand at 411.792 kb on - strand at 411.792 kb on - strand at 411.808 kb on + strand at 411.809 kb on - strand at 411.863 kb on + strand at 411.863 kb on + strand at 411.863 kb on + strand at 411.863 kb on + strand at 411.864 kb on - strand at 411.864 kb on - strand at 411.867 kb on - strand at 411.867 kb on - strand at 411.881 kb on - strand at 411.888 kb on + strand at 411.888 kb on + strand at 411.889 kb on - strand at 411.908 kb on - strand at 411.942 kb on + strand at 411.943 kb on - strand at 411.943 kb on - strand at 411.945 kb on + strand at 411.945 kb on + strand at 411.945 kb on + strand at 411.945 kb on + strand at 411.949 kb on + strand at 411.950 kb on - strand at 411.992 kb on + strand at 411.993 kb on - strand at 412.016 kb on + strand at 412.035 kb on + strand at 412.035 kb on + strand at 412.054 kb on + strand at 412.060 kb on + strand at 412.099 kb on + strand at 412.119 kb on + strand at 412.123 kb on - strand at 412.148 kb on + strand at 412.152 kb on + strand at 412.152 kb on + strand at 412.152 kb on + strand at 412.155 kb on - strand at 412.155 kb on - strand at 412.174 kb on + strand at 412.192 kb on - strand at 412.196 kb on - strand at 412.196 kb on - strand at 412.226 kb on - strand at 412.250 kb on + strand at 412.250 kb on + strand at 412.251 kb on - strand at 412.254 kb on + strand at 412.254 kb on + strand at 412.262 kb on + strand at 412.263 kb on - strand at 412.292 kb on + strand, within BACOVA_02909 at 412.336 kb on - strand, within BACOVA_02909 at 412.377 kb on - strand, within BACOVA_02909 at 412.381 kb on + strand, within BACOVA_02909 at 412.381 kb on + strand, within BACOVA_02909 at 412.384 kb on + strand, within BACOVA_02909 at 412.385 kb on - strand, within BACOVA_02909 at 412.403 kb on + strand, within BACOVA_02909 at 412.429 kb on + strand, within BACOVA_02909 at 412.429 kb on + strand, within BACOVA_02909 at 412.433 kb on + strand, within BACOVA_02909 at 412.436 kb on + strand, within BACOVA_02909 at 412.442 kb on + strand, within BACOVA_02909 at 412.442 kb on + strand, within BACOVA_02909 at 412.455 kb on - strand, within BACOVA_02909 at 412.482 kb on + strand, within BACOVA_02909 at 412.482 kb on + strand, within BACOVA_02909 at 412.483 kb on - strand, within BACOVA_02909 at 412.558 kb on + strand, within BACOVA_02909 at 412.558 kb on + strand, within BACOVA_02909 at 412.559 kb on - strand, within BACOVA_02909 at 412.559 kb on - strand, within BACOVA_02909 at 412.559 kb on - strand, within BACOVA_02909 at 412.559 kb on - strand, within BACOVA_02909 at 412.585 kb on + strand, within BACOVA_02909 at 412.604 kb on - strand, within BACOVA_02909 at 412.609 kb on + strand, within BACOVA_02909 at 412.623 kb on + strand, within BACOVA_02909 at 412.641 kb on - strand, within BACOVA_02909 at 412.688 kb on - strand, within BACOVA_02909 at 412.693 kb on + strand, within BACOVA_02909 at 412.710 kb on + strand, within BACOVA_02909 at 412.710 kb on + strand, within BACOVA_02909 at 412.710 kb on + strand, within BACOVA_02909 at 412.711 kb on - strand, within BACOVA_02909 at 412.721 kb on - strand, within BACOVA_02909 at 412.721 kb on - strand, within BACOVA_02909 at 412.724 kb on + strand, within BACOVA_02909 at 412.724 kb on + strand, within BACOVA_02909 at 412.725 kb on - strand, within BACOVA_02909 at 412.726 kb on + strand, within BACOVA_02909 at 412.727 kb on - strand, within BACOVA_02909 at 412.733 kb on + strand, within BACOVA_02909 at 412.734 kb on - strand, within BACOVA_02909 at 412.736 kb on + strand, within BACOVA_02909 at 412.737 kb on - strand, within BACOVA_02909 at 412.737 kb on - strand, within BACOVA_02909 at 412.771 kb on - strand, within BACOVA_02909 at 412.782 kb on + strand, within BACOVA_02909 at 412.782 kb on + strand, within BACOVA_02909 at 412.783 kb on - strand, within BACOVA_02909 at 412.790 kb on - strand, within BACOVA_02909 at 412.905 kb on - strand at 412.907 kb on + strand at 412.910 kb on + strand at 412.934 kb on - strand at 412.979 kb on - strand at 413.025 kb on - strand at 413.092 kb on + strand at 413.132 kb on + strand at 413.132 kb on + strand at 413.136 kb on + strand at 413.158 kb on + strand at 413.220 kb on + strand at 413.247 kb on + strand, within BACOVA_02910 at 413.247 kb on + strand, within BACOVA_02910 at 413.270 kb on + strand, within BACOVA_02910 at 413.305 kb on + strand, within BACOVA_02910 at 413.316 kb on + strand, within BACOVA_02910 at 413.316 kb on + strand, within BACOVA_02910 at 413.369 kb on + strand, within BACOVA_02910 at 413.372 kb on + strand, within BACOVA_02910 at 413.382 kb on + strand, within BACOVA_02910 at 413.386 kb on + strand, within BACOVA_02910 at 413.394 kb on + strand, within BACOVA_02910 at 413.394 kb on + strand, within BACOVA_02910 at 413.396 kb on + strand, within BACOVA_02910 at 413.441 kb on + strand, within BACOVA_02910 at 413.462 kb on + strand, within BACOVA_02910 at 413.464 kb on + strand, within BACOVA_02910 at 413.725 kb on + strand, within BACOVA_02910 at 413.748 kb on + strand, within BACOVA_02910 at 413.772 kb on + strand, within BACOVA_02910 at 413.772 kb on + strand, within BACOVA_02910 at 413.827 kb on + strand, within BACOVA_02910 at 413.827 kb on + strand, within BACOVA_02910 at 413.827 kb on + strand, within BACOVA_02910 at 413.895 kb on + strand, within BACOVA_02910 at 413.895 kb on + strand, within BACOVA_02910
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 411,224 + BACOVA_02908 0.44 -0.6 411,224 + BACOVA_02908 0.44 +0.2 411,224 + BACOVA_02908 0.44 -0.3 411,224 + BACOVA_02908 0.44 +0.5 411,225 - BACOVA_02908 0.44 +0.5 411,225 - BACOVA_02908 0.44 +0.6 411,279 - BACOVA_02908 0.49 -0.6 411,279 - BACOVA_02908 0.49 +0.1 411,315 - BACOVA_02908 0.52 +0.7 411,334 + BACOVA_02908 0.54 +0.1 411,334 + BACOVA_02908 0.54 +1.0 411,334 + BACOVA_02908 0.54 +0.5 411,334 + BACOVA_02908 0.54 -0.4 411,335 - BACOVA_02908 0.54 +0.7 411,335 - BACOVA_02908 0.54 +1.0 411,335 - BACOVA_02908 0.54 +0.4 411,336 + BACOVA_02908 0.54 +0.1 411,336 + BACOVA_02908 0.54 -0.7 411,336 + BACOVA_02908 0.54 -0.6 411,348 + BACOVA_02908 0.55 -0.2 411,379 - BACOVA_02908 0.57 -1.8 411,406 - BACOVA_02908 0.60 +0.0 411,415 + BACOVA_02908 0.61 -0.4 411,416 - BACOVA_02908 0.61 -1.2 411,436 - BACOVA_02908 0.62 +0.3 411,436 - BACOVA_02908 0.62 -0.3 411,436 - BACOVA_02908 0.62 -0.2 411,501 - BACOVA_02908 0.68 +2.0 411,501 - BACOVA_02908 0.68 +0.6 411,501 - BACOVA_02908 0.68 +0.3 411,571 - BACOVA_02908 0.74 -2.5 411,577 + BACOVA_02908 0.75 +0.0 411,577 + BACOVA_02908 0.75 -0.1 411,594 + BACOVA_02908 0.76 +0.6 411,594 + BACOVA_02908 0.76 +0.2 411,602 + BACOVA_02908 0.77 -0.8 411,602 + BACOVA_02908 0.77 +0.6 411,603 - BACOVA_02908 0.77 -0.1 411,604 + BACOVA_02908 0.77 -0.1 411,605 - BACOVA_02908 0.77 +0.5 411,605 - BACOVA_02908 0.77 +0.7 411,656 + BACOVA_02908 0.81 +0.4 411,657 - BACOVA_02908 0.81 -1.8 411,689 + BACOVA_02908 0.84 -0.1 411,710 - BACOVA_02908 0.86 +1.1 411,719 + BACOVA_02908 0.87 -0.3 411,720 - BACOVA_02908 0.87 +0.4 411,720 - BACOVA_02908 0.87 -1.6 411,721 + BACOVA_02908 0.87 -0.2 411,721 + BACOVA_02908 0.87 -0.7 411,721 + BACOVA_02908 0.87 +0.2 411,722 - BACOVA_02908 0.87 +0.5 411,722 - BACOVA_02908 0.87 +1.3 411,724 - BACOVA_02908 0.87 -0.7 411,729 - BACOVA_02908 0.88 -0.1 411,771 - -0.5 411,771 - -0.2 411,782 + +0.4 411,782 + +0.1 411,783 - -1.2 411,783 - +0.0 411,783 - -0.1 411,791 + -0.1 411,792 - -0.2 411,792 - -0.6 411,808 + +0.6 411,809 - -1.6 411,863 + -0.0 411,863 + -0.4 411,863 + +0.0 411,863 + -0.0 411,864 - -0.7 411,864 - +0.4 411,867 - +0.5 411,867 - +0.0 411,881 - -0.8 411,888 + +0.8 411,888 + +0.4 411,889 - +1.2 411,908 - +0.3 411,942 + +0.5 411,943 - -0.5 411,943 - +0.9 411,945 + -0.4 411,945 + +0.2 411,945 + +0.3 411,945 + +1.5 411,949 + +0.5 411,950 - -0.2 411,992 + -0.8 411,993 - +0.6 412,016 + +0.7 412,035 + -0.5 412,035 + +0.4 412,054 + +1.0 412,060 + -0.1 412,099 + +0.2 412,119 + -0.2 412,123 - -0.6 412,148 + +0.1 412,152 + -0.1 412,152 + +0.0 412,152 + -0.4 412,155 - +0.4 412,155 - -0.7 412,174 + -0.6 412,192 - -0.3 412,196 - +0.9 412,196 - +0.2 412,226 - +0.2 412,250 + +0.1 412,250 + +2.0 412,251 - -3.3 412,254 + -0.1 412,254 + -0.1 412,262 + -0.6 412,263 - +0.2 412,292 + BACOVA_02909 0.13 +0.6 412,336 - BACOVA_02909 0.19 +0.4 412,377 - BACOVA_02909 0.24 +0.0 412,381 + BACOVA_02909 0.25 +0.6 412,381 + BACOVA_02909 0.25 -0.3 412,384 + BACOVA_02909 0.25 +1.5 412,385 - BACOVA_02909 0.25 +0.4 412,403 + BACOVA_02909 0.28 -0.5 412,429 + BACOVA_02909 0.32 +0.4 412,429 + BACOVA_02909 0.32 -0.1 412,433 + BACOVA_02909 0.32 -0.8 412,436 + BACOVA_02909 0.33 -2.6 412,442 + BACOVA_02909 0.33 +0.5 412,442 + BACOVA_02909 0.33 +0.5 412,455 - BACOVA_02909 0.35 -0.9 412,482 + BACOVA_02909 0.39 -0.9 412,482 + BACOVA_02909 0.39 +0.7 412,483 - BACOVA_02909 0.39 +0.3 412,558 + BACOVA_02909 0.49 -0.4 412,558 + BACOVA_02909 0.49 +0.3 412,559 - BACOVA_02909 0.49 +1.0 412,559 - BACOVA_02909 0.49 -0.2 412,559 - BACOVA_02909 0.49 +1.0 412,559 - BACOVA_02909 0.49 +0.1 412,585 + BACOVA_02909 0.53 -0.8 412,604 - BACOVA_02909 0.56 -1.7 412,609 + BACOVA_02909 0.56 -1.1 412,623 + BACOVA_02909 0.58 -1.0 412,641 - BACOVA_02909 0.61 -0.2 412,688 - BACOVA_02909 0.67 +1.0 412,693 + BACOVA_02909 0.68 +1.0 412,710 + BACOVA_02909 0.70 +0.1 412,710 + BACOVA_02909 0.70 +0.5 412,710 + BACOVA_02909 0.70 +0.7 412,711 - BACOVA_02909 0.70 -0.1 412,721 - BACOVA_02909 0.72 +0.3 412,721 - BACOVA_02909 0.72 +0.1 412,724 + BACOVA_02909 0.72 -1.2 412,724 + BACOVA_02909 0.72 +0.2 412,725 - BACOVA_02909 0.72 +0.5 412,726 + BACOVA_02909 0.72 +0.6 412,727 - BACOVA_02909 0.73 -1.5 412,733 + BACOVA_02909 0.73 +0.3 412,734 - BACOVA_02909 0.74 -0.1 412,736 + BACOVA_02909 0.74 -0.4 412,737 - BACOVA_02909 0.74 -0.6 412,737 - BACOVA_02909 0.74 -0.4 412,771 - BACOVA_02909 0.79 +0.4 412,782 + BACOVA_02909 0.80 -1.2 412,782 + BACOVA_02909 0.80 +1.5 412,783 - BACOVA_02909 0.80 -1.1 412,790 - BACOVA_02909 0.81 -0.4 412,905 - +0.1 412,907 + +0.4 412,910 + -3.4 412,934 - +1.0 412,979 - +0.2 413,025 - +0.4 413,092 + -2.0 413,132 + -0.2 413,132 + +0.5 413,136 + +0.0 413,158 + +0.6 413,220 + -1.3 413,247 + BACOVA_02910 0.12 +0.7 413,247 + BACOVA_02910 0.12 +0.1 413,270 + BACOVA_02910 0.14 +0.3 413,305 + BACOVA_02910 0.18 -1.1 413,316 + BACOVA_02910 0.19 +1.5 413,316 + BACOVA_02910 0.19 -0.6 413,369 + BACOVA_02910 0.25 +1.4 413,372 + BACOVA_02910 0.26 +0.9 413,382 + BACOVA_02910 0.27 +1.0 413,386 + BACOVA_02910 0.27 +0.7 413,394 + BACOVA_02910 0.28 +0.0 413,394 + BACOVA_02910 0.28 +1.3 413,396 + BACOVA_02910 0.28 +0.3 413,441 + BACOVA_02910 0.33 +1.8 413,462 + BACOVA_02910 0.36 +0.6 413,464 + BACOVA_02910 0.36 +0.7 413,725 + BACOVA_02910 0.65 +0.7 413,748 + BACOVA_02910 0.67 +0.4 413,772 + BACOVA_02910 0.70 +1.5 413,772 + BACOVA_02910 0.70 +0.7 413,827 + BACOVA_02910 0.76 +1.2 413,827 + BACOVA_02910 0.76 +0.5 413,827 + BACOVA_02910 0.76 -0.5 413,895 + BACOVA_02910 0.84 +0.3 413,895 + BACOVA_02910 0.84 +0.6
Or see this region's nucleotide sequence