Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04793 and BACOVA_04794 overlap by 20 nucleotides BACOVA_04794 and BACOVA_04795 are separated by 200 nucleotides
BACOVA_04793: BACOVA_04793 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 145,787 to 148,090
_04793
BACOVA_04794: BACOVA_04794 - hypothetical protein, at 148,071 to 149,345
_04794
BACOVA_04795: BACOVA_04795 - site-specific recombinase, phage integrase family, at 149,546 to 150,604
_04795
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 147.071 kb on + strand, within BACOVA_04793 at 147.151 kb on + strand, within BACOVA_04793 at 147.151 kb on + strand, within BACOVA_04793 at 147.154 kb on + strand, within BACOVA_04793 at 147.171 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.212 kb on + strand, within BACOVA_04793 at 147.218 kb on + strand, within BACOVA_04793 at 147.218 kb on + strand, within BACOVA_04793 at 147.248 kb on + strand, within BACOVA_04793 at 147.277 kb on + strand, within BACOVA_04793 at 147.286 kb on + strand, within BACOVA_04793 at 147.302 kb on + strand, within BACOVA_04793 at 147.302 kb on + strand, within BACOVA_04793 at 147.341 kb on + strand, within BACOVA_04793 at 147.344 kb on + strand, within BACOVA_04793 at 147.356 kb on + strand, within BACOVA_04793 at 147.404 kb on + strand, within BACOVA_04793 at 147.484 kb on + strand, within BACOVA_04793 at 147.551 kb on + strand, within BACOVA_04793 at 147.589 kb on + strand, within BACOVA_04793 at 147.589 kb on + strand, within BACOVA_04793 at 147.599 kb on - strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.603 kb on + strand, within BACOVA_04793 at 147.604 kb on - strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.611 kb on + strand, within BACOVA_04793 at 147.640 kb on + strand, within BACOVA_04793 at 147.726 kb on + strand, within BACOVA_04793 at 147.726 kb on + strand, within BACOVA_04793 at 147.730 kb on + strand, within BACOVA_04793 at 147.730 kb on + strand, within BACOVA_04793 at 147.757 kb on + strand, within BACOVA_04793 at 147.763 kb on + strand, within BACOVA_04793 at 147.797 kb on - strand, within BACOVA_04793 at 147.808 kb on + strand, within BACOVA_04793 at 147.868 kb on + strand at 147.901 kb on + strand at 147.901 kb on + strand at 147.961 kb on - strand at 148.003 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.007 kb on + strand at 148.008 kb on - strand at 148.008 kb on - strand at 148.008 kb on - strand at 148.055 kb on + strand at 148.056 kb on - strand at 148.069 kb on + strand at 148.072 kb on + strand at 148.076 kb on + strand at 149.169 kb on + strand, within BACOVA_04794 at 149.366 kb on - strand at 149.366 kb on - strand at 149.371 kb on - strand at 149.371 kb on - strand at 149.382 kb on - strand at 149.441 kb on + strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.457 kb on + strand at 149.508 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.609 kb on + strand at 149.610 kb on - strand at 149.633 kb on + strand at 149.668 kb on + strand, within BACOVA_04795 at 149.668 kb on + strand, within BACOVA_04795 at 149.669 kb on - strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.681 kb on - strand, within BACOVA_04795 at 149.705 kb on + strand, within BACOVA_04795 at 149.766 kb on + strand, within BACOVA_04795 at 149.769 kb on - strand, within BACOVA_04795 at 149.796 kb on - strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.945 kb on - strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.968 kb on + strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.974 kb on + strand, within BACOVA_04795 at 149.975 kb on - strand, within BACOVA_04795 at 150.026 kb on - strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.036 kb on - strand, within BACOVA_04795 at 150.062 kb on + strand, within BACOVA_04795 at 150.063 kb on - strand, within BACOVA_04795 at 150.066 kb on - strand, within BACOVA_04795 at 150.072 kb on - strand, within BACOVA_04795 at 150.129 kb on - strand, within BACOVA_04795 at 150.211 kb on + strand, within BACOVA_04795 at 150.241 kb on - strand, within BACOVA_04795 at 150.246 kb on - strand, within BACOVA_04795 at 150.268 kb on - strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.275 kb on - strand, within BACOVA_04795 at 150.293 kb on - strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.320 kb on - strand, within BACOVA_04795 at 150.322 kb on - strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.326 kb on - strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 147,071 + BACOVA_04793 0.56 -0.8 147,151 + BACOVA_04793 0.59 -1.6 147,151 + BACOVA_04793 0.59 +1.6 147,154 + BACOVA_04793 0.59 +0.6 147,171 + BACOVA_04793 0.60 +0.6 147,212 + BACOVA_04793 0.62 -0.8 147,212 + BACOVA_04793 0.62 +0.7 147,212 + BACOVA_04793 0.62 -2.1 147,218 + BACOVA_04793 0.62 +0.3 147,218 + BACOVA_04793 0.62 -0.9 147,248 + BACOVA_04793 0.63 -0.9 147,277 + BACOVA_04793 0.65 -1.7 147,286 + BACOVA_04793 0.65 -2.9 147,302 + BACOVA_04793 0.66 -1.6 147,302 + BACOVA_04793 0.66 +0.1 147,341 + BACOVA_04793 0.67 -0.1 147,344 + BACOVA_04793 0.68 -0.4 147,356 + BACOVA_04793 0.68 -0.9 147,404 + BACOVA_04793 0.70 -1.9 147,484 + BACOVA_04793 0.74 -1.0 147,551 + BACOVA_04793 0.77 +1.3 147,589 + BACOVA_04793 0.78 +2.4 147,589 + BACOVA_04793 0.78 +0.6 147,599 - BACOVA_04793 0.79 -0.0 147,603 + BACOVA_04793 0.79 -2.6 147,603 + BACOVA_04793 0.79 -1.4 147,603 + BACOVA_04793 0.79 +2.7 147,604 - BACOVA_04793 0.79 +0.6 147,611 + BACOVA_04793 0.79 +1.4 147,611 + BACOVA_04793 0.79 -1.8 147,611 + BACOVA_04793 0.79 -1.2 147,640 + BACOVA_04793 0.80 -1.4 147,726 + BACOVA_04793 0.84 +0.9 147,726 + BACOVA_04793 0.84 -1.1 147,730 + BACOVA_04793 0.84 -0.3 147,730 + BACOVA_04793 0.84 -0.6 147,757 + BACOVA_04793 0.86 +1.1 147,763 + BACOVA_04793 0.86 -1.2 147,797 - BACOVA_04793 0.87 -0.8 147,808 + BACOVA_04793 0.88 +1.2 147,868 + -1.2 147,901 + -0.7 147,901 + -3.2 147,961 - -1.2 148,003 + +1.9 148,007 + +0.1 148,007 + -0.8 148,007 + -0.8 148,007 + -0.4 148,008 - -0.9 148,008 - -2.5 148,008 - -0.8 148,055 + +1.1 148,056 - +1.6 148,069 + -2.4 148,072 + -1.7 148,076 + -0.7 149,169 + BACOVA_04794 0.86 +2.1 149,366 - +0.7 149,366 - -1.4 149,371 - -1.3 149,371 - -0.8 149,382 - +1.0 149,441 + -1.0 149,442 - -0.0 149,442 - -0.9 149,442 - +0.1 149,457 + -1.0 149,508 - -0.4 149,541 - -1.3 149,541 - -1.9 149,541 - +2.6 149,609 + +0.7 149,610 - -3.0 149,633 + +0.1 149,668 + BACOVA_04795 0.12 +0.1 149,668 + BACOVA_04795 0.12 +3.0 149,669 - BACOVA_04795 0.12 +0.1 149,672 + BACOVA_04795 0.12 +3.6 149,672 + BACOVA_04795 0.12 -2.3 149,672 + BACOVA_04795 0.12 -1.2 149,673 - BACOVA_04795 0.12 -0.8 149,673 - BACOVA_04795 0.12 -2.3 149,673 - BACOVA_04795 0.12 -0.6 149,676 + BACOVA_04795 0.12 -1.8 149,676 + BACOVA_04795 0.12 -1.2 149,676 + BACOVA_04795 0.12 +0.3 149,676 + BACOVA_04795 0.12 +0.5 149,676 + BACOVA_04795 0.12 -1.8 149,676 + BACOVA_04795 0.12 +1.1 149,676 + BACOVA_04795 0.12 -3.0 149,676 + BACOVA_04795 0.12 -0.8 149,676 + BACOVA_04795 0.12 +0.6 149,677 - BACOVA_04795 0.12 -0.8 149,677 - BACOVA_04795 0.12 +2.7 149,677 - BACOVA_04795 0.12 +2.0 149,677 - BACOVA_04795 0.12 +0.6 149,681 - BACOVA_04795 0.13 +3.1 149,705 + BACOVA_04795 0.15 -1.6 149,766 + BACOVA_04795 0.21 +0.8 149,769 - BACOVA_04795 0.21 +1.3 149,796 - BACOVA_04795 0.24 -1.2 149,809 + BACOVA_04795 0.25 -2.4 149,809 + BACOVA_04795 0.25 -0.6 149,929 + BACOVA_04795 0.36 +2.6 149,929 + BACOVA_04795 0.36 -0.9 149,945 - BACOVA_04795 0.38 -1.1 149,954 + BACOVA_04795 0.39 +0.6 149,954 + BACOVA_04795 0.39 -0.8 149,968 + BACOVA_04795 0.40 -0.0 149,969 - BACOVA_04795 0.40 +0.7 149,969 - BACOVA_04795 0.40 -1.3 149,969 - BACOVA_04795 0.40 +1.6 149,969 - BACOVA_04795 0.40 +1.1 149,974 + BACOVA_04795 0.40 +2.8 149,975 - BACOVA_04795 0.41 +1.2 150,026 - BACOVA_04795 0.45 -1.5 150,035 + BACOVA_04795 0.46 -1.2 150,035 + BACOVA_04795 0.46 -1.2 150,036 - BACOVA_04795 0.46 -1.5 150,062 + BACOVA_04795 0.49 +1.4 150,063 - BACOVA_04795 0.49 -1.8 150,066 - BACOVA_04795 0.49 +0.4 150,072 - BACOVA_04795 0.50 -0.2 150,129 - BACOVA_04795 0.55 +0.8 150,211 + BACOVA_04795 0.63 +1.4 150,241 - BACOVA_04795 0.66 -0.2 150,246 - BACOVA_04795 0.66 -1.5 150,268 - BACOVA_04795 0.68 +0.4 150,274 + BACOVA_04795 0.69 +1.0 150,274 + BACOVA_04795 0.69 -1.8 150,274 + BACOVA_04795 0.69 +1.6 150,275 - BACOVA_04795 0.69 -2.7 150,293 - BACOVA_04795 0.71 -0.0 150,319 + BACOVA_04795 0.73 +0.7 150,319 + BACOVA_04795 0.73 -3.4 150,320 - BACOVA_04795 0.73 -1.6 150,322 - BACOVA_04795 0.73 -0.6 150,325 + BACOVA_04795 0.74 -0.4 150,325 + BACOVA_04795 0.74 +0.2 150,325 + BACOVA_04795 0.74 -0.3 150,326 - BACOVA_04795 0.74 +0.9 150,340 + BACOVA_04795 0.75 -3.3 150,340 + BACOVA_04795 0.75 +0.7
Or see this region's nucleotide sequence