Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04035

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04032 and BACOVA_04033 are separated by 63 nucleotidesBACOVA_04033 and BACOVA_04034 are separated by 63 nucleotidesBACOVA_04034 and BACOVA_04035 are separated by 96 nucleotidesBACOVA_04035 and BACOVA_04036 are separated by 79 nucleotides BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716 _04032 BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908 _04033 BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589 _04034 BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435 _04035 BACOVA_04036: BACOVA_04036 - HpaII restriction endonuclease, at 367,515 to 368,600 _04036 Position (kb) 366 367 368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 365.702 kb on - strandat 365.704 kb on + strandat 365.709 kb on + strandat 365.768 kb on + strandat 365.769 kb on - strandat 365.810 kb on + strand, within BACOVA_04033at 365.811 kb on - strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.841 kb on + strand, within BACOVA_04033at 365.842 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.844 kb on - strand, within BACOVA_04033at 365.919 kb on - strandat 365.919 kb on - strandat 365.987 kb on - strandat 365.990 kb on + strandat 365.991 kb on - strandat 365.991 kb on - strandat 365.992 kb on + strandat 366.020 kb on - strandat 366.024 kb on - strandat 366.024 kb on - strandat 366.053 kb on - strand, within BACOVA_04034at 366.084 kb on + strand, within BACOVA_04034at 366.104 kb on + strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.117 kb on - strand, within BACOVA_04034at 366.120 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.136 kb on - strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.146 kb on + strand, within BACOVA_04034at 366.147 kb on - strand, within BACOVA_04034at 366.148 kb on + strand, within BACOVA_04034at 366.149 kb on - strand, within BACOVA_04034at 366.221 kb on - strand, within BACOVA_04034at 366.258 kb on + strand, within BACOVA_04034at 366.259 kb on - strand, within BACOVA_04034at 366.365 kb on - strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.415 kb on + strand, within BACOVA_04034at 366.473 kb on + strand, within BACOVA_04034at 366.487 kb on + strand, within BACOVA_04034at 366.523 kb on + strand, within BACOVA_04034at 366.524 kb on - strand, within BACOVA_04034at 366.580 kb on + strandat 366.588 kb on - strandat 366.591 kb on + strandat 366.592 kb on - strandat 366.600 kb on - strandat 366.605 kb on + strandat 366.609 kb on - strandat 366.611 kb on + strandat 366.636 kb on + strandat 366.681 kb on + strandat 366.739 kb on + strandat 366.740 kb on - strandat 366.832 kb on + strand, within BACOVA_04035at 366.851 kb on - strand, within BACOVA_04035at 366.860 kb on - strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035at 366.893 kb on + strand, within BACOVA_04035at 366.965 kb on + strand, within BACOVA_04035at 366.966 kb on - strand, within BACOVA_04035at 366.996 kb on - strand, within BACOVA_04035at 367.012 kb on - strand, within BACOVA_04035at 367.060 kb on + strand, within BACOVA_04035at 367.061 kb on - strand, within BACOVA_04035at 367.087 kb on - strand, within BACOVA_04035at 367.087 kb on - strand, within BACOVA_04035at 367.097 kb on + strand, within BACOVA_04035at 367.099 kb on + strand, within BACOVA_04035at 367.169 kb on - strand, within BACOVA_04035at 367.169 kb on - strand, within BACOVA_04035at 367.235 kb on + strand, within BACOVA_04035at 367.269 kb on - strand, within BACOVA_04035at 367.303 kb on - strand, within BACOVA_04035at 367.347 kb on + strand, within BACOVA_04035at 367.381 kb on + strandat 367.382 kb on - strandat 367.383 kb on + strandat 367.384 kb on - strandat 367.384 kb on - strandat 367.384 kb on - strandat 367.413 kb on + strandat 367.446 kb on + strandat 367.447 kb on - strandat 367.450 kb on + strandat 367.466 kb on + strandat 367.477 kb on + strandat 367.492 kb on - strandat 367.513 kb on - strandat 367.595 kb on - strandat 367.678 kb on - strand, within BACOVA_04036at 367.681 kb on - strand, within BACOVA_04036at 367.681 kb on - strand, within BACOVA_04036at 367.683 kb on - strand, within BACOVA_04036at 367.683 kb on - strand, within BACOVA_04036at 367.690 kb on + strand, within BACOVA_04036at 367.695 kb on - strand, within BACOVA_04036at 367.695 kb on - strand, within BACOVA_04036at 367.703 kb on + strand, within BACOVA_04036at 367.705 kb on + strand, within BACOVA_04036at 367.706 kb on - strand, within BACOVA_04036at 367.752 kb on - strand, within BACOVA_04036at 367.757 kb on - strand, within BACOVA_04036at 367.823 kb on - strand, within BACOVA_04036at 368.118 kb on - strand, within BACOVA_04036at 368.121 kb on + strand, within BACOVA_04036at 368.132 kb on - strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.225 kb on + strand, within BACOVA_04036at 368.237 kb on + strand, within BACOVA_04036at 368.237 kb on + strand, within BACOVA_04036at 368.294 kb on - strand, within BACOVA_04036at 368.306 kb on + strand, within BACOVA_04036at 368.306 kb on + strand, within BACOVA_04036at 368.307 kb on - strand, within BACOVA_04036at 368.307 kb on - strand, within BACOVA_04036at 368.313 kb on + strand, within BACOVA_04036at 368.376 kb on + strand, within BACOVA_04036at 368.411 kb on - strand, within BACOVA_04036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
remove
365,702 - +1.5
365,704 + -1.5
365,709 + -3.8
365,768 + -0.5
365,769 - -0.3
365,810 + BACOVA_04033 0.23 -0.1
365,811 - BACOVA_04033 0.24 -0.3
365,841 + BACOVA_04033 0.47 +1.8
365,841 + BACOVA_04033 0.47 -1.1
365,842 - BACOVA_04033 0.48 +1.5
365,844 - BACOVA_04033 0.50 -0.5
365,844 - BACOVA_04033 0.50 -0.8
365,919 - -0.5
365,919 - +0.2
365,987 - +0.3
365,990 + +2.5
365,991 - -0.8
365,991 - +1.5
365,992 + +3.1
366,020 - -0.8
366,024 - +2.9
366,024 - +1.3
366,053 - BACOVA_04034 0.13 +1.9
366,084 + BACOVA_04034 0.18 -1.1
366,104 + BACOVA_04034 0.21 -0.8
366,117 - BACOVA_04034 0.23 +3.1
366,117 - BACOVA_04034 0.23 -1.7
366,120 - BACOVA_04034 0.24 -0.1
366,136 - BACOVA_04034 0.27 -0.5
366,136 - BACOVA_04034 0.27 +0.3
366,146 + BACOVA_04034 0.28 -1.8
366,146 + BACOVA_04034 0.28 +0.2
366,146 + BACOVA_04034 0.28 +0.8
366,146 + BACOVA_04034 0.28 +3.7
366,147 - BACOVA_04034 0.28 -2.1
366,148 + BACOVA_04034 0.28 -0.8
366,149 - BACOVA_04034 0.29 +1.5
366,221 - BACOVA_04034 0.40 -0.4
366,258 + BACOVA_04034 0.46 -1.3
366,259 - BACOVA_04034 0.46 +1.1
366,365 - BACOVA_04034 0.64 -1.3
366,415 + BACOVA_04034 0.72 +0.2
366,415 + BACOVA_04034 0.72 +0.1
366,473 + BACOVA_04034 0.81 -0.5
366,487 + BACOVA_04034 0.83 +0.9
366,523 + BACOVA_04034 0.89 -0.5
366,524 - BACOVA_04034 0.89 +0.1
366,580 + -1.5
366,588 - -0.8
366,591 + +1.8
366,592 - -3.4
366,600 - -0.1
366,605 + +0.2
366,609 - +0.4
366,611 + +1.2
366,636 + -0.8
366,681 + -1.8
366,739 + +1.9
366,740 - -2.2
366,832 + BACOVA_04035 0.19 +1.3
366,851 - BACOVA_04035 0.22 -0.8
366,860 - BACOVA_04035 0.23 -0.8
366,893 + BACOVA_04035 0.28 -1.5
366,893 + BACOVA_04035 0.28 -0.5
366,965 + BACOVA_04035 0.37 +1.5
366,966 - BACOVA_04035 0.37 -2.3
366,996 - BACOVA_04035 0.41 -1.1
367,012 - BACOVA_04035 0.43 -0.8
367,060 + BACOVA_04035 0.50 +0.5
367,061 - BACOVA_04035 0.50 +0.3
367,087 - BACOVA_04035 0.53 +0.2
367,087 - BACOVA_04035 0.53 +2.0
367,097 + BACOVA_04035 0.55 -0.4
367,099 + BACOVA_04035 0.55 -1.3
367,169 - BACOVA_04035 0.64 +0.0
367,169 - BACOVA_04035 0.64 -0.1
367,235 + BACOVA_04035 0.73 +2.8
367,269 - BACOVA_04035 0.78 +0.7
367,303 - BACOVA_04035 0.82 +1.5
367,347 + BACOVA_04035 0.88 -1.5
367,381 + -0.8
367,382 - +0.9
367,383 + -0.1
367,384 - -0.3
367,384 - -0.5
367,384 - +0.3
367,413 + +0.2
367,446 + +0.5
367,447 - -1.7
367,450 + +1.7
367,466 + +0.8
367,477 + +0.5
367,492 - -0.3
367,513 - +0.5
367,595 - -1.6
367,678 - BACOVA_04036 0.15 +0.4
367,681 - BACOVA_04036 0.15 +1.5
367,681 - BACOVA_04036 0.15 -1.1
367,683 - BACOVA_04036 0.15 +0.6
367,683 - BACOVA_04036 0.15 +0.5
367,690 + BACOVA_04036 0.16 -1.1
367,695 - BACOVA_04036 0.17 -0.1
367,695 - BACOVA_04036 0.17 -2.1
367,703 + BACOVA_04036 0.17 -0.2
367,705 + BACOVA_04036 0.17 -1.6
367,706 - BACOVA_04036 0.18 +1.6
367,752 - BACOVA_04036 0.22 -2.5
367,757 - BACOVA_04036 0.22 -1.5
367,823 - BACOVA_04036 0.28 +1.1
368,118 - BACOVA_04036 0.56 -2.3
368,121 + BACOVA_04036 0.56 -0.7
368,132 - BACOVA_04036 0.57 +1.5
368,225 + BACOVA_04036 0.65 -2.0
368,225 + BACOVA_04036 0.65 +1.9
368,225 + BACOVA_04036 0.65 +1.8
368,225 + BACOVA_04036 0.65 -0.2
368,237 + BACOVA_04036 0.66 -1.8
368,237 + BACOVA_04036 0.66 +1.5
368,294 - BACOVA_04036 0.72 +1.5
368,306 + BACOVA_04036 0.73 -0.5
368,306 + BACOVA_04036 0.73 -0.8
368,307 - BACOVA_04036 0.73 -1.7
368,307 - BACOVA_04036 0.73 -2.8
368,313 + BACOVA_04036 0.73 +1.2
368,376 + BACOVA_04036 0.79 -1.6
368,411 - BACOVA_04036 0.83 -1.8

Or see this region's nucleotide sequence