Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03412

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03411 and BACOVA_03412 are separated by 179 nucleotidesBACOVA_03412 and BACOVA_03413 are separated by 15 nucleotidesBACOVA_03413 and BACOVA_03414 are separated by 38 nucleotides BACOVA_03411: BACOVA_03411 - sugar-binding domain protein, at 122,866 to 123,900 _03411 BACOVA_03412: BACOVA_03412 - oxidoreductase, aldo/keto reductase family protein, at 124,080 to 125,012 _03412 BACOVA_03413: BACOVA_03413 - amidohydrolase family protein, at 125,028 to 125,951 _03413 BACOVA_03414: BACOVA_03414 - hypothetical protein, at 125,990 to 127,054 _03414 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 123.159 kb on + strand, within BACOVA_03411at 123.160 kb on - strand, within BACOVA_03411at 123.219 kb on - strand, within BACOVA_03411at 123.239 kb on - strand, within BACOVA_03411at 123.239 kb on - strand, within BACOVA_03411at 123.261 kb on + strand, within BACOVA_03411at 123.308 kb on - strand, within BACOVA_03411at 123.352 kb on - strand, within BACOVA_03411at 123.378 kb on + strand, within BACOVA_03411at 123.378 kb on + strand, within BACOVA_03411at 123.379 kb on - strand, within BACOVA_03411at 123.379 kb on - strand, within BACOVA_03411at 123.379 kb on - strand, within BACOVA_03411at 123.382 kb on + strand, within BACOVA_03411at 123.383 kb on - strand, within BACOVA_03411at 123.455 kb on + strand, within BACOVA_03411at 123.456 kb on + strand, within BACOVA_03411at 123.465 kb on + strand, within BACOVA_03411at 123.466 kb on - strand, within BACOVA_03411at 123.468 kb on + strand, within BACOVA_03411at 123.468 kb on + strand, within BACOVA_03411at 123.469 kb on - strand, within BACOVA_03411at 123.531 kb on + strand, within BACOVA_03411at 123.547 kb on - strand, within BACOVA_03411at 123.547 kb on - strand, within BACOVA_03411at 123.585 kb on - strand, within BACOVA_03411at 123.606 kb on + strand, within BACOVA_03411at 123.636 kb on + strand, within BACOVA_03411at 123.636 kb on + strand, within BACOVA_03411at 123.636 kb on + strand, within BACOVA_03411at 123.637 kb on - strand, within BACOVA_03411at 123.637 kb on - strand, within BACOVA_03411at 123.705 kb on + strand, within BACOVA_03411at 123.753 kb on - strand, within BACOVA_03411at 123.832 kb on + strandat 123.883 kb on - strandat 123.883 kb on - strandat 123.928 kb on + strandat 124.030 kb on + strandat 124.033 kb on + strandat 124.042 kb on - strandat 124.086 kb on + strandat 124.254 kb on + strand, within BACOVA_03412at 124.255 kb on - strand, within BACOVA_03412at 124.256 kb on + strand, within BACOVA_03412at 124.286 kb on + strand, within BACOVA_03412at 124.287 kb on - strand, within BACOVA_03412at 124.319 kb on + strand, within BACOVA_03412at 124.366 kb on - strand, within BACOVA_03412at 124.395 kb on + strand, within BACOVA_03412at 124.396 kb on - strand, within BACOVA_03412at 124.421 kb on - strand, within BACOVA_03412at 124.439 kb on - strand, within BACOVA_03412at 124.492 kb on + strand, within BACOVA_03412at 124.492 kb on + strand, within BACOVA_03412at 124.528 kb on + strand, within BACOVA_03412at 124.529 kb on - strand, within BACOVA_03412at 124.545 kb on - strand, within BACOVA_03412at 124.616 kb on + strand, within BACOVA_03412at 124.651 kb on + strand, within BACOVA_03412at 124.651 kb on + strand, within BACOVA_03412at 124.774 kb on + strand, within BACOVA_03412at 124.787 kb on + strand, within BACOVA_03412at 124.880 kb on - strand, within BACOVA_03412at 124.887 kb on - strand, within BACOVA_03412at 124.887 kb on - strand, within BACOVA_03412at 124.893 kb on - strand, within BACOVA_03412at 124.937 kb on + strandat 124.938 kb on - strandat 124.994 kb on - strandat 124.994 kb on - strandat 124.994 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.037 kb on - strandat 125.042 kb on + strandat 125.043 kb on - strandat 125.043 kb on - strandat 125.079 kb on - strandat 125.079 kb on - strandat 125.166 kb on - strand, within BACOVA_03413at 125.237 kb on + strand, within BACOVA_03413at 125.240 kb on + strand, within BACOVA_03413at 125.252 kb on + strand, within BACOVA_03413at 125.261 kb on + strand, within BACOVA_03413at 125.373 kb on - strand, within BACOVA_03413at 125.448 kb on - strand, within BACOVA_03413at 125.700 kb on + strand, within BACOVA_03413at 125.795 kb on + strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.796 kb on - strand, within BACOVA_03413at 125.809 kb on - strand, within BACOVA_03413at 125.920 kb on + strandat 125.928 kb on + strandat 125.985 kb on - strandat 125.985 kb on - strandat 126.002 kb on - strandat 126.002 kb on - strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.005 kb on + strandat 126.007 kb on + strandat 126.007 kb on + strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strandat 126.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
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123,159 + BACOVA_03411 0.28 +0.8
123,160 - BACOVA_03411 0.28 -1.1
123,219 - BACOVA_03411 0.34 -3.3
123,239 - BACOVA_03411 0.36 +1.0
123,239 - BACOVA_03411 0.36 +0.2
123,261 + BACOVA_03411 0.38 +1.3
123,308 - BACOVA_03411 0.43 -1.3
123,352 - BACOVA_03411 0.47 +3.1
123,378 + BACOVA_03411 0.49 +3.2
123,378 + BACOVA_03411 0.49 -0.3
123,379 - BACOVA_03411 0.50 -0.2
123,379 - BACOVA_03411 0.50 -0.0
123,379 - BACOVA_03411 0.50 +0.2
123,382 + BACOVA_03411 0.50 -0.7
123,383 - BACOVA_03411 0.50 -0.5
123,455 + BACOVA_03411 0.57 +0.9
123,456 + BACOVA_03411 0.57 +0.8
123,465 + BACOVA_03411 0.58 -1.3
123,466 - BACOVA_03411 0.58 -2.2
123,468 + BACOVA_03411 0.58 +1.8
123,468 + BACOVA_03411 0.58 +0.8
123,469 - BACOVA_03411 0.58 -0.2
123,531 + BACOVA_03411 0.64 +1.2
123,547 - BACOVA_03411 0.66 -0.3
123,547 - BACOVA_03411 0.66 -2.0
123,585 - BACOVA_03411 0.69 -0.6
123,606 + BACOVA_03411 0.71 -0.6
123,636 + BACOVA_03411 0.74 -3.4
123,636 + BACOVA_03411 0.74 +4.5
123,636 + BACOVA_03411 0.74 -0.4
123,637 - BACOVA_03411 0.74 +2.8
123,637 - BACOVA_03411 0.74 -0.5
123,705 + BACOVA_03411 0.81 +1.2
123,753 - BACOVA_03411 0.86 -1.3
123,832 + -1.5
123,883 - +2.1
123,883 - +0.7
123,928 + +1.7
124,030 + -1.4
124,033 + +2.0
124,042 - -1.3
124,086 + -2.8
124,254 + BACOVA_03412 0.19 +4.1
124,255 - BACOVA_03412 0.19 -0.5
124,256 + BACOVA_03412 0.19 +0.9
124,286 + BACOVA_03412 0.22 -0.3
124,287 - BACOVA_03412 0.22 -0.5
124,319 + BACOVA_03412 0.26 +0.4
124,366 - BACOVA_03412 0.31 -0.7
124,395 + BACOVA_03412 0.34 -1.5
124,396 - BACOVA_03412 0.34 -1.9
124,421 - BACOVA_03412 0.37 +1.4
124,439 - BACOVA_03412 0.38 -0.8
124,492 + BACOVA_03412 0.44 +1.1
124,492 + BACOVA_03412 0.44 +2.8
124,528 + BACOVA_03412 0.48 -3.7
124,529 - BACOVA_03412 0.48 +0.6
124,545 - BACOVA_03412 0.50 -2.6
124,616 + BACOVA_03412 0.57 -1.6
124,651 + BACOVA_03412 0.61 -0.7
124,651 + BACOVA_03412 0.61 +0.1
124,774 + BACOVA_03412 0.74 -2.0
124,787 + BACOVA_03412 0.76 -1.1
124,880 - BACOVA_03412 0.86 -0.9
124,887 - BACOVA_03412 0.86 +1.3
124,887 - BACOVA_03412 0.86 +1.1
124,893 - BACOVA_03412 0.87 -0.0
124,937 + -1.7
124,938 - +0.3
124,994 - -2.6
124,994 - +1.2
124,994 - +1.1
125,037 - +1.0
125,037 - +2.6
125,037 - -0.6
125,037 - -2.1
125,037 - +2.0
125,042 + -1.6
125,043 - +0.3
125,043 - -1.0
125,079 - -0.6
125,079 - -1.8
125,166 - BACOVA_03413 0.15 -1.7
125,237 + BACOVA_03413 0.23 -2.5
125,240 + BACOVA_03413 0.23 +0.5
125,252 + BACOVA_03413 0.24 -1.6
125,261 + BACOVA_03413 0.25 -1.0
125,373 - BACOVA_03413 0.37 +1.9
125,448 - BACOVA_03413 0.45 +3.1
125,700 + BACOVA_03413 0.73 +1.4
125,795 + BACOVA_03413 0.83 -0.2
125,796 - BACOVA_03413 0.83 -0.1
125,796 - BACOVA_03413 0.83 -0.9
125,796 - BACOVA_03413 0.83 +1.4
125,809 - BACOVA_03413 0.85 -2.0
125,920 + +0.9
125,928 + -1.5
125,985 - -0.7
125,985 - +3.3
126,002 - +1.2
126,002 - -1.3
126,005 + -1.3
126,005 + +1.3
126,005 + -0.8
126,005 + +1.4
126,007 + -1.8
126,007 + -2.0
126,008 - -1.1
126,008 - -1.0
126,008 - -2.4
126,008 - +0.4
126,008 - -0.5

Or see this region's nucleotide sequence