Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02445

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02446 and BACOVA_02445 overlap by 45 nucleotidesBACOVA_02445 and BACOVA_02447 are separated by 53 nucleotidesBACOVA_02447 and BACOVA_02448 are separated by 16 nucleotides BACOVA_02446: BACOVA_02446 - glycine hydroxymethyltransferase, at 211,681 to 212,961 _02446 BACOVA_02445: BACOVA_02445 - hypothetical protein, at 212,917 to 213,042 _02445 BACOVA_02447: BACOVA_02447 - hypothetical protein, at 213,096 to 213,833 _02447 BACOVA_02448: BACOVA_02448 - flavin reductase-like protein, at 213,850 to 214,419 _02448 Position (kb) 212 213 214Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 211.989 kb on + strand, within BACOVA_02446at 211.989 kb on + strand, within BACOVA_02446at 212.053 kb on + strand, within BACOVA_02446at 212.054 kb on - strand, within BACOVA_02446at 212.054 kb on - strand, within BACOVA_02446at 212.072 kb on - strand, within BACOVA_02446at 212.084 kb on + strand, within BACOVA_02446at 212.085 kb on - strand, within BACOVA_02446at 212.085 kb on - strand, within BACOVA_02446at 212.140 kb on + strand, within BACOVA_02446at 212.140 kb on + strand, within BACOVA_02446at 212.141 kb on - strand, within BACOVA_02446at 212.141 kb on - strand, within BACOVA_02446at 212.299 kb on - strand, within BACOVA_02446at 212.299 kb on - strand, within BACOVA_02446at 212.307 kb on + strand, within BACOVA_02446at 212.308 kb on - strand, within BACOVA_02446at 212.319 kb on + strand, within BACOVA_02446at 212.320 kb on - strand, within BACOVA_02446at 212.327 kb on + strand, within BACOVA_02446at 212.328 kb on - strand, within BACOVA_02446at 212.404 kb on + strand, within BACOVA_02446at 212.427 kb on + strand, within BACOVA_02446at 212.428 kb on - strand, within BACOVA_02446at 212.453 kb on + strand, within BACOVA_02446at 212.454 kb on - strand, within BACOVA_02446at 212.567 kb on + strand, within BACOVA_02446at 212.567 kb on + strand, within BACOVA_02446at 212.682 kb on + strand, within BACOVA_02446at 212.682 kb on + strand, within BACOVA_02446at 212.682 kb on + strand, within BACOVA_02446at 212.682 kb on + strand, within BACOVA_02446at 212.683 kb on - strand, within BACOVA_02446at 212.683 kb on - strand, within BACOVA_02446at 212.708 kb on - strand, within BACOVA_02446at 212.776 kb on + strand, within BACOVA_02446at 212.795 kb on + strand, within BACOVA_02446at 212.796 kb on - strand, within BACOVA_02446at 212.822 kb on + strand, within BACOVA_02446at 212.829 kb on + strand, within BACOVA_02446at 212.889 kb on + strandat 212.969 kb on + strand, within BACOVA_02445at 212.970 kb on - strand, within BACOVA_02445at 212.974 kb on - strand, within BACOVA_02445at 212.974 kb on - strand, within BACOVA_02445at 212.998 kb on - strand, within BACOVA_02445at 213.002 kb on - strand, within BACOVA_02445at 213.002 kb on - strand, within BACOVA_02445at 213.006 kb on + strand, within BACOVA_02445at 213.033 kb on + strandat 213.034 kb on - strandat 213.098 kb on - strandat 213.185 kb on + strand, within BACOVA_02447at 213.186 kb on - strand, within BACOVA_02447at 213.194 kb on - strand, within BACOVA_02447at 213.194 kb on - strand, within BACOVA_02447at 213.213 kb on - strand, within BACOVA_02447at 213.271 kb on - strand, within BACOVA_02447at 213.339 kb on - strand, within BACOVA_02447at 213.370 kb on + strand, within BACOVA_02447at 213.395 kb on + strand, within BACOVA_02447at 213.395 kb on + strand, within BACOVA_02447at 213.429 kb on - strand, within BACOVA_02447at 213.485 kb on - strand, within BACOVA_02447at 213.485 kb on - strand, within BACOVA_02447at 213.546 kb on + strand, within BACOVA_02447at 213.547 kb on - strand, within BACOVA_02447at 213.551 kb on + strand, within BACOVA_02447at 213.616 kb on + strand, within BACOVA_02447at 213.621 kb on + strand, within BACOVA_02447at 213.622 kb on - strand, within BACOVA_02447at 213.622 kb on - strand, within BACOVA_02447at 213.622 kb on - strand, within BACOVA_02447at 213.622 kb on - strand, within BACOVA_02447at 213.622 kb on - strand, within BACOVA_02447at 213.655 kb on - strand, within BACOVA_02447at 213.662 kb on + strand, within BACOVA_02447at 213.663 kb on - strand, within BACOVA_02447at 213.719 kb on + strand, within BACOVA_02447at 213.720 kb on - strand, within BACOVA_02447at 213.763 kb on + strandat 213.763 kb on + strandat 213.764 kb on - strandat 213.764 kb on - strandat 213.791 kb on + strandat 213.791 kb on + strandat 213.792 kb on - strandat 213.792 kb on - strandat 213.795 kb on + strandat 213.795 kb on + strandat 213.796 kb on - strandat 213.818 kb on + strandat 213.818 kb on + strandat 213.827 kb on + strandat 213.827 kb on + strandat 213.827 kb on + strandat 213.827 kb on + strandat 213.828 kb on - strandat 213.909 kb on - strand, within BACOVA_02448at 213.909 kb on - strand, within BACOVA_02448at 213.926 kb on + strand, within BACOVA_02448at 213.926 kb on + strand, within BACOVA_02448at 213.926 kb on + strand, within BACOVA_02448at 213.927 kb on - strand, within BACOVA_02448at 213.927 kb on - strand, within BACOVA_02448at 214.006 kb on + strand, within BACOVA_02448at 214.023 kb on + strand, within BACOVA_02448

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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211,989 + BACOVA_02446 0.24 -0.8
211,989 + BACOVA_02446 0.24 -2.5
212,053 + BACOVA_02446 0.29 -3.6
212,054 - BACOVA_02446 0.29 -5.2
212,054 - BACOVA_02446 0.29 -3.2
212,072 - BACOVA_02446 0.31 -4.4
212,084 + BACOVA_02446 0.31 -3.2
212,085 - BACOVA_02446 0.32 -4.0
212,085 - BACOVA_02446 0.32 -2.4
212,140 + BACOVA_02446 0.36 -3.8
212,140 + BACOVA_02446 0.36 -2.7
212,141 - BACOVA_02446 0.36 -2.2
212,141 - BACOVA_02446 0.36 -2.4
212,299 - BACOVA_02446 0.48 -2.2
212,299 - BACOVA_02446 0.48 -1.2
212,307 + BACOVA_02446 0.49 -2.0
212,308 - BACOVA_02446 0.49 -1.5
212,319 + BACOVA_02446 0.50 -3.2
212,320 - BACOVA_02446 0.50 -2.0
212,327 + BACOVA_02446 0.50 -5.8
212,328 - BACOVA_02446 0.51 -3.0
212,404 + BACOVA_02446 0.56 -1.2
212,427 + BACOVA_02446 0.58 -2.5
212,428 - BACOVA_02446 0.58 -4.2
212,453 + BACOVA_02446 0.60 -3.6
212,454 - BACOVA_02446 0.60 -2.7
212,567 + BACOVA_02446 0.69 -3.8
212,567 + BACOVA_02446 0.69 -1.5
212,682 + BACOVA_02446 0.78 +0.8
212,682 + BACOVA_02446 0.78 -2.7
212,682 + BACOVA_02446 0.78 -2.0
212,682 + BACOVA_02446 0.78 -0.9
212,683 - BACOVA_02446 0.78 -2.7
212,683 - BACOVA_02446 0.78 -1.2
212,708 - BACOVA_02446 0.80 -0.8
212,776 + BACOVA_02446 0.85 -3.0
212,795 + BACOVA_02446 0.87 -2.4
212,796 - BACOVA_02446 0.87 -4.6
212,822 + BACOVA_02446 0.89 -2.4
212,829 + BACOVA_02446 0.90 -1.2
212,889 + -3.8
212,969 + BACOVA_02445 0.41 -3.1
212,970 - BACOVA_02445 0.42 -1.2
212,974 - BACOVA_02445 0.45 -3.1
212,974 - BACOVA_02445 0.45 -3.0
212,998 - BACOVA_02445 0.64 +0.8
213,002 - BACOVA_02445 0.67 +0.5
213,002 - BACOVA_02445 0.67 +1.4
213,006 + BACOVA_02445 0.71 -2.0
213,033 + -1.8
213,034 - +0.5
213,098 - -0.0
213,185 + BACOVA_02447 0.12 -0.3
213,186 - BACOVA_02447 0.12 +0.2
213,194 - BACOVA_02447 0.13 +0.3
213,194 - BACOVA_02447 0.13 -1.2
213,213 - BACOVA_02447 0.16 -0.2
213,271 - BACOVA_02447 0.24 -0.5
213,339 - BACOVA_02447 0.33 -0.2
213,370 + BACOVA_02447 0.37 -0.2
213,395 + BACOVA_02447 0.41 +0.8
213,395 + BACOVA_02447 0.41 -0.5
213,429 - BACOVA_02447 0.45 -0.3
213,485 - BACOVA_02447 0.53 -0.5
213,485 - BACOVA_02447 0.53 -1.9
213,546 + BACOVA_02447 0.61 -0.3
213,547 - BACOVA_02447 0.61 -1.1
213,551 + BACOVA_02447 0.62 +1.2
213,616 + BACOVA_02447 0.70 -1.1
213,621 + BACOVA_02447 0.71 -0.0
213,622 - BACOVA_02447 0.71 -0.0
213,622 - BACOVA_02447 0.71 +1.4
213,622 - BACOVA_02447 0.71 +0.8
213,622 - BACOVA_02447 0.71 -0.8
213,622 - BACOVA_02447 0.71 +0.0
213,655 - BACOVA_02447 0.76 +0.8
213,662 + BACOVA_02447 0.77 -0.5
213,663 - BACOVA_02447 0.77 -0.5
213,719 + BACOVA_02447 0.84 -0.8
213,720 - BACOVA_02447 0.85 +0.5
213,763 + +0.7
213,763 + -0.2
213,764 - +2.0
213,764 - +1.2
213,791 + -0.0
213,791 + -0.1
213,792 - +0.1
213,792 - +0.4
213,795 + -1.0
213,795 + +0.7
213,796 - -0.8
213,818 + +0.9
213,818 + +0.2
213,827 + -0.7
213,827 + -0.4
213,827 + +0.8
213,827 + -1.1
213,828 - +0.2
213,909 - BACOVA_02448 0.10 -0.4
213,909 - BACOVA_02448 0.10 -0.1
213,926 + BACOVA_02448 0.13 -1.9
213,926 + BACOVA_02448 0.13 -1.1
213,926 + BACOVA_02448 0.13 -0.5
213,927 - BACOVA_02448 0.14 -0.8
213,927 - BACOVA_02448 0.14 -1.0
214,006 + BACOVA_02448 0.27 -0.1
214,023 + BACOVA_02448 0.30 +0.2

Or see this region's nucleotide sequence