Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04362 and BACOVA_04363 are separated by 298 nucleotides BACOVA_04363 and BACOVA_04364 are separated by 7 nucleotides BACOVA_04364 and BACOVA_04365 overlap by 4 nucleotides BACOVA_04365 and BACOVA_04366 overlap by 41 nucleotides BACOVA_04366 and BACOVA_04367 are separated by 160 nucleotides
BACOVA_04362: BACOVA_04362 - TonB-linked outer membrane protein, SusC/RagA family, at 256,146 to 259,352
_04362
BACOVA_04363: BACOVA_04363 - hypothetical protein, at 259,651 to 260,199
_04363
BACOVA_04364: BACOVA_04364 - hypothetical protein, at 260,207 to 260,827
_04364
BACOVA_04365: BACOVA_04365 - hypothetical protein, at 260,824 to 260,973
_04365
BACOVA_04366: BACOVA_04366 - hypothetical protein, at 260,933 to 261,037
_04366
BACOVA_04367: BACOVA_04367 - hypothetical protein, at 261,198 to 261,446
_04367
Position (kb) 259
260
261 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 258.683 kb on + strand, within BACOVA_04362 at 258.684 kb on - strand, within BACOVA_04362 at 258.693 kb on - strand, within BACOVA_04362 at 258.790 kb on - strand, within BACOVA_04362 at 258.805 kb on + strand, within BACOVA_04362 at 258.806 kb on - strand, within BACOVA_04362 at 258.807 kb on + strand, within BACOVA_04362 at 258.807 kb on + strand, within BACOVA_04362 at 258.891 kb on + strand, within BACOVA_04362 at 258.892 kb on - strand, within BACOVA_04362 at 258.918 kb on + strand, within BACOVA_04362 at 258.919 kb on - strand, within BACOVA_04362 at 258.919 kb on - strand, within BACOVA_04362 at 258.922 kb on - strand, within BACOVA_04362 at 258.932 kb on + strand, within BACOVA_04362 at 258.980 kb on + strand, within BACOVA_04362 at 258.980 kb on + strand, within BACOVA_04362 at 259.096 kb on - strand at 259.118 kb on + strand at 259.185 kb on - strand at 259.199 kb on + strand at 259.200 kb on - strand at 259.200 kb on - strand at 259.200 kb on - strand at 259.215 kb on + strand at 259.215 kb on + strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.232 kb on + strand at 259.324 kb on - strand at 259.365 kb on + strand at 259.410 kb on + strand at 259.434 kb on + strand at 259.435 kb on - strand at 259.436 kb on + strand at 259.450 kb on - strand at 259.454 kb on - strand at 259.458 kb on - strand at 259.495 kb on - strand at 259.528 kb on + strand at 259.528 kb on + strand at 259.529 kb on - strand at 259.590 kb on - strand at 259.620 kb on - strand at 259.620 kb on - strand at 259.621 kb on + strand at 259.622 kb on - strand at 259.622 kb on - strand at 259.647 kb on + strand at 259.648 kb on - strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.650 kb on - strand at 259.650 kb on - strand at 259.653 kb on - strand at 259.654 kb on + strand at 259.654 kb on + strand at 259.655 kb on - strand at 259.655 kb on - strand at 259.663 kb on + strand at 259.663 kb on + strand at 259.666 kb on - strand at 259.688 kb on + strand at 259.688 kb on + strand at 259.701 kb on + strand at 259.702 kb on - strand at 259.702 kb on - strand at 259.711 kb on + strand, within BACOVA_04363 at 259.892 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.910 kb on + strand, within BACOVA_04363 at 259.926 kb on + strand, within BACOVA_04363 at 259.927 kb on - strand, within BACOVA_04363 at 260.037 kb on + strand, within BACOVA_04363 at 260.038 kb on - strand, within BACOVA_04363 at 260.052 kb on - strand, within BACOVA_04363 at 260.061 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.067 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.117 kb on + strand, within BACOVA_04363 at 260.216 kb on + strand at 260.220 kb on + strand at 260.220 kb on + strand at 260.221 kb on - strand at 260.221 kb on - strand at 260.227 kb on + strand at 260.231 kb on + strand at 260.260 kb on + strand at 260.267 kb on - strand at 260.273 kb on - strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.378 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.451 kb on - strand, within BACOVA_04364 at 260.470 kb on + strand, within BACOVA_04364 at 260.489 kb on + strand, within BACOVA_04364 at 260.511 kb on - strand, within BACOVA_04364 at 260.515 kb on + strand, within BACOVA_04364 at 260.516 kb on - strand, within BACOVA_04364 at 260.518 kb on - strand, within BACOVA_04364 at 260.537 kb on + strand, within BACOVA_04364 at 260.542 kb on - strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.584 kb on + strand, within BACOVA_04364 at 260.595 kb on - strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.636 kb on - strand, within BACOVA_04364 at 260.706 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.714 kb on - strand, within BACOVA_04364 at 260.717 kb on - strand, within BACOVA_04364 at 260.727 kb on - strand, within BACOVA_04364 at 260.811 kb on + strand at 260.811 kb on + strand at 260.811 kb on + strand at 260.812 kb on - strand at 260.812 kb on - strand at 260.814 kb on - strand at 260.829 kb on + strand at 260.863 kb on + strand, within BACOVA_04365 at 260.934 kb on + strand at 260.935 kb on - strand at 260.974 kb on + strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 261.001 kb on - strand, within BACOVA_04366 at 261.052 kb on + strand at 261.061 kb on - strand at 261.176 kb on + strand at 261.177 kb on - strand at 261.186 kb on + strand at 261.186 kb on + strand at 261.187 kb on - strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.189 kb on - strand at 261.189 kb on - strand at 261.190 kb on + strand at 261.191 kb on - strand at 261.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 258,683 + BACOVA_04362 0.79 -0.5 258,684 - BACOVA_04362 0.79 +1.3 258,693 - BACOVA_04362 0.79 +0.0 258,790 - BACOVA_04362 0.82 +3.1 258,805 + BACOVA_04362 0.83 +1.3 258,806 - BACOVA_04362 0.83 +2.8 258,807 + BACOVA_04362 0.83 -1.5 258,807 + BACOVA_04362 0.83 -1.4 258,891 + BACOVA_04362 0.86 -1.5 258,892 - BACOVA_04362 0.86 -0.9 258,918 + BACOVA_04362 0.86 -1.1 258,919 - BACOVA_04362 0.86 -2.4 258,919 - BACOVA_04362 0.86 -2.4 258,922 - BACOVA_04362 0.87 +2.1 258,932 + BACOVA_04362 0.87 -1.0 258,980 + BACOVA_04362 0.88 -0.5 258,980 + BACOVA_04362 0.88 -1.8 259,096 - -0.6 259,118 + -1.9 259,185 - +0.3 259,199 + +0.1 259,200 - -0.7 259,200 - -0.8 259,200 - -1.8 259,215 + +2.0 259,215 + +0.3 259,216 - +0.9 259,216 - +0.7 259,216 - +0.9 259,232 + -1.9 259,324 - -3.3 259,365 + +0.9 259,410 + -0.6 259,434 + +4.1 259,435 - -1.3 259,436 + +2.5 259,450 - -1.6 259,454 - +1.5 259,458 - -1.6 259,495 - -1.0 259,528 + +1.8 259,528 + -1.6 259,529 - -2.5 259,590 - -0.3 259,620 - -1.4 259,620 - -1.6 259,621 + +2.1 259,622 - -0.2 259,622 - -1.5 259,647 + +3.0 259,648 - -2.1 259,649 + -1.2 259,649 + -0.8 259,649 + -1.8 259,649 + -1.3 259,650 - +1.4 259,650 - -0.1 259,653 - +1.2 259,654 + -1.8 259,654 + +1.8 259,655 - +2.3 259,655 - -0.8 259,663 + -0.0 259,663 + -1.9 259,666 - +2.3 259,688 + +0.5 259,688 + +3.6 259,701 + +3.1 259,702 - -0.0 259,702 - -1.9 259,711 + BACOVA_04363 0.11 -1.4 259,892 - BACOVA_04363 0.44 -1.0 259,909 - BACOVA_04363 0.47 +0.1 259,909 - BACOVA_04363 0.47 -0.9 259,910 + BACOVA_04363 0.47 -4.2 259,926 + BACOVA_04363 0.50 -3.7 259,927 - BACOVA_04363 0.50 +1.5 260,037 + BACOVA_04363 0.70 -0.3 260,038 - BACOVA_04363 0.70 -1.6 260,052 - BACOVA_04363 0.73 +2.8 260,061 + BACOVA_04363 0.75 +0.5 260,066 + BACOVA_04363 0.76 +1.7 260,066 + BACOVA_04363 0.76 +0.0 260,067 - BACOVA_04363 0.76 +3.1 260,069 - BACOVA_04363 0.76 -1.5 260,069 - BACOVA_04363 0.76 +0.8 260,073 + BACOVA_04363 0.77 -1.0 260,073 + BACOVA_04363 0.77 +2.0 260,117 + BACOVA_04363 0.85 +0.2 260,216 + +0.5 260,220 + +0.5 260,220 + -1.4 260,221 - +1.9 260,221 - +1.0 260,227 + +1.4 260,231 + +0.2 260,260 + -1.8 260,267 - -1.2 260,273 - BACOVA_04364 0.11 -0.8 260,282 + BACOVA_04364 0.12 +1.5 260,282 + BACOVA_04364 0.12 +3.1 260,290 + BACOVA_04364 0.13 +2.1 260,290 + BACOVA_04364 0.13 -0.8 260,378 + BACOVA_04364 0.28 +0.6 260,435 + BACOVA_04364 0.37 +2.1 260,435 + BACOVA_04364 0.37 -0.5 260,451 - BACOVA_04364 0.39 -0.9 260,470 + BACOVA_04364 0.42 +2.4 260,489 + BACOVA_04364 0.45 -1.6 260,511 - BACOVA_04364 0.49 -1.9 260,515 + BACOVA_04364 0.50 -1.5 260,516 - BACOVA_04364 0.50 -0.6 260,518 - BACOVA_04364 0.50 -1.3 260,537 + BACOVA_04364 0.53 -0.8 260,542 - BACOVA_04364 0.54 +1.7 260,581 + BACOVA_04364 0.60 -0.8 260,581 + BACOVA_04364 0.60 +0.9 260,584 + BACOVA_04364 0.61 +0.3 260,595 - BACOVA_04364 0.62 -0.8 260,635 + BACOVA_04364 0.69 +1.5 260,635 + BACOVA_04364 0.69 -0.5 260,636 - BACOVA_04364 0.69 -1.0 260,706 + BACOVA_04364 0.80 -2.3 260,713 + BACOVA_04364 0.81 -1.0 260,713 + BACOVA_04364 0.81 -0.0 260,714 - BACOVA_04364 0.82 -0.4 260,717 - BACOVA_04364 0.82 -1.9 260,727 - BACOVA_04364 0.84 -0.0 260,811 + +1.8 260,811 + -1.2 260,811 + -0.2 260,812 - -1.5 260,812 - -0.7 260,814 - +0.5 260,829 + +0.5 260,863 + BACOVA_04365 0.26 +0.5 260,934 + -1.6 260,935 - -0.0 260,974 + BACOVA_04366 0.39 -1.3 260,975 - BACOVA_04366 0.40 +1.0 260,975 - BACOVA_04366 0.40 -0.5 261,001 - BACOVA_04366 0.65 +2.3 261,052 + -2.7 261,061 - +0.9 261,176 + +4.6 261,177 - +1.3 261,186 + -2.1 261,186 + +1.3 261,187 - +4.5 261,188 + -0.5 261,188 + -1.3 261,188 + -0.0 261,189 - +0.7 261,189 - -0.1 261,190 + -1.6 261,191 - -2.8 261,197 - -0.3
Or see this region's nucleotide sequence