Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03140

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03138 and BACOVA_03139 are separated by 16 nucleotidesBACOVA_03139 and BACOVA_03140 overlap by 4 nucleotidesBACOVA_03140 and BACOVA_03141 are separated by 11 nucleotides BACOVA_03138: BACOVA_03138 - hypothetical protein, at 229,955 to 230,893 _03138 BACOVA_03139: BACOVA_03139 - hypothetical protein, at 230,910 to 231,527 _03139 BACOVA_03140: BACOVA_03140 - hypothetical protein, at 231,524 to 232,795 _03140 BACOVA_03141: BACOVA_03141 - ATPase family associated with various cellular activities (AAA), at 232,807 to 233,781 _03141 Position (kb) 231 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 230.524 kb on - strand, within BACOVA_03138at 230.607 kb on + strand, within BACOVA_03138at 230.635 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.692 kb on + strand, within BACOVA_03138at 230.693 kb on - strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.780 kb on + strand, within BACOVA_03138at 230.781 kb on - strand, within BACOVA_03138at 230.793 kb on + strand, within BACOVA_03138at 230.797 kb on + strand, within BACOVA_03138at 230.798 kb on - strand, within BACOVA_03138at 230.817 kb on - strandat 230.844 kb on + strandat 230.845 kb on - strandat 230.854 kb on - strandat 230.854 kb on - strandat 230.859 kb on + strandat 230.870 kb on - strandat 230.933 kb on + strandat 230.938 kb on + strandat 230.949 kb on - strandat 230.985 kb on + strand, within BACOVA_03139at 230.986 kb on - strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.992 kb on - strand, within BACOVA_03139at 231.023 kb on + strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.070 kb on + strand, within BACOVA_03139at 231.108 kb on - strand, within BACOVA_03139at 231.116 kb on - strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.299 kb on - strand, within BACOVA_03139at 231.365 kb on + strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.440 kb on - strand, within BACOVA_03139at 231.553 kb on + strandat 231.554 kb on - strandat 231.554 kb on - strandat 231.568 kb on - strandat 231.585 kb on + strandat 231.585 kb on + strandat 231.590 kb on + strandat 231.726 kb on - strand, within BACOVA_03140at 231.745 kb on + strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.765 kb on + strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.886 kb on + strand, within BACOVA_03140at 231.887 kb on - strand, within BACOVA_03140at 231.905 kb on + strand, within BACOVA_03140at 231.909 kb on - strand, within BACOVA_03140at 231.981 kb on + strand, within BACOVA_03140at 232.043 kb on + strand, within BACOVA_03140at 232.044 kb on - strand, within BACOVA_03140at 232.144 kb on + strand, within BACOVA_03140at 232.154 kb on + strand, within BACOVA_03140at 232.155 kb on - strand, within BACOVA_03140at 232.156 kb on + strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.164 kb on + strand, within BACOVA_03140at 232.199 kb on - strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.265 kb on - strand, within BACOVA_03140at 232.301 kb on - strand, within BACOVA_03140at 232.319 kb on + strand, within BACOVA_03140at 232.411 kb on + strand, within BACOVA_03140at 232.427 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140at 232.572 kb on - strand, within BACOVA_03140at 232.575 kb on + strand, within BACOVA_03140at 232.575 kb on + strand, within BACOVA_03140at 232.757 kb on + strandat 232.757 kb on + strandat 232.757 kb on + strandat 232.758 kb on - strandat 232.759 kb on + strandat 232.760 kb on - strandat 232.766 kb on - strandat 232.780 kb on - strandat 232.780 kb on - strandat 232.790 kb on - strandat 232.838 kb on + strandat 232.839 kb on - strandat 232.839 kb on - strandat 232.860 kb on - strandat 232.892 kb on + strandat 232.893 kb on - strandat 232.922 kb on + strand, within BACOVA_03141at 232.952 kb on + strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 232.959 kb on - strand, within BACOVA_03141at 233.054 kb on + strand, within BACOVA_03141at 233.069 kb on + strand, within BACOVA_03141at 233.070 kb on - strand, within BACOVA_03141at 233.073 kb on - strand, within BACOVA_03141at 233.088 kb on + strand, within BACOVA_03141at 233.091 kb on + strand, within BACOVA_03141at 233.140 kb on - strand, within BACOVA_03141at 233.224 kb on - strand, within BACOVA_03141at 233.303 kb on - strand, within BACOVA_03141at 233.346 kb on - strand, within BACOVA_03141at 233.400 kb on + strand, within BACOVA_03141at 233.401 kb on - strand, within BACOVA_03141at 233.401 kb on - strand, within BACOVA_03141at 233.433 kb on + strand, within BACOVA_03141at 233.478 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.515 kb on + strand, within BACOVA_03141at 233.516 kb on - strand, within BACOVA_03141at 233.550 kb on + strand, within BACOVA_03141at 233.561 kb on - strand, within BACOVA_03141at 233.561 kb on - strand, within BACOVA_03141at 233.615 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.675 kb on - strand, within BACOVA_03141at 233.678 kb on + strand, within BACOVA_03141at 233.753 kb on + strandat 233.789 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
remove
230,524 - BACOVA_03138 0.61 +3.5
230,607 + BACOVA_03138 0.69 +0.3
230,635 - BACOVA_03138 0.72 +1.6
230,668 - BACOVA_03138 0.76 -0.9
230,668 - BACOVA_03138 0.76 +2.2
230,672 + BACOVA_03138 0.76 -0.7
230,672 + BACOVA_03138 0.76 -2.6
230,672 + BACOVA_03138 0.76 -2.2
230,692 + BACOVA_03138 0.78 -1.9
230,693 - BACOVA_03138 0.79 -1.0
230,695 + BACOVA_03138 0.79 -2.5
230,695 + BACOVA_03138 0.79 +2.4
230,747 + BACOVA_03138 0.84 -1.2
230,747 + BACOVA_03138 0.84 -0.4
230,748 - BACOVA_03138 0.84 +2.6
230,748 - BACOVA_03138 0.84 +1.6
230,780 + BACOVA_03138 0.88 -2.4
230,781 - BACOVA_03138 0.88 +1.1
230,793 + BACOVA_03138 0.89 -1.7
230,797 + BACOVA_03138 0.90 -1.4
230,798 - BACOVA_03138 0.90 -0.4
230,817 - -1.2
230,844 + -0.6
230,845 - -1.2
230,854 - -3.7
230,854 - -0.4
230,859 + +0.6
230,870 - -0.2
230,933 + +0.3
230,938 + +1.1
230,949 - +0.1
230,985 + BACOVA_03139 0.12 +0.4
230,986 - BACOVA_03139 0.12 +0.2
230,991 + BACOVA_03139 0.13 +0.6
230,991 + BACOVA_03139 0.13 +0.8
230,992 - BACOVA_03139 0.13 -0.5
231,023 + BACOVA_03139 0.18 -2.2
231,066 - BACOVA_03139 0.25 -0.2
231,066 - BACOVA_03139 0.25 -1.7
231,070 + BACOVA_03139 0.26 +0.6
231,108 - BACOVA_03139 0.32 -0.9
231,116 - BACOVA_03139 0.33 -0.3
231,119 + BACOVA_03139 0.34 -1.8
231,119 + BACOVA_03139 0.34 +0.6
231,119 + BACOVA_03139 0.34 -0.5
231,119 + BACOVA_03139 0.34 +0.1
231,120 - BACOVA_03139 0.34 -1.2
231,120 - BACOVA_03139 0.34 +1.3
231,120 - BACOVA_03139 0.34 +1.0
231,120 - BACOVA_03139 0.34 +1.5
231,120 - BACOVA_03139 0.34 +1.0
231,120 - BACOVA_03139 0.34 -0.9
231,212 + BACOVA_03139 0.49 +2.1
231,212 + BACOVA_03139 0.49 -2.4
231,213 - BACOVA_03139 0.49 -1.7
231,213 - BACOVA_03139 0.49 +1.8
231,299 - BACOVA_03139 0.63 -0.9
231,365 + BACOVA_03139 0.74 +0.1
231,382 - BACOVA_03139 0.76 -1.4
231,382 - BACOVA_03139 0.76 -0.1
231,384 - BACOVA_03139 0.77 +2.5
231,384 - BACOVA_03139 0.77 -0.4
231,384 - BACOVA_03139 0.77 -3.8
231,440 - BACOVA_03139 0.86 +1.6
231,553 + -0.8
231,554 - -1.1
231,554 - +1.6
231,568 - +0.8
231,585 + -1.7
231,585 + +3.6
231,590 + -0.6
231,726 - BACOVA_03140 0.16 +2.3
231,745 + BACOVA_03140 0.17 -2.4
231,764 - BACOVA_03140 0.19 -1.5
231,764 - BACOVA_03140 0.19 -2.4
231,765 + BACOVA_03140 0.19 +0.7
231,766 - BACOVA_03140 0.19 +0.1
231,766 - BACOVA_03140 0.19 -2.1
231,766 - BACOVA_03140 0.19 -0.4
231,772 + BACOVA_03140 0.19 -1.2
231,772 + BACOVA_03140 0.19 +0.6
231,886 + BACOVA_03140 0.28 +1.6
231,887 - BACOVA_03140 0.29 -3.1
231,905 + BACOVA_03140 0.30 -0.9
231,909 - BACOVA_03140 0.30 +2.8
231,981 + BACOVA_03140 0.36 -0.3
232,043 + BACOVA_03140 0.41 +1.2
232,044 - BACOVA_03140 0.41 -0.2
232,144 + BACOVA_03140 0.49 +1.4
232,154 + BACOVA_03140 0.50 -0.4
232,155 - BACOVA_03140 0.50 -1.4
232,156 + BACOVA_03140 0.50 +0.2
232,157 - BACOVA_03140 0.50 -0.9
232,157 - BACOVA_03140 0.50 +2.0
232,157 - BACOVA_03140 0.50 +0.1
232,157 - BACOVA_03140 0.50 -1.9
232,164 + BACOVA_03140 0.50 -1.9
232,199 - BACOVA_03140 0.53 -1.8
232,262 + BACOVA_03140 0.58 -0.7
232,262 + BACOVA_03140 0.58 -1.4
232,263 - BACOVA_03140 0.58 +0.2
232,263 - BACOVA_03140 0.58 +3.1
232,265 - BACOVA_03140 0.58 +0.3
232,301 - BACOVA_03140 0.61 -0.7
232,319 + BACOVA_03140 0.62 +0.3
232,411 + BACOVA_03140 0.70 -2.9
232,427 - BACOVA_03140 0.71 -0.7
232,517 - BACOVA_03140 0.78 -0.9
232,517 - BACOVA_03140 0.78 +0.8
232,572 - BACOVA_03140 0.82 -1.5
232,575 + BACOVA_03140 0.83 +1.4
232,575 + BACOVA_03140 0.83 +1.3
232,757 + -0.2
232,757 + +2.6
232,757 + +0.6
232,758 - -1.8
232,759 + +1.6
232,760 - -0.1
232,766 - +0.1
232,780 - +2.1
232,780 - +0.8
232,790 - -1.9
232,838 + +1.5
232,839 - +1.3
232,839 - +3.2
232,860 - +1.1
232,892 + -2.0
232,893 - +0.5
232,922 + BACOVA_03141 0.12 -0.5
232,952 + BACOVA_03141 0.15 -1.4
232,959 - BACOVA_03141 0.16 +0.1
232,959 - BACOVA_03141 0.16 -1.8
232,959 - BACOVA_03141 0.16 -0.1
233,054 + BACOVA_03141 0.25 -2.5
233,069 + BACOVA_03141 0.27 +0.6
233,070 - BACOVA_03141 0.27 -1.1
233,073 - BACOVA_03141 0.27 +2.6
233,088 + BACOVA_03141 0.29 -0.9
233,091 + BACOVA_03141 0.29 -1.5
233,140 - BACOVA_03141 0.34 +0.1
233,224 - BACOVA_03141 0.43 -0.5
233,303 - BACOVA_03141 0.51 +1.3
233,346 - BACOVA_03141 0.55 -1.4
233,400 + BACOVA_03141 0.61 -1.7
233,401 - BACOVA_03141 0.61 -2.3
233,401 - BACOVA_03141 0.61 -1.7
233,433 + BACOVA_03141 0.64 -0.1
233,478 + BACOVA_03141 0.69 +2.4
233,515 + BACOVA_03141 0.73 -0.8
233,515 + BACOVA_03141 0.73 +0.4
233,515 + BACOVA_03141 0.73 -0.4
233,516 - BACOVA_03141 0.73 -0.6
233,550 + BACOVA_03141 0.76 -0.4
233,561 - BACOVA_03141 0.77 -1.2
233,561 - BACOVA_03141 0.77 +0.2
233,615 - BACOVA_03141 0.83 -2.5
233,675 - BACOVA_03141 0.89 +2.5
233,675 - BACOVA_03141 0.89 +0.7
233,675 - BACOVA_03141 0.89 +0.1
233,678 + BACOVA_03141 0.89 +0.1
233,753 + +1.9
233,789 + +2.9

Or see this region's nucleotide sequence