Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03211 and BACOVA_03212 are separated by 81 nucleotides BACOVA_03212 and BACOVA_03213 are separated by 13 nucleotides BACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides
BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702
_03211
BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293
_03212
BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672
_03213
BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012
_03214
Position (kb) 302
303 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 301.358 kb on + strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.364 kb on + strand, within BACOVA_03211 at 301.365 kb on - strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.373 kb on - strand, within BACOVA_03211 at 301.376 kb on - strand, within BACOVA_03211 at 301.415 kb on - strand, within BACOVA_03211 at 301.417 kb on + strand, within BACOVA_03211 at 301.426 kb on - strand, within BACOVA_03211 at 301.426 kb on - strand, within BACOVA_03211 at 301.449 kb on - strand, within BACOVA_03211 at 301.451 kb on + strand, within BACOVA_03211 at 301.486 kb on + strand, within BACOVA_03211 at 301.557 kb on - strand, within BACOVA_03211 at 301.557 kb on - strand, within BACOVA_03211 at 301.626 kb on - strand at 301.656 kb on + strand at 301.684 kb on + strand at 301.685 kb on - strand at 301.689 kb on - strand at 301.701 kb on - strand at 301.721 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.744 kb on - strand at 301.774 kb on - strand at 301.789 kb on + strand at 301.819 kb on - strand at 301.861 kb on + strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.873 kb on + strand, within BACOVA_03212 at 301.897 kb on + strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.903 kb on + strand, within BACOVA_03212 at 301.927 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.037 kb on + strand, within BACOVA_03212 at 302.065 kb on + strand, within BACOVA_03212 at 302.079 kb on + strand, within BACOVA_03212 at 302.083 kb on + strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.153 kb on + strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.178 kb on + strand, within BACOVA_03212 at 302.181 kb on + strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.186 kb on - strand, within BACOVA_03212 at 302.275 kb on - strand at 302.281 kb on - strand at 302.281 kb on - strand at 302.346 kb on + strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.352 kb on - strand, within BACOVA_03213 at 302.357 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.395 kb on - strand, within BACOVA_03213 at 302.411 kb on - strand, within BACOVA_03213 at 302.462 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.563 kb on + strand, within BACOVA_03213 at 302.564 kb on - strand, within BACOVA_03213 at 302.585 kb on + strand, within BACOVA_03213 at 302.587 kb on + strand, within BACOVA_03213 at 302.588 kb on - strand, within BACOVA_03213 at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.648 kb on - strand at 302.648 kb on - strand at 302.654 kb on + strand at 302.692 kb on - strand at 302.692 kb on - strand at 302.695 kb on + strand at 302.696 kb on - strand at 302.698 kb on + strand at 302.731 kb on + strand at 302.732 kb on - strand at 302.750 kb on + strand at 302.757 kb on + strand at 302.787 kb on + strand at 302.788 kb on - strand at 302.788 kb on - strand at 302.790 kb on + strand at 302.805 kb on - strand at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.894 kb on - strand, within BACOVA_03214 at 302.904 kb on - strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.905 kb on + strand, within BACOVA_03214 at 302.911 kb on - strand, within BACOVA_03214 at 302.921 kb on - strand, within BACOVA_03214 at 302.964 kb on + strand, within BACOVA_03214 at 302.972 kb on - strand, within BACOVA_03214 at 302.973 kb on + strand, within BACOVA_03214 at 303.004 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.049 kb on + strand, within BACOVA_03214 at 303.050 kb on - strand, within BACOVA_03214 at 303.067 kb on - strand, within BACOVA_03214 at 303.089 kb on + strand, within BACOVA_03214 at 303.120 kb on - strand, within BACOVA_03214 at 303.175 kb on - strand, within BACOVA_03214 at 303.190 kb on + strand, within BACOVA_03214 at 303.210 kb on - strand, within BACOVA_03214 at 303.255 kb on - strand, within BACOVA_03214 at 303.281 kb on + strand, within BACOVA_03214 at 303.291 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.314 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.324 kb on - strand, within BACOVA_03214 at 303.326 kb on + strand, within BACOVA_03214 at 303.362 kb on - strand, within BACOVA_03214 at 303.411 kb on - strand, within BACOVA_03214 at 303.435 kb on - strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.437 kb on + strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.438 kb on - strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.439 kb on + strand, within BACOVA_03214 at 303.470 kb on + strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.473 kb on - strand, within BACOVA_03214 at 303.498 kb on - strand, within BACOVA_03214 at 303.547 kb on - strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.615 kb on + strand, within BACOVA_03214 at 303.672 kb on - strand, within BACOVA_03214
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 301,358 + BACOVA_03211 0.67 -1.8 301,359 - BACOVA_03211 0.67 -0.4 301,359 - BACOVA_03211 0.67 -0.6 301,359 - BACOVA_03211 0.67 -0.8 301,364 + BACOVA_03211 0.68 +1.1 301,365 - BACOVA_03211 0.68 -1.1 301,372 + BACOVA_03211 0.69 +1.1 301,372 + BACOVA_03211 0.69 +0.6 301,372 + BACOVA_03211 0.69 +1.8 301,373 - BACOVA_03211 0.69 +0.6 301,376 - BACOVA_03211 0.69 +0.8 301,415 - BACOVA_03211 0.73 -0.7 301,417 + BACOVA_03211 0.73 -0.7 301,426 - BACOVA_03211 0.74 -1.4 301,426 - BACOVA_03211 0.74 -0.1 301,449 - BACOVA_03211 0.76 +3.1 301,451 + BACOVA_03211 0.76 +1.5 301,486 + BACOVA_03211 0.79 -0.9 301,557 - BACOVA_03211 0.86 +2.8 301,557 - BACOVA_03211 0.86 -0.8 301,626 - -0.7 301,656 + -0.4 301,684 + -1.4 301,685 - +0.8 301,689 - -0.1 301,701 - +0.1 301,721 + -0.9 301,743 + +3.1 301,743 + -2.5 301,743 + +1.3 301,744 - +0.1 301,774 - +1.6 301,789 + -2.5 301,819 - -2.4 301,861 + BACOVA_03212 0.15 +3.2 301,862 - BACOVA_03212 0.15 +0.6 301,862 - BACOVA_03212 0.15 -1.2 301,873 + BACOVA_03212 0.17 +0.3 301,897 + BACOVA_03212 0.22 +0.6 301,898 - BACOVA_03212 0.22 -1.2 301,898 - BACOVA_03212 0.22 -1.7 301,903 + BACOVA_03212 0.23 +1.6 301,927 + BACOVA_03212 0.28 -2.4 302,028 + BACOVA_03212 0.48 +1.3 302,028 + BACOVA_03212 0.48 -1.4 302,037 + BACOVA_03212 0.50 +0.2 302,065 + BACOVA_03212 0.55 +1.6 302,079 + BACOVA_03212 0.58 -0.7 302,083 + BACOVA_03212 0.59 +0.8 302,084 - BACOVA_03212 0.59 +0.6 302,084 - BACOVA_03212 0.59 -0.2 302,084 - BACOVA_03212 0.59 +1.8 302,084 - BACOVA_03212 0.59 +1.2 302,153 + BACOVA_03212 0.72 +0.1 302,162 - BACOVA_03212 0.74 -2.8 302,162 - BACOVA_03212 0.74 -0.4 302,178 + BACOVA_03212 0.77 -0.4 302,181 + BACOVA_03212 0.78 +3.3 302,182 - BACOVA_03212 0.78 -2.5 302,182 - BACOVA_03212 0.78 +2.2 302,185 + BACOVA_03212 0.79 -1.9 302,185 + BACOVA_03212 0.79 -1.2 302,186 - BACOVA_03212 0.79 -0.6 302,275 - +0.1 302,281 - -0.9 302,281 - -0.5 302,346 + BACOVA_03213 0.11 -1.2 302,347 - BACOVA_03213 0.11 +1.9 302,347 - BACOVA_03213 0.11 -0.4 302,351 + BACOVA_03213 0.12 -0.6 302,351 + BACOVA_03213 0.12 -2.8 302,352 - BACOVA_03213 0.12 -1.4 302,357 - BACOVA_03213 0.14 -1.9 302,368 - BACOVA_03213 0.17 +1.0 302,368 - BACOVA_03213 0.17 -0.5 302,395 - BACOVA_03213 0.24 -2.2 302,411 - BACOVA_03213 0.28 -0.7 302,462 + BACOVA_03213 0.42 -0.9 302,464 + BACOVA_03213 0.43 +1.6 302,464 + BACOVA_03213 0.43 -1.2 302,563 + BACOVA_03213 0.70 -0.1 302,564 - BACOVA_03213 0.70 +1.5 302,585 + BACOVA_03213 0.76 +1.4 302,587 + BACOVA_03213 0.77 +3.0 302,588 - BACOVA_03213 0.77 +1.4 302,647 + +2.2 302,647 + +2.9 302,647 + +0.1 302,647 + -0.9 302,648 - -2.6 302,648 - -0.4 302,654 + -0.7 302,692 - +1.4 302,692 - +0.9 302,695 + -2.3 302,696 - -2.9 302,698 + -0.2 302,731 + -2.0 302,732 - -1.1 302,750 + +0.6 302,757 + -0.8 302,787 + +3.2 302,788 - +1.8 302,788 - +2.2 302,790 + -1.5 302,805 - -1.5 302,894 - BACOVA_03214 0.15 +1.1 302,894 - BACOVA_03214 0.15 -2.3 302,894 - BACOVA_03214 0.15 -0.7 302,904 - BACOVA_03214 0.15 -1.8 302,905 + BACOVA_03214 0.15 -1.2 302,905 + BACOVA_03214 0.15 -4.1 302,911 - BACOVA_03214 0.16 -1.2 302,921 - BACOVA_03214 0.17 +1.1 302,964 + BACOVA_03214 0.20 -2.1 302,972 - BACOVA_03214 0.21 +1.1 302,973 + BACOVA_03214 0.21 -0.5 303,004 + BACOVA_03214 0.23 -2.2 303,049 + BACOVA_03214 0.26 +2.8 303,049 + BACOVA_03214 0.26 +0.3 303,050 - BACOVA_03214 0.27 +0.4 303,067 - BACOVA_03214 0.28 +1.5 303,089 + BACOVA_03214 0.30 -1.2 303,120 - BACOVA_03214 0.32 -1.2 303,175 - BACOVA_03214 0.36 +3.5 303,190 + BACOVA_03214 0.37 +1.6 303,210 - BACOVA_03214 0.39 +1.3 303,255 - BACOVA_03214 0.42 +3.5 303,281 + BACOVA_03214 0.44 +0.5 303,291 - BACOVA_03214 0.45 -0.7 303,314 - BACOVA_03214 0.47 -0.5 303,314 - BACOVA_03214 0.47 +0.5 303,324 - BACOVA_03214 0.47 -0.4 303,324 - BACOVA_03214 0.47 -2.4 303,324 - BACOVA_03214 0.47 -0.9 303,326 + BACOVA_03214 0.48 -0.7 303,362 - BACOVA_03214 0.50 -0.8 303,411 - BACOVA_03214 0.54 -0.7 303,435 - BACOVA_03214 0.56 -1.1 303,437 + BACOVA_03214 0.56 -1.2 303,437 + BACOVA_03214 0.56 -1.1 303,438 - BACOVA_03214 0.56 +1.4 303,438 - BACOVA_03214 0.56 -0.9 303,439 + BACOVA_03214 0.56 -1.6 303,439 + BACOVA_03214 0.56 +0.6 303,470 + BACOVA_03214 0.59 +1.1 303,473 - BACOVA_03214 0.59 -1.5 303,473 - BACOVA_03214 0.59 +1.5 303,498 - BACOVA_03214 0.61 +0.3 303,547 - BACOVA_03214 0.64 +0.1 303,615 + BACOVA_03214 0.70 +0.8 303,615 + BACOVA_03214 0.70 +0.4 303,615 + BACOVA_03214 0.70 -1.4 303,672 - BACOVA_03214 0.74 -2.9
Or see this region's nucleotide sequence