Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04767 and BACOVA_04768 overlap by 4 nucleotides BACOVA_04768 and BACOVA_04769 are separated by 20 nucleotides BACOVA_04769 and BACOVA_04770 are separated by 11 nucleotides
BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074
_04767
BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922
_04768
BACOVA_04769: BACOVA_04769 - DNA (cytosine-5-)-methyltransferase, at 122,943 to 123,746
_04769
BACOVA_04770: BACOVA_04770 - conjugative transposon TraM protein, at 123,758 to 124,933
_04770
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 122.304 kb on + strand, within BACOVA_04768 at 122.420 kb on + strand, within BACOVA_04768 at 122.424 kb on + strand, within BACOVA_04768 at 122.425 kb on - strand, within BACOVA_04768 at 122.552 kb on + strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.628 kb on - strand, within BACOVA_04768 at 122.760 kb on + strand, within BACOVA_04768 at 122.840 kb on + strand at 122.840 kb on + strand at 122.840 kb on + strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.904 kb on + strand at 122.905 kb on - strand at 122.905 kb on - strand at 122.909 kb on - strand at 123.157 kb on + strand, within BACOVA_04769 at 123.162 kb on + strand, within BACOVA_04769 at 123.193 kb on + strand, within BACOVA_04769 at 123.370 kb on + strand, within BACOVA_04769 at 123.372 kb on + strand, within BACOVA_04769 at 123.710 kb on + strand at 123.719 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.724 kb on + strand at 123.725 kb on - strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.829 kb on + strand at 123.996 kb on + strand, within BACOVA_04770 at 123.996 kb on + strand, within BACOVA_04770 at 124.119 kb on + strand, within BACOVA_04770 at 124.275 kb on + strand, within BACOVA_04770 at 124.292 kb on + strand, within BACOVA_04770 at 124.436 kb on + strand, within BACOVA_04770 at 124.437 kb on - strand, within BACOVA_04770 at 124.599 kb on + strand, within BACOVA_04770 at 124.599 kb on + strand, within BACOVA_04770 at 124.600 kb on - strand, within BACOVA_04770 at 124.634 kb on + strand, within BACOVA_04770 at 124.634 kb on + strand, within BACOVA_04770 at 124.666 kb on + strand, within BACOVA_04770 at 124.720 kb on + strand, within BACOVA_04770
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 122,304 + BACOVA_04768 0.27 -0.4 122,420 + BACOVA_04768 0.41 -1.3 122,424 + BACOVA_04768 0.41 -0.9 122,425 - BACOVA_04768 0.42 +0.6 122,552 + BACOVA_04768 0.56 +0.4 122,616 - BACOVA_04768 0.64 -0.0 122,616 - BACOVA_04768 0.64 -1.3 122,627 + BACOVA_04768 0.65 -0.4 122,627 + BACOVA_04768 0.65 -2.5 122,628 - BACOVA_04768 0.65 -0.0 122,760 + BACOVA_04768 0.81 -2.5 122,840 + -1.0 122,840 + +1.6 122,840 + -1.8 122,841 - +0.6 122,841 - -0.0 122,841 - -1.6 122,841 - -2.1 122,904 + -2.2 122,905 - -1.8 122,905 - -1.4 122,909 - +1.6 123,157 + BACOVA_04769 0.27 -0.8 123,162 + BACOVA_04769 0.27 -1.8 123,193 + BACOVA_04769 0.31 -3.0 123,370 + BACOVA_04769 0.53 +2.9 123,372 + BACOVA_04769 0.53 +1.6 123,710 + -1.0 123,719 + -0.9 123,722 + +2.8 123,722 + -0.8 123,722 + -1.6 123,722 + +2.4 123,724 + +1.4 123,725 - -0.0 123,726 + -1.8 123,726 + -0.3 123,726 + +1.4 123,812 + -2.9 123,812 + -1.4 123,812 + +0.7 123,829 + -0.3 123,996 + BACOVA_04770 0.20 -0.1 123,996 + BACOVA_04770 0.20 +1.1 124,119 + BACOVA_04770 0.31 -1.4 124,275 + BACOVA_04770 0.44 -0.3 124,292 + BACOVA_04770 0.45 +0.8 124,436 + BACOVA_04770 0.58 -0.3 124,437 - BACOVA_04770 0.58 +0.6 124,599 + BACOVA_04770 0.72 +0.5 124,599 + BACOVA_04770 0.72 -0.4 124,600 - BACOVA_04770 0.72 -0.4 124,634 + BACOVA_04770 0.74 +0.4 124,634 + BACOVA_04770 0.74 -3.4 124,666 + BACOVA_04770 0.77 +1.0 124,720 + BACOVA_04770 0.82 -0.2
Or see this region's nucleotide sequence