Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02898 and BACOVA_02899 are separated by 122 nucleotides BACOVA_02899 and BACOVA_02900 are separated by 90 nucleotides BACOVA_02900 and BACOVA_02901 are separated by 138 nucleotides BACOVA_02901 and BACOVA_02902 are separated by 117 nucleotides
BACOVA_02898: BACOVA_02898 - hypothetical protein, at 401,031 to 401,921
_02898
BACOVA_02899: BACOVA_02899 - putative DNA-binding protein, at 402,044 to 402,562
_02899
BACOVA_02900: BACOVA_02900 - N-acetylmuramoyl-L-alanine amidase, at 402,653 to 403,120
_02900
BACOVA_02901: BACOVA_02901 - hypothetical protein, at 403,259 to 403,360
_02901
BACOVA_02902: BACOVA_02902 - hypothetical protein, at 403,478 to 405,442
_02902
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.794 kb on - strand, within BACOVA_02898 at 401.898 kb on + strand at 401.899 kb on - strand at 401.967 kb on - strand at 402.012 kb on + strand at 402.037 kb on + strand at 402.056 kb on + strand at 402.171 kb on - strand, within BACOVA_02899 at 402.195 kb on + strand, within BACOVA_02899 at 402.195 kb on + strand, within BACOVA_02899 at 402.307 kb on + strand, within BACOVA_02899 at 402.333 kb on + strand, within BACOVA_02899 at 402.334 kb on - strand, within BACOVA_02899 at 402.398 kb on - strand, within BACOVA_02899 at 402.481 kb on + strand, within BACOVA_02899 at 402.481 kb on + strand, within BACOVA_02899 at 402.488 kb on - strand, within BACOVA_02899 at 402.488 kb on - strand, within BACOVA_02899 at 402.561 kb on - strand at 402.625 kb on - strand at 402.633 kb on - strand at 402.633 kb on - strand at 402.639 kb on - strand at 402.670 kb on - strand at 402.707 kb on - strand, within BACOVA_02900 at 402.774 kb on - strand, within BACOVA_02900 at 402.862 kb on - strand, within BACOVA_02900 at 402.873 kb on - strand, within BACOVA_02900 at 403.134 kb on + strand at 403.144 kb on + strand at 403.176 kb on - strand at 403.179 kb on + strand at 403.179 kb on + strand at 403.179 kb on + strand at 403.181 kb on + strand at 403.182 kb on - strand at 403.285 kb on + strand, within BACOVA_02901 at 403.285 kb on + strand, within BACOVA_02901 at 403.285 kb on + strand, within BACOVA_02901 at 403.286 kb on - strand, within BACOVA_02901 at 403.304 kb on - strand, within BACOVA_02901 at 403.342 kb on + strand, within BACOVA_02901 at 403.370 kb on - strand at 403.373 kb on + strand at 403.410 kb on - strand at 403.429 kb on + strand at 403.448 kb on + strand at 403.451 kb on + strand at 403.452 kb on - strand at 403.483 kb on + strand at 403.487 kb on + strand at 403.492 kb on + strand at 403.493 kb on - strand at 403.528 kb on + strand at 403.579 kb on + strand at 403.619 kb on - strand at 403.648 kb on + strand at 403.670 kb on - strand at 403.685 kb on - strand, within BACOVA_02902 at 403.696 kb on + strand, within BACOVA_02902 at 403.707 kb on + strand, within BACOVA_02902 at 403.708 kb on - strand, within BACOVA_02902 at 403.708 kb on - strand, within BACOVA_02902 at 403.710 kb on - strand, within BACOVA_02902 at 403.714 kb on + strand, within BACOVA_02902 at 403.715 kb on - strand, within BACOVA_02902 at 403.715 kb on - strand, within BACOVA_02902 at 403.718 kb on - strand, within BACOVA_02902 at 403.718 kb on - strand, within BACOVA_02902 at 403.726 kb on - strand, within BACOVA_02902 at 403.726 kb on - strand, within BACOVA_02902 at 403.731 kb on - strand, within BACOVA_02902 at 403.754 kb on + strand, within BACOVA_02902 at 403.754 kb on + strand, within BACOVA_02902 at 403.755 kb on - strand, within BACOVA_02902 at 403.755 kb on - strand, within BACOVA_02902 at 403.761 kb on + strand, within BACOVA_02902 at 403.762 kb on - strand, within BACOVA_02902 at 403.777 kb on + strand, within BACOVA_02902 at 403.782 kb on + strand, within BACOVA_02902 at 403.783 kb on - strand, within BACOVA_02902 at 403.797 kb on - strand, within BACOVA_02902 at 403.832 kb on + strand, within BACOVA_02902 at 403.832 kb on + strand, within BACOVA_02902 at 403.834 kb on + strand, within BACOVA_02902 at 403.834 kb on + strand, within BACOVA_02902 at 403.835 kb on - strand, within BACOVA_02902 at 403.850 kb on - strand, within BACOVA_02902 at 403.866 kb on + strand, within BACOVA_02902 at 403.893 kb on - strand, within BACOVA_02902 at 403.893 kb on - strand, within BACOVA_02902 at 403.954 kb on + strand, within BACOVA_02902 at 404.042 kb on - strand, within BACOVA_02902 at 404.115 kb on - strand, within BACOVA_02902 at 404.117 kb on + strand, within BACOVA_02902 at 404.117 kb on + strand, within BACOVA_02902 at 404.117 kb on + strand, within BACOVA_02902 at 404.118 kb on - strand, within BACOVA_02902
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 401,794 - BACOVA_02898 0.86 -3.5 401,898 + +1.5 401,899 - -1.0 401,967 - -0.7 402,012 + -3.1 402,037 + -1.7 402,056 + -0.3 402,171 - BACOVA_02899 0.24 -1.3 402,195 + BACOVA_02899 0.29 -1.7 402,195 + BACOVA_02899 0.29 +0.7 402,307 + BACOVA_02899 0.51 -1.2 402,333 + BACOVA_02899 0.56 +0.9 402,334 - BACOVA_02899 0.56 +0.3 402,398 - BACOVA_02899 0.68 -0.5 402,481 + BACOVA_02899 0.84 +1.5 402,481 + BACOVA_02899 0.84 +3.7 402,488 - BACOVA_02899 0.86 -1.5 402,488 - BACOVA_02899 0.86 -1.2 402,561 - +0.0 402,625 - -2.4 402,633 - -0.8 402,633 - +0.4 402,639 - -1.1 402,670 - +1.5 402,707 - BACOVA_02900 0.12 +0.2 402,774 - BACOVA_02900 0.26 -0.9 402,862 - BACOVA_02900 0.45 +0.5 402,873 - BACOVA_02900 0.47 -0.8 403,134 + -0.8 403,144 + -1.1 403,176 - -2.3 403,179 + -0.1 403,179 + -2.4 403,179 + +0.8 403,181 + -3.1 403,182 - -0.1 403,285 + BACOVA_02901 0.25 +1.5 403,285 + BACOVA_02901 0.25 +2.9 403,285 + BACOVA_02901 0.25 +1.8 403,286 - BACOVA_02901 0.26 -1.9 403,304 - BACOVA_02901 0.44 +1.9 403,342 + BACOVA_02901 0.81 -0.7 403,370 - +0.5 403,373 + +0.0 403,410 - +2.9 403,429 + +1.5 403,448 + -1.7 403,451 + -1.7 403,452 - -1.2 403,483 + +2.3 403,487 + -0.5 403,492 + -0.8 403,493 - -1.5 403,528 + +1.1 403,579 + -1.4 403,619 - +0.5 403,648 + -0.1 403,670 - -0.2 403,685 - BACOVA_02902 0.11 -1.4 403,696 + BACOVA_02902 0.11 -1.1 403,707 + BACOVA_02902 0.12 +0.7 403,708 - BACOVA_02902 0.12 -0.5 403,708 - BACOVA_02902 0.12 -2.2 403,710 - BACOVA_02902 0.12 -1.5 403,714 + BACOVA_02902 0.12 -1.0 403,715 - BACOVA_02902 0.12 -0.8 403,715 - BACOVA_02902 0.12 +0.4 403,718 - BACOVA_02902 0.12 +0.8 403,718 - BACOVA_02902 0.12 -0.9 403,726 - BACOVA_02902 0.13 +1.7 403,726 - BACOVA_02902 0.13 -1.6 403,731 - BACOVA_02902 0.13 -0.6 403,754 + BACOVA_02902 0.14 -0.1 403,754 + BACOVA_02902 0.14 +2.7 403,755 - BACOVA_02902 0.14 +0.7 403,755 - BACOVA_02902 0.14 +0.5 403,761 + BACOVA_02902 0.14 -0.7 403,762 - BACOVA_02902 0.14 -3.3 403,777 + BACOVA_02902 0.15 -1.9 403,782 + BACOVA_02902 0.15 -1.3 403,783 - BACOVA_02902 0.16 -1.1 403,797 - BACOVA_02902 0.16 +1.2 403,832 + BACOVA_02902 0.18 +1.8 403,832 + BACOVA_02902 0.18 +2.5 403,834 + BACOVA_02902 0.18 -1.1 403,834 + BACOVA_02902 0.18 +1.9 403,835 - BACOVA_02902 0.18 +1.6 403,850 - BACOVA_02902 0.19 -0.5 403,866 + BACOVA_02902 0.20 -0.8 403,893 - BACOVA_02902 0.21 -0.3 403,893 - BACOVA_02902 0.21 -1.3 403,954 + BACOVA_02902 0.24 +1.0 404,042 - BACOVA_02902 0.29 +1.3 404,115 - BACOVA_02902 0.32 -0.8 404,117 + BACOVA_02902 0.33 -2.0 404,117 + BACOVA_02902 0.33 +1.1 404,117 + BACOVA_02902 0.33 -0.7 404,118 - BACOVA_02902 0.33 +0.8
Or see this region's nucleotide sequence