Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04619

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04618 and BACOVA_04619 are separated by 57 nucleotidesBACOVA_04619 and BACOVA_04620 are separated by 415 nucleotidesBACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723 _04618 BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855 _04619 BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423 _04620 BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780 _04621 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 15.783 kb on + strand, within BACOVA_04618at 15.815 kb on + strand, within BACOVA_04618at 15.829 kb on + strand, within BACOVA_04618at 15.829 kb on + strand, within BACOVA_04618at 15.834 kb on + strand, within BACOVA_04618at 15.853 kb on + strand, within BACOVA_04618at 15.853 kb on + strand, within BACOVA_04618at 15.854 kb on - strand, within BACOVA_04618at 15.854 kb on - strand, within BACOVA_04618at 15.896 kb on - strand, within BACOVA_04618at 15.903 kb on - strand, within BACOVA_04618at 15.911 kb on - strand, within BACOVA_04618at 15.963 kb on - strand, within BACOVA_04618at 15.963 kb on - strand, within BACOVA_04618at 15.964 kb on + strand, within BACOVA_04618at 15.966 kb on + strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 16.032 kb on - strand, within BACOVA_04618at 16.037 kb on + strand, within BACOVA_04618at 16.037 kb on + strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.085 kb on + strand, within BACOVA_04618at 16.103 kb on + strand, within BACOVA_04618at 16.135 kb on + strand, within BACOVA_04618at 16.142 kb on - strand, within BACOVA_04618at 16.147 kb on - strand, within BACOVA_04618at 16.158 kb on + strand, within BACOVA_04618at 16.159 kb on - strand, within BACOVA_04618at 16.193 kb on + strand, within BACOVA_04618at 16.197 kb on + strand, within BACOVA_04618at 16.207 kb on + strand, within BACOVA_04618at 16.295 kb on - strand, within BACOVA_04618at 16.324 kb on + strand, within BACOVA_04618at 16.563 kb on + strand, within BACOVA_04618at 16.594 kb on + strand, within BACOVA_04618at 16.594 kb on + strand, within BACOVA_04618at 16.612 kb on - strandat 16.613 kb on + strandat 16.614 kb on - strandat 16.614 kb on - strandat 16.616 kb on + strandat 16.617 kb on - strandat 16.654 kb on + strandat 16.660 kb on + strandat 16.660 kb on + strandat 16.660 kb on + strandat 16.661 kb on - strandat 16.686 kb on + strandat 16.686 kb on + strandat 16.687 kb on - strandat 16.687 kb on - strandat 16.696 kb on + strandat 16.697 kb on - strandat 16.702 kb on + strandat 16.703 kb on - strandat 16.703 kb on - strandat 16.703 kb on - strandat 16.919 kb on + strandat 16.933 kb on + strandat 16.933 kb on + strandat 17.020 kb on + strandat 17.021 kb on - strandat 17.024 kb on + strandat 17.082 kb on + strandat 17.153 kb on - strandat 17.162 kb on - strandat 17.162 kb on - strandat 17.164 kb on - strandat 17.334 kb on - strand, within BACOVA_04620at 17.479 kb on - strandat 17.530 kb on - strandat 17.535 kb on + strandat 17.597 kb on + strandat 17.597 kb on + strandat 17.598 kb on - strandat 17.603 kb on + strandat 17.622 kb on + strandat 17.623 kb on - strandat 17.632 kb on + strandat 17.670 kb on + strand, within BACOVA_04621at 17.680 kb on - strand, within BACOVA_04621at 17.692 kb on - strand, within BACOVA_04621at 17.701 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.729 kb on - strand, within BACOVA_04621at 17.730 kb on + strand, within BACOVA_04621at 17.730 kb on + strand, within BACOVA_04621at 17.750 kb on - strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.774 kb on + strand, within BACOVA_04621at 17.798 kb on + strand, within BACOVA_04621

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
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15,783 + BACOVA_04618 0.23 -2.0
15,815 + BACOVA_04618 0.26 -0.3
15,829 + BACOVA_04618 0.27 -0.8
15,829 + BACOVA_04618 0.27 -0.3
15,834 + BACOVA_04618 0.27 -0.1
15,853 + BACOVA_04618 0.29 -2.5
15,853 + BACOVA_04618 0.29 -0.3
15,854 - BACOVA_04618 0.29 +0.2
15,854 - BACOVA_04618 0.29 -0.4
15,896 - BACOVA_04618 0.32 +0.1
15,903 - BACOVA_04618 0.33 -3.0
15,911 - BACOVA_04618 0.33 +0.2
15,963 - BACOVA_04618 0.38 +0.2
15,963 - BACOVA_04618 0.38 -2.1
15,964 + BACOVA_04618 0.38 -0.8
15,966 + BACOVA_04618 0.38 +0.4
15,967 - BACOVA_04618 0.38 +3.3
15,967 - BACOVA_04618 0.38 -0.4
15,967 - BACOVA_04618 0.38 -1.4
15,967 - BACOVA_04618 0.38 -1.8
16,032 - BACOVA_04618 0.43 -1.4
16,037 + BACOVA_04618 0.44 +0.2
16,037 + BACOVA_04618 0.44 -2.0
16,038 - BACOVA_04618 0.44 -3.5
16,038 - BACOVA_04618 0.44 +0.9
16,038 - BACOVA_04618 0.44 -1.9
16,085 + BACOVA_04618 0.48 -2.5
16,103 + BACOVA_04618 0.49 -3.1
16,135 + BACOVA_04618 0.52 -1.9
16,142 - BACOVA_04618 0.52 +1.2
16,147 - BACOVA_04618 0.53 -1.0
16,158 + BACOVA_04618 0.54 -1.8
16,159 - BACOVA_04618 0.54 +1.8
16,193 + BACOVA_04618 0.57 -1.3
16,197 + BACOVA_04618 0.57 -0.8
16,207 + BACOVA_04618 0.58 -1.6
16,295 - BACOVA_04618 0.65 +1.0
16,324 + BACOVA_04618 0.67 -1.3
16,563 + BACOVA_04618 0.87 -0.8
16,594 + BACOVA_04618 0.89 -1.2
16,594 + BACOVA_04618 0.89 +0.2
16,612 - -2.5
16,613 + +0.6
16,614 - +2.7
16,614 - -1.6
16,616 + -1.4
16,617 - -1.4
16,654 + +0.6
16,660 + +0.4
16,660 + +1.0
16,660 + -1.5
16,661 - -0.8
16,686 + -0.0
16,686 + -0.0
16,687 - -3.4
16,687 - -0.8
16,696 + +0.1
16,697 - -0.8
16,702 + +1.0
16,703 - +0.6
16,703 - -1.0
16,703 - -2.8
16,919 + +2.2
16,933 + +0.7
16,933 + -0.8
17,020 + -2.3
17,021 - -0.4
17,024 + +0.4
17,082 + +1.0
17,153 - +0.6
17,162 - -2.3
17,162 - +0.2
17,164 - +1.2
17,334 - BACOVA_04620 0.41 -3.6
17,479 - -2.8
17,530 - -0.7
17,535 + -1.4
17,597 + -1.6
17,597 + -1.4
17,598 - +1.6
17,603 + +1.0
17,622 + -0.3
17,623 - +0.5
17,632 + -0.4
17,670 + BACOVA_04621 0.13 +2.1
17,680 - BACOVA_04621 0.14 +0.5
17,692 - BACOVA_04621 0.15 +3.0
17,701 - BACOVA_04621 0.15 -1.4
17,720 - BACOVA_04621 0.17 +0.6
17,720 - BACOVA_04621 0.17 -0.3
17,720 - BACOVA_04621 0.17 -2.4
17,728 + BACOVA_04621 0.17 -0.1
17,728 + BACOVA_04621 0.17 +0.3
17,728 + BACOVA_04621 0.17 -1.1
17,729 - BACOVA_04621 0.17 +1.1
17,730 + BACOVA_04621 0.18 -2.4
17,730 + BACOVA_04621 0.18 +1.4
17,750 - BACOVA_04621 0.19 -1.6
17,766 + BACOVA_04621 0.20 +2.3
17,766 + BACOVA_04621 0.20 -2.4
17,766 + BACOVA_04621 0.20 -0.0
17,774 + BACOVA_04621 0.21 -0.1
17,798 + BACOVA_04621 0.23 -3.3

Or see this region's nucleotide sequence