Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04664 and BACOVA_04665 are separated by 145 nucleotides BACOVA_04665 and BACOVA_04666 are separated by 72 nucleotides BACOVA_04666 and BACOVA_04667 are separated by 38 nucleotides BACOVA_04667 and BACOVA_04668 are separated by 58 nucleotides BACOVA_04668 and BACOVA_04669 overlap by 4 nucleotides
BACOVA_04664: BACOVA_04664 - hypothetical protein, at 46,917 to 47,045
_04664
BACOVA_04665: BACOVA_04665 - hypothetical protein, at 47,191 to 47,706
_04665
BACOVA_04666: BACOVA_04666 - hypothetical protein, at 47,779 to 47,892
_04666
BACOVA_04667: BACOVA_04667 - hypothetical protein, at 47,931 to 48,101
_04667
BACOVA_04668: BACOVA_04668 - bacterial mobilization protein MobC, at 48,160 to 48,549
_04668
BACOVA_04669: BACOVA_04669 - relaxase/mobilization nuclease domain protein, at 48,546 to 49,469
_04669
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.082 kb on - strand at 47.110 kb on - strand at 47.146 kb on - strand at 47.146 kb on - strand at 47.344 kb on - strand, within BACOVA_04665 at 47.344 kb on - strand, within BACOVA_04665 at 47.379 kb on - strand, within BACOVA_04665 at 47.470 kb on - strand, within BACOVA_04665 at 47.507 kb on - strand, within BACOVA_04665 at 47.512 kb on - strand, within BACOVA_04665 at 47.519 kb on - strand, within BACOVA_04665 at 47.628 kb on - strand, within BACOVA_04665 at 47.628 kb on - strand, within BACOVA_04665 at 47.672 kb on - strand at 47.795 kb on - strand, within BACOVA_04666 at 47.875 kb on - strand, within BACOVA_04666 at 47.879 kb on - strand, within BACOVA_04666 at 47.895 kb on - strand at 47.914 kb on - strand at 47.914 kb on - strand at 47.914 kb on - strand at 47.914 kb on - strand at 47.998 kb on - strand, within BACOVA_04667 at 47.999 kb on - strand, within BACOVA_04667 at 48.035 kb on - strand, within BACOVA_04667 at 48.037 kb on - strand, within BACOVA_04667 at 48.037 kb on - strand, within BACOVA_04667 at 48.048 kb on - strand, within BACOVA_04667 at 48.109 kb on - strand at 48.184 kb on - strand at 48.188 kb on + strand at 48.295 kb on + strand, within BACOVA_04668 at 48.299 kb on + strand, within BACOVA_04668 at 48.300 kb on - strand, within BACOVA_04668 at 48.357 kb on + strand, within BACOVA_04668 at 48.358 kb on - strand, within BACOVA_04668 at 48.408 kb on + strand, within BACOVA_04668 at 48.420 kb on - strand, within BACOVA_04668 at 48.432 kb on + strand, within BACOVA_04668 at 48.486 kb on - strand, within BACOVA_04668 at 48.545 kb on + strand at 48.545 kb on + strand at 48.546 kb on - strand at 48.546 kb on - strand at 48.546 kb on - strand at 48.550 kb on + strand at 48.592 kb on - strand at 48.667 kb on + strand, within BACOVA_04669 at 48.668 kb on - strand, within BACOVA_04669 at 48.668 kb on - strand, within BACOVA_04669 at 48.670 kb on + strand, within BACOVA_04669 at 48.671 kb on - strand, within BACOVA_04669 at 48.671 kb on - strand, within BACOVA_04669 at 48.671 kb on - strand, within BACOVA_04669 at 48.729 kb on - strand, within BACOVA_04669 at 48.729 kb on - strand, within BACOVA_04669 at 48.791 kb on - strand, within BACOVA_04669 at 48.802 kb on - strand, within BACOVA_04669 at 48.803 kb on + strand, within BACOVA_04669 at 48.834 kb on + strand, within BACOVA_04669 at 48.835 kb on - strand, within BACOVA_04669 at 48.835 kb on - strand, within BACOVA_04669 at 48.835 kb on - strand, within BACOVA_04669 at 48.835 kb on - strand, within BACOVA_04669 at 48.872 kb on + strand, within BACOVA_04669 at 48.879 kb on - strand, within BACOVA_04669 at 48.951 kb on - strand, within BACOVA_04669 at 48.966 kb on - strand, within BACOVA_04669 at 49.056 kb on + strand, within BACOVA_04669 at 49.056 kb on + strand, within BACOVA_04669 at 49.057 kb on - strand, within BACOVA_04669 at 49.057 kb on - strand, within BACOVA_04669
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 47,082 - +0.6 47,110 - -0.2 47,146 - +0.8 47,146 - -0.8 47,344 - BACOVA_04665 0.30 +1.1 47,344 - BACOVA_04665 0.30 +0.8 47,379 - BACOVA_04665 0.36 -1.1 47,470 - BACOVA_04665 0.54 -1.3 47,507 - BACOVA_04665 0.61 -0.4 47,512 - BACOVA_04665 0.62 -0.4 47,519 - BACOVA_04665 0.64 -1.1 47,628 - BACOVA_04665 0.85 -1.8 47,628 - BACOVA_04665 0.85 +2.2 47,672 - -0.8 47,795 - BACOVA_04666 0.14 +0.7 47,875 - BACOVA_04666 0.84 +0.9 47,879 - BACOVA_04666 0.88 +1.0 47,895 - -1.0 47,914 - +0.8 47,914 - +2.0 47,914 - +1.4 47,914 - -1.8 47,998 - BACOVA_04667 0.39 -0.8 47,999 - BACOVA_04667 0.40 -1.6 48,035 - BACOVA_04667 0.61 -0.0 48,037 - BACOVA_04667 0.62 +1.6 48,037 - BACOVA_04667 0.62 +0.6 48,048 - BACOVA_04667 0.68 +1.7 48,109 - -1.0 48,184 - +2.8 48,188 + -0.4 48,295 + BACOVA_04668 0.35 +0.6 48,299 + BACOVA_04668 0.36 +0.6 48,300 - BACOVA_04668 0.36 +2.9 48,357 + BACOVA_04668 0.51 +0.7 48,358 - BACOVA_04668 0.51 -2.3 48,408 + BACOVA_04668 0.64 -0.3 48,420 - BACOVA_04668 0.67 -0.0 48,432 + BACOVA_04668 0.70 -0.8 48,486 - BACOVA_04668 0.84 -0.8 48,545 + -0.8 48,545 + -1.0 48,546 - -0.0 48,546 - -1.1 48,546 - -0.8 48,550 + -0.6 48,592 - -1.6 48,667 + BACOVA_04669 0.13 +1.0 48,668 - BACOVA_04669 0.13 +1.3 48,668 - BACOVA_04669 0.13 -1.9 48,670 + BACOVA_04669 0.13 -0.6 48,671 - BACOVA_04669 0.14 -2.1 48,671 - BACOVA_04669 0.14 -2.8 48,671 - BACOVA_04669 0.14 +0.3 48,729 - BACOVA_04669 0.20 -0.2 48,729 - BACOVA_04669 0.20 +1.4 48,791 - BACOVA_04669 0.27 +1.3 48,802 - BACOVA_04669 0.28 +1.6 48,803 + BACOVA_04669 0.28 +1.6 48,834 + BACOVA_04669 0.31 -0.0 48,835 - BACOVA_04669 0.31 -2.9 48,835 - BACOVA_04669 0.31 -0.8 48,835 - BACOVA_04669 0.31 +1.2 48,835 - BACOVA_04669 0.31 +1.3 48,872 + BACOVA_04669 0.35 +1.6 48,879 - BACOVA_04669 0.36 +3.2 48,951 - BACOVA_04669 0.44 -0.4 48,966 - BACOVA_04669 0.45 -1.4 49,056 + BACOVA_04669 0.55 -0.0 49,056 + BACOVA_04669 0.55 +3.0 49,057 - BACOVA_04669 0.55 +0.3 49,057 - BACOVA_04669 0.55 +1.8
Or see this region's nucleotide sequence