Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04957 and BACOVA_04958 are separated by 503 nucleotides BACOVA_04958 and BACOVA_04959 are separated by 128 nucleotides BACOVA_04959 and BACOVA_04960 overlap by 8 nucleotides
BACOVA_04957: BACOVA_04957 - TonB-linked outer membrane protein, SusC/RagA family, at 390,702 to 393,833
_04957
BACOVA_04958: BACOVA_04958 - site-specific recombinase, phage integrase family, at 394,337 to 395,650
_04958
BACOVA_04959: BACOVA_04959 - hypothetical protein, at 395,779 to 395,898
_04959
BACOVA_04960: BACOVA_04960 - hypothetical protein, at 395,891 to 396,928
_04960
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 393.338 kb on + strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.339 kb on - strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.345 kb on + strand, within BACOVA_04957 at 393.468 kb on + strand, within BACOVA_04957 at 393.477 kb on + strand, within BACOVA_04957 at 393.477 kb on + strand, within BACOVA_04957 at 393.478 kb on - strand, within BACOVA_04957 at 393.488 kb on - strand, within BACOVA_04957 at 393.518 kb on + strand, within BACOVA_04957 at 393.527 kb on + strand at 393.564 kb on + strand at 393.564 kb on + strand at 393.565 kb on - strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.568 kb on + strand at 393.569 kb on - strand at 393.585 kb on - strand at 393.625 kb on - strand at 393.632 kb on + strand at 393.645 kb on - strand at 393.657 kb on - strand at 393.734 kb on - strand at 393.744 kb on + strand at 393.788 kb on + strand at 393.795 kb on - strand at 393.795 kb on - strand at 393.795 kb on - strand at 393.797 kb on - strand at 393.797 kb on - strand at 393.802 kb on + strand at 393.843 kb on - strand at 393.846 kb on - strand at 393.850 kb on + strand at 393.852 kb on + strand at 393.853 kb on - strand at 393.865 kb on - strand at 393.866 kb on + strand at 393.867 kb on - strand at 393.875 kb on + strand at 393.875 kb on + strand at 393.925 kb on + strand at 393.954 kb on + strand at 393.965 kb on - strand at 393.983 kb on - strand at 393.995 kb on + strand at 394.000 kb on - strand at 394.009 kb on - strand at 394.009 kb on - strand at 394.024 kb on - strand at 394.034 kb on + strand at 394.080 kb on + strand at 394.080 kb on + strand at 394.118 kb on + strand at 394.118 kb on + strand at 394.118 kb on + strand at 394.119 kb on - strand at 394.131 kb on - strand at 394.139 kb on + strand at 394.144 kb on - strand at 394.146 kb on + strand at 394.184 kb on + strand at 394.186 kb on + strand at 394.186 kb on + strand at 394.187 kb on - strand at 394.187 kb on - strand at 394.190 kb on + strand at 394.190 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.208 kb on + strand at 394.228 kb on + strand at 394.228 kb on + strand at 394.228 kb on + strand at 394.229 kb on - strand at 394.230 kb on + strand at 394.235 kb on + strand at 394.236 kb on - strand at 394.250 kb on + strand at 394.250 kb on + strand at 394.251 kb on - strand at 394.253 kb on - strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.333 kb on + strand at 394.334 kb on - strand at 394.334 kb on - strand at 394.335 kb on + strand at 394.338 kb on + strand at 394.341 kb on - strand at 394.355 kb on + strand at 394.391 kb on - strand at 394.396 kb on + strand at 394.399 kb on + strand at 394.400 kb on - strand at 394.401 kb on + strand at 394.402 kb on - strand at 394.406 kb on - strand at 394.411 kb on + strand at 394.411 kb on + strand at 394.446 kb on + strand at 394.447 kb on + strand at 394.447 kb on - strand at 394.479 kb on + strand, within BACOVA_04958 at 394.515 kb on + strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.516 kb on - strand, within BACOVA_04958 at 394.551 kb on - strand, within BACOVA_04958 at 394.556 kb on - strand, within BACOVA_04958 at 394.559 kb on + strand, within BACOVA_04958 at 394.559 kb on + strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.560 kb on - strand, within BACOVA_04958 at 394.561 kb on + strand, within BACOVA_04958 at 394.579 kb on + strand, within BACOVA_04958 at 394.579 kb on + strand, within BACOVA_04958 at 394.583 kb on + strand, within BACOVA_04958 at 394.584 kb on - strand, within BACOVA_04958 at 394.591 kb on + strand, within BACOVA_04958 at 394.592 kb on - strand, within BACOVA_04958 at 394.603 kb on - strand, within BACOVA_04958 at 394.603 kb on - strand, within BACOVA_04958 at 394.636 kb on + strand, within BACOVA_04958 at 394.637 kb on - strand, within BACOVA_04958 at 394.638 kb on + strand, within BACOVA_04958 at 394.638 kb on + strand, within BACOVA_04958 at 394.646 kb on + strand, within BACOVA_04958 at 394.705 kb on + strand, within BACOVA_04958 at 394.706 kb on - strand, within BACOVA_04958 at 394.706 kb on - strand, within BACOVA_04958 at 394.708 kb on + strand, within BACOVA_04958 at 394.709 kb on - strand, within BACOVA_04958 at 394.728 kb on + strand, within BACOVA_04958 at 394.728 kb on + strand, within BACOVA_04958 at 394.729 kb on - strand, within BACOVA_04958 at 394.745 kb on - strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.760 kb on + strand, within BACOVA_04958 at 394.761 kb on - strand, within BACOVA_04958 at 394.763 kb on + strand, within BACOVA_04958 at 394.795 kb on - strand, within BACOVA_04958 at 394.801 kb on + strand, within BACOVA_04958 at 394.802 kb on - strand, within BACOVA_04958 at 394.802 kb on - strand, within BACOVA_04958 at 394.807 kb on + strand, within BACOVA_04958 at 394.903 kb on + strand, within BACOVA_04958 at 394.945 kb on - strand, within BACOVA_04958 at 394.949 kb on + strand, within BACOVA_04958 at 394.949 kb on + strand, within BACOVA_04958 at 394.953 kb on + strand, within BACOVA_04958 at 394.953 kb on + strand, within BACOVA_04958 at 394.954 kb on - strand, within BACOVA_04958 at 394.954 kb on - strand, within BACOVA_04958 at 394.963 kb on + strand, within BACOVA_04958 at 394.971 kb on + strand, within BACOVA_04958 at 394.976 kb on + strand, within BACOVA_04958 at 394.976 kb on + strand, within BACOVA_04958 at 394.989 kb on - strand, within BACOVA_04958 at 395.011 kb on + strand, within BACOVA_04958 at 395.017 kb on + strand, within BACOVA_04958 at 395.017 kb on + strand, within BACOVA_04958 at 395.063 kb on - strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.066 kb on + strand, within BACOVA_04958 at 395.067 kb on - strand, within BACOVA_04958 at 395.067 kb on - strand, within BACOVA_04958 at 395.136 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.184 kb on + strand, within BACOVA_04958 at 395.185 kb on - strand, within BACOVA_04958 at 395.210 kb on + strand, within BACOVA_04958 at 395.236 kb on + strand, within BACOVA_04958 at 395.248 kb on + strand, within BACOVA_04958 at 395.315 kb on + strand, within BACOVA_04958 at 395.414 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.416 kb on + strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.417 kb on - strand, within BACOVA_04958 at 395.441 kb on + strand, within BACOVA_04958 at 395.453 kb on + strand, within BACOVA_04958 at 395.530 kb on + strand at 395.555 kb on - strand at 395.560 kb on - strand at 395.577 kb on + strand at 395.577 kb on + strand at 395.672 kb on + strand at 395.681 kb on + strand at 395.690 kb on - strand at 395.774 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.778 kb on - strand at 395.814 kb on + strand, within BACOVA_04959 at 395.815 kb on - strand, within BACOVA_04959 at 395.896 kb on + strand at 395.928 kb on - strand at 395.958 kb on + strand at 395.959 kb on - strand at 395.959 kb on - strand at 395.978 kb on - strand at 395.993 kb on - strand at 396.039 kb on + strand, within BACOVA_04960 at 396.043 kb on - strand, within BACOVA_04960 at 396.043 kb on - strand, within BACOVA_04960 at 396.070 kb on + strand, within BACOVA_04960 at 396.070 kb on + strand, within BACOVA_04960 at 396.210 kb on + strand, within BACOVA_04960 at 396.213 kb on + strand, within BACOVA_04960 at 396.214 kb on - strand, within BACOVA_04960 at 396.214 kb on - strand, within BACOVA_04960 at 396.228 kb on - strand, within BACOVA_04960 at 396.285 kb on + strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.286 kb on - strand, within BACOVA_04960 at 396.295 kb on + strand, within BACOVA_04960 at 396.296 kb on - strand, within BACOVA_04960 at 396.302 kb on - strand, within BACOVA_04960 at 396.367 kb on + strand, within BACOVA_04960 at 396.368 kb on - strand, within BACOVA_04960 at 396.393 kb on + strand, within BACOVA_04960 at 396.464 kb on - strand, within BACOVA_04960 at 396.479 kb on - strand, within BACOVA_04960 at 396.487 kb on + strand, within BACOVA_04960 at 396.511 kb on + strand, within BACOVA_04960 at 396.596 kb on + strand, within BACOVA_04960 at 396.603 kb on + strand, within BACOVA_04960 at 396.603 kb on + strand, within BACOVA_04960 at 396.604 kb on - strand, within BACOVA_04960 at 396.642 kb on + strand, within BACOVA_04960 at 396.643 kb on - strand, within BACOVA_04960 at 396.647 kb on - strand, within BACOVA_04960 at 396.647 kb on - strand, within BACOVA_04960
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 393,338 + BACOVA_04957 0.84 -1.2 393,339 - BACOVA_04957 0.84 +0.6 393,339 - BACOVA_04957 0.84 -1.2 393,339 - BACOVA_04957 0.84 -1.6 393,339 - BACOVA_04957 0.84 +0.2 393,345 + BACOVA_04957 0.84 +3.0 393,345 + BACOVA_04957 0.84 -0.4 393,345 + BACOVA_04957 0.84 +1.3 393,468 + BACOVA_04957 0.88 -2.4 393,477 + BACOVA_04957 0.89 +1.3 393,477 + BACOVA_04957 0.89 -1.6 393,478 - BACOVA_04957 0.89 +0.6 393,488 - BACOVA_04957 0.89 -2.1 393,518 + BACOVA_04957 0.90 +1.4 393,527 + +0.5 393,564 + +1.6 393,564 + +0.9 393,565 - -2.8 393,568 + +0.4 393,568 + +0.6 393,568 + +0.2 393,568 + +0.2 393,568 + +0.9 393,568 + -1.4 393,569 - +2.0 393,585 - -1.0 393,625 - -0.0 393,632 + -1.0 393,645 - -0.0 393,657 - +1.3 393,734 - -1.5 393,744 + +2.2 393,788 + +0.6 393,795 - +0.1 393,795 - +1.4 393,795 - -1.7 393,797 - +1.7 393,797 - +2.2 393,802 + +1.0 393,843 - -2.0 393,846 - +0.2 393,850 + -0.0 393,852 + +2.0 393,853 - -0.0 393,865 - +2.0 393,866 + +0.8 393,867 - -0.5 393,875 + -2.6 393,875 + +1.1 393,925 + -0.9 393,954 + +1.3 393,965 - +1.2 393,983 - -0.4 393,995 + +2.9 394,000 - -0.8 394,009 - -0.9 394,009 - -0.5 394,024 - +1.1 394,034 + +0.8 394,080 + -0.0 394,080 + +0.4 394,118 + +4.3 394,118 + -0.4 394,118 + +1.2 394,119 - -0.4 394,131 - -0.5 394,139 + +1.2 394,144 - +2.5 394,146 + -2.4 394,184 + -0.0 394,186 + +1.8 394,186 + -0.8 394,187 - +2.2 394,187 - +2.2 394,190 + -0.8 394,190 + +1.0 394,208 + +1.5 394,208 + +1.5 394,208 + -0.0 394,208 + +1.3 394,228 + -0.6 394,228 + -1.0 394,228 + -1.5 394,229 - +1.3 394,230 + +1.6 394,235 + -2.5 394,236 - -0.0 394,250 + -1.9 394,250 + +1.3 394,251 - -0.4 394,253 - -0.7 394,333 + +0.9 394,333 + -1.6 394,333 + +1.8 394,333 + -0.7 394,334 - +1.7 394,334 - -0.4 394,335 + +0.6 394,338 + +1.5 394,341 - -1.0 394,355 + +1.3 394,391 - +1.0 394,396 + -1.8 394,399 + +3.6 394,400 - +0.6 394,401 + +1.6 394,402 - +2.5 394,406 - -2.5 394,411 + +0.6 394,411 + +1.2 394,446 + -2.5 394,447 + -1.1 394,447 - +0.9 394,479 + BACOVA_04958 0.11 -0.8 394,515 + BACOVA_04958 0.14 -2.3 394,516 - BACOVA_04958 0.14 +1.0 394,516 - BACOVA_04958 0.14 -1.0 394,516 - BACOVA_04958 0.14 -1.8 394,551 - BACOVA_04958 0.16 -2.3 394,556 - BACOVA_04958 0.17 +1.8 394,559 + BACOVA_04958 0.17 +1.7 394,559 + BACOVA_04958 0.17 -0.4 394,560 - BACOVA_04958 0.17 +0.4 394,560 - BACOVA_04958 0.17 +1.4 394,560 - BACOVA_04958 0.17 -2.1 394,560 - BACOVA_04958 0.17 +0.7 394,560 - BACOVA_04958 0.17 -1.4 394,560 - BACOVA_04958 0.17 -1.9 394,560 - BACOVA_04958 0.17 +1.8 394,561 + BACOVA_04958 0.17 -1.3 394,579 + BACOVA_04958 0.18 -0.5 394,579 + BACOVA_04958 0.18 -0.0 394,583 + BACOVA_04958 0.19 +1.1 394,584 - BACOVA_04958 0.19 +1.2 394,591 + BACOVA_04958 0.19 +0.2 394,592 - BACOVA_04958 0.19 -2.0 394,603 - BACOVA_04958 0.20 +1.2 394,603 - BACOVA_04958 0.20 +1.0 394,636 + BACOVA_04958 0.23 +0.5 394,637 - BACOVA_04958 0.23 -2.5 394,638 + BACOVA_04958 0.23 -1.7 394,638 + BACOVA_04958 0.23 -0.2 394,646 + BACOVA_04958 0.24 -1.7 394,705 + BACOVA_04958 0.28 -1.5 394,706 - BACOVA_04958 0.28 +0.6 394,706 - BACOVA_04958 0.28 -0.3 394,708 + BACOVA_04958 0.28 +1.1 394,709 - BACOVA_04958 0.28 -1.2 394,728 + BACOVA_04958 0.30 -0.8 394,728 + BACOVA_04958 0.30 -1.2 394,729 - BACOVA_04958 0.30 +1.7 394,745 - BACOVA_04958 0.31 -0.2 394,760 + BACOVA_04958 0.32 -0.1 394,760 + BACOVA_04958 0.32 +0.8 394,760 + BACOVA_04958 0.32 -0.8 394,761 - BACOVA_04958 0.32 +0.6 394,763 + BACOVA_04958 0.32 +0.5 394,795 - BACOVA_04958 0.35 -0.3 394,801 + BACOVA_04958 0.35 -1.2 394,802 - BACOVA_04958 0.35 -0.0 394,802 - BACOVA_04958 0.35 -0.6 394,807 + BACOVA_04958 0.36 -2.2 394,903 + BACOVA_04958 0.43 -0.8 394,945 - BACOVA_04958 0.46 +0.3 394,949 + BACOVA_04958 0.47 -1.8 394,949 + BACOVA_04958 0.47 -2.0 394,953 + BACOVA_04958 0.47 -1.5 394,953 + BACOVA_04958 0.47 -1.8 394,954 - BACOVA_04958 0.47 +1.0 394,954 - BACOVA_04958 0.47 -0.6 394,963 + BACOVA_04958 0.48 -0.3 394,971 + BACOVA_04958 0.48 +0.3 394,976 + BACOVA_04958 0.49 -0.4 394,976 + BACOVA_04958 0.49 -0.8 394,989 - BACOVA_04958 0.50 -0.0 395,011 + BACOVA_04958 0.51 +0.6 395,017 + BACOVA_04958 0.52 -0.0 395,017 + BACOVA_04958 0.52 -0.8 395,063 - BACOVA_04958 0.55 +1.2 395,066 + BACOVA_04958 0.55 -1.4 395,066 + BACOVA_04958 0.55 -1.6 395,066 + BACOVA_04958 0.55 -1.4 395,067 - BACOVA_04958 0.56 -0.1 395,067 - BACOVA_04958 0.56 -0.0 395,136 + BACOVA_04958 0.61 -0.2 395,184 + BACOVA_04958 0.64 -3.1 395,184 + BACOVA_04958 0.64 +0.6 395,184 + BACOVA_04958 0.64 -0.8 395,185 - BACOVA_04958 0.65 +0.9 395,210 + BACOVA_04958 0.66 -0.2 395,236 + BACOVA_04958 0.68 -1.0 395,248 + BACOVA_04958 0.69 +1.6 395,315 + BACOVA_04958 0.74 +1.4 395,414 + BACOVA_04958 0.82 +0.6 395,416 + BACOVA_04958 0.82 -0.2 395,416 + BACOVA_04958 0.82 +1.9 395,416 + BACOVA_04958 0.82 +1.4 395,417 - BACOVA_04958 0.82 -1.0 395,417 - BACOVA_04958 0.82 +2.3 395,417 - BACOVA_04958 0.82 -0.0 395,417 - BACOVA_04958 0.82 -0.0 395,417 - BACOVA_04958 0.82 -0.6 395,441 + BACOVA_04958 0.84 -1.2 395,453 + BACOVA_04958 0.85 -1.2 395,530 + -1.0 395,555 - -0.0 395,560 - +0.3 395,577 + +0.6 395,577 + -1.9 395,672 + +2.5 395,681 + -1.9 395,690 - -2.1 395,774 - -0.0 395,778 - -2.0 395,778 - -1.2 395,778 - -2.4 395,778 - -1.0 395,814 + BACOVA_04959 0.29 -0.8 395,815 - BACOVA_04959 0.30 +0.1 395,896 + -1.2 395,928 - +0.4 395,958 + -0.0 395,959 - +3.4 395,959 - -1.4 395,978 - +1.5 395,993 - -0.1 396,039 + BACOVA_04960 0.14 -1.0 396,043 - BACOVA_04960 0.15 +0.6 396,043 - BACOVA_04960 0.15 -0.0 396,070 + BACOVA_04960 0.17 -0.0 396,070 + BACOVA_04960 0.17 -1.4 396,210 + BACOVA_04960 0.31 +1.2 396,213 + BACOVA_04960 0.31 -1.1 396,214 - BACOVA_04960 0.31 -3.0 396,214 - BACOVA_04960 0.31 -0.0 396,228 - BACOVA_04960 0.32 -2.8 396,285 + BACOVA_04960 0.38 +2.2 396,286 - BACOVA_04960 0.38 -0.4 396,286 - BACOVA_04960 0.38 +0.3 396,286 - BACOVA_04960 0.38 +0.0 396,295 + BACOVA_04960 0.39 +0.2 396,296 - BACOVA_04960 0.39 -0.8 396,302 - BACOVA_04960 0.40 +2.2 396,367 + BACOVA_04960 0.46 -1.4 396,368 - BACOVA_04960 0.46 +1.2 396,393 + BACOVA_04960 0.48 -0.8 396,464 - BACOVA_04960 0.55 +0.4 396,479 - BACOVA_04960 0.57 -1.0 396,487 + BACOVA_04960 0.57 +0.6 396,511 + BACOVA_04960 0.60 +1.6 396,596 + BACOVA_04960 0.68 -0.2 396,603 + BACOVA_04960 0.69 -1.4 396,603 + BACOVA_04960 0.69 +0.3 396,604 - BACOVA_04960 0.69 +1.4 396,642 + BACOVA_04960 0.72 -1.6 396,643 - BACOVA_04960 0.72 -1.8 396,647 - BACOVA_04960 0.73 -2.3 396,647 - BACOVA_04960 0.73 +2.8
Or see this region's nucleotide sequence