Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02656 and BACOVA_02657 are separated by 7 nucleotides BACOVA_02657 and BACOVA_02658 overlap by 156 nucleotides BACOVA_02658 and BACOVA_02659 are separated by 211 nucleotides BACOVA_02659 and BACOVA_02660 are separated by 200 nucleotides BACOVA_02660 and BACOVA_02661 are separated by 110 nucleotides
BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553
_02656
BACOVA_02657: BACOVA_02657 - hypothetical protein, at 57,561 to 57,782
_02657
BACOVA_02658: BACOVA_02658 - hypothetical protein, at 57,627 to 57,755
_02658
BACOVA_02659: BACOVA_02659 - glycosyl hydrolase family 3 N-terminal domain protein, at 57,967 to 60,327
_02659
BACOVA_02660: BACOVA_02660 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 60,528 to 60,848
_02660
BACOVA_02661: BACOVA_02661 - hypothetical protein, at 60,959 to 62,554
_02661
Position (kb) 57
58
59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 57.052 kb on + strand, within BACOVA_02656 at 57.053 kb on - strand, within BACOVA_02656 at 57.054 kb on + strand, within BACOVA_02656 at 57.054 kb on + strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.055 kb on - strand, within BACOVA_02656 at 57.057 kb on + strand, within BACOVA_02656 at 57.058 kb on - strand, within BACOVA_02656 at 57.069 kb on - strand, within BACOVA_02656 at 57.190 kb on + strand, within BACOVA_02656 at 57.242 kb on + strand, within BACOVA_02656 at 57.243 kb on - strand, within BACOVA_02656 at 57.246 kb on + strand, within BACOVA_02656 at 57.247 kb on - strand, within BACOVA_02656 at 57.306 kb on + strand, within BACOVA_02656 at 57.309 kb on - strand, within BACOVA_02656 at 57.311 kb on + strand, within BACOVA_02656 at 57.312 kb on - strand, within BACOVA_02656 at 57.354 kb on + strand, within BACOVA_02656 at 57.391 kb on - strand, within BACOVA_02656 at 57.485 kb on - strand at 57.487 kb on + strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.530 kb on - strand at 57.654 kb on - strand at 57.657 kb on - strand at 57.702 kb on - strand at 57.722 kb on + strand at 57.746 kb on + strand at 57.810 kb on - strand at 57.816 kb on - strand at 57.816 kb on - strand at 57.816 kb on - strand at 57.840 kb on + strand at 57.840 kb on + strand at 57.850 kb on + strand at 57.863 kb on - strand at 57.880 kb on - strand at 57.923 kb on - strand at 57.939 kb on + strand at 57.940 kb on - strand at 57.959 kb on - strand at 57.990 kb on - strand at 57.990 kb on - strand at 57.992 kb on + strand at 57.992 kb on + strand at 57.992 kb on + strand at 57.993 kb on - strand at 57.993 kb on - strand at 57.995 kb on + strand at 58.068 kb on + strand at 58.175 kb on + strand at 58.228 kb on + strand, within BACOVA_02659 at 58.228 kb on + strand, within BACOVA_02659 at 58.230 kb on + strand, within BACOVA_02659 at 58.231 kb on - strand, within BACOVA_02659 at 58.235 kb on + strand, within BACOVA_02659 at 58.236 kb on - strand, within BACOVA_02659 at 58.378 kb on + strand, within BACOVA_02659 at 58.395 kb on + strand, within BACOVA_02659 at 58.471 kb on + strand, within BACOVA_02659 at 58.472 kb on - strand, within BACOVA_02659 at 58.472 kb on - strand, within BACOVA_02659 at 58.524 kb on - strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.548 kb on + strand, within BACOVA_02659 at 58.561 kb on + strand, within BACOVA_02659 at 58.561 kb on + strand, within BACOVA_02659 at 58.562 kb on - strand, within BACOVA_02659 at 58.562 kb on - strand, within BACOVA_02659 at 58.655 kb on + strand, within BACOVA_02659 at 58.656 kb on - strand, within BACOVA_02659 at 58.656 kb on - strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.675 kb on + strand, within BACOVA_02659 at 58.692 kb on - strand, within BACOVA_02659 at 58.741 kb on - strand, within BACOVA_02659 at 58.778 kb on + strand, within BACOVA_02659 at 58.779 kb on - strand, within BACOVA_02659 at 58.861 kb on + strand, within BACOVA_02659 at 58.921 kb on - strand, within BACOVA_02659 at 59.066 kb on + strand, within BACOVA_02659 at 59.067 kb on - strand, within BACOVA_02659 at 59.070 kb on + strand, within BACOVA_02659 at 59.093 kb on + strand, within BACOVA_02659 at 59.161 kb on + strand, within BACOVA_02659 at 59.333 kb on - strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.334 kb on + strand, within BACOVA_02659 at 59.335 kb on - strand, within BACOVA_02659 at 59.335 kb on - strand, within BACOVA_02659 at 59.363 kb on - strand, within BACOVA_02659 at 59.374 kb on + strand, within BACOVA_02659 at 59.375 kb on - strand, within BACOVA_02659 at 59.424 kb on + strand, within BACOVA_02659 at 59.424 kb on + strand, within BACOVA_02659 at 59.425 kb on - strand, within BACOVA_02659 at 59.425 kb on - strand, within BACOVA_02659 at 59.428 kb on + strand, within BACOVA_02659 at 59.428 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.446 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.455 kb on + strand, within BACOVA_02659 at 59.532 kb on + strand, within BACOVA_02659 at 59.532 kb on + strand, within BACOVA_02659 at 59.561 kb on - strand, within BACOVA_02659 at 59.592 kb on + strand, within BACOVA_02659 at 59.686 kb on - strand, within BACOVA_02659 at 59.686 kb on - strand, within BACOVA_02659 at 59.694 kb on + strand, within BACOVA_02659 at 59.695 kb on - strand, within BACOVA_02659 at 59.696 kb on + strand, within BACOVA_02659 at 59.697 kb on - strand, within BACOVA_02659 at 59.743 kb on + strand, within BACOVA_02659 at 59.743 kb on + strand, within BACOVA_02659 at 59.763 kb on + strand, within BACOVA_02659 at 59.763 kb on + strand, within BACOVA_02659 at 59.823 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.842 kb on + strand, within BACOVA_02659 at 59.887 kb on + strand, within BACOVA_02659 at 59.888 kb on - strand, within BACOVA_02659 at 59.893 kb on + strand, within BACOVA_02659 at 59.894 kb on - strand, within BACOVA_02659 at 59.894 kb on - strand, within BACOVA_02659 at 59.941 kb on + strand, within BACOVA_02659 at 59.956 kb on + strand, within BACOVA_02659 at 59.957 kb on - strand, within BACOVA_02659 at 59.972 kb on + strand, within BACOVA_02659 at 59.977 kb on - strand, within BACOVA_02659 at 60.008 kb on + strand, within BACOVA_02659 at 60.008 kb on + strand, within BACOVA_02659 at 60.023 kb on + strand, within BACOVA_02659 at 60.080 kb on + strand, within BACOVA_02659 at 60.081 kb on - strand, within BACOVA_02659 at 60.268 kb on - strand at 60.273 kb on - strand at 60.312 kb on + strand at 60.347 kb on + strand at 60.349 kb on + strand at 60.350 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.448 kb on + strand at 60.460 kb on - strand at 60.474 kb on + strand at 60.475 kb on - strand at 60.475 kb on - strand at 60.488 kb on + strand at 60.491 kb on - strand at 60.491 kb on - strand at 60.503 kb on + strand at 60.520 kb on + strand at 60.520 kb on + strand at 60.527 kb on - strand at 60.546 kb on - strand at 60.546 kb on - strand at 60.599 kb on - strand, within BACOVA_02660 at 60.605 kb on + strand, within BACOVA_02660 at 60.613 kb on + strand, within BACOVA_02660 at 60.613 kb on + strand, within BACOVA_02660 at 60.614 kb on - strand, within BACOVA_02660 at 60.614 kb on - strand, within BACOVA_02660 at 60.688 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.690 kb on + strand, within BACOVA_02660 at 60.695 kb on + strand, within BACOVA_02660 at 60.696 kb on - strand, within BACOVA_02660 at 60.696 kb on - strand, within BACOVA_02660 at 60.699 kb on + strand, within BACOVA_02660 at 60.699 kb on + strand, within BACOVA_02660 at 60.700 kb on - strand, within BACOVA_02660 at 60.700 kb on - strand, within BACOVA_02660 at 60.701 kb on + strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.702 kb on - strand, within BACOVA_02660 at 60.820 kb on + strand at 60.830 kb on + strand at 60.840 kb on - strand at 60.865 kb on + strand at 60.865 kb on + strand at 60.885 kb on + strand at 60.885 kb on + strand at 60.893 kb on + strand at 60.894 kb on - strand at 60.896 kb on + strand at 60.896 kb on + strand at 60.918 kb on - strand at 60.942 kb on + strand at 60.961 kb on - strand at 60.982 kb on + strand at 60.983 kb on - strand at 60.983 kb on - strand at 60.983 kb on - strand at 61.069 kb on - strand at 61.092 kb on - strand at 61.092 kb on - strand at 61.109 kb on - strand at 61.139 kb on - strand, within BACOVA_02661 at 61.139 kb on - strand, within BACOVA_02661 at 61.145 kb on + strand, within BACOVA_02661 at 61.146 kb on - strand, within BACOVA_02661 at 61.155 kb on + strand, within BACOVA_02661 at 61.174 kb on + strand, within BACOVA_02661 at 61.175 kb on - strand, within BACOVA_02661 at 61.176 kb on + strand, within BACOVA_02661 at 61.177 kb on - strand, within BACOVA_02661 at 61.288 kb on + strand, within BACOVA_02661 at 61.290 kb on + strand, within BACOVA_02661 at 61.290 kb on + strand, within BACOVA_02661 at 61.294 kb on + strand, within BACOVA_02661 at 61.299 kb on - strand, within BACOVA_02661
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 57,052 + BACOVA_02656 0.66 -0.7 57,053 - BACOVA_02656 0.66 -1.1 57,054 + BACOVA_02656 0.66 -0.8 57,054 + BACOVA_02656 0.66 -2.1 57,055 - BACOVA_02656 0.66 -2.1 57,055 - BACOVA_02656 0.66 +0.3 57,055 - BACOVA_02656 0.66 -2.8 57,057 + BACOVA_02656 0.66 +0.4 57,058 - BACOVA_02656 0.66 -3.7 57,069 - BACOVA_02656 0.67 +0.5 57,190 + BACOVA_02656 0.75 -2.5 57,242 + BACOVA_02656 0.79 +2.4 57,243 - BACOVA_02656 0.79 -1.1 57,246 + BACOVA_02656 0.79 +0.5 57,247 - BACOVA_02656 0.79 -0.6 57,306 + BACOVA_02656 0.83 -1.1 57,309 - BACOVA_02656 0.83 +0.0 57,311 + BACOVA_02656 0.83 +0.5 57,312 - BACOVA_02656 0.83 +0.7 57,354 + BACOVA_02656 0.86 -0.5 57,391 - BACOVA_02656 0.89 -1.9 57,485 - -2.6 57,487 + -1.3 57,530 - -0.1 57,530 - -1.2 57,530 - -0.8 57,530 - +0.2 57,654 - +1.3 57,657 - +2.3 57,702 - -1.1 57,722 + +0.6 57,746 + -3.1 57,810 - -3.5 57,816 - -0.1 57,816 - -0.8 57,816 - -2.1 57,840 + +1.4 57,840 + -2.3 57,850 + -1.1 57,863 - +1.3 57,880 - +1.3 57,923 - +1.8 57,939 + -0.1 57,940 - -0.6 57,959 - +0.1 57,990 - -0.1 57,990 - -0.8 57,992 + -0.8 57,992 + -1.4 57,992 + -2.2 57,993 - +0.4 57,993 - +0.4 57,995 + -2.0 58,068 + +0.8 58,175 + -0.5 58,228 + BACOVA_02659 0.11 +0.1 58,228 + BACOVA_02659 0.11 +1.0 58,230 + BACOVA_02659 0.11 -1.3 58,231 - BACOVA_02659 0.11 -2.3 58,235 + BACOVA_02659 0.11 -0.7 58,236 - BACOVA_02659 0.11 -1.3 58,378 + BACOVA_02659 0.17 +0.9 58,395 + BACOVA_02659 0.18 +2.3 58,471 + BACOVA_02659 0.21 -1.1 58,472 - BACOVA_02659 0.21 -2.3 58,472 - BACOVA_02659 0.21 +1.8 58,524 - BACOVA_02659 0.24 +0.3 58,548 + BACOVA_02659 0.25 -1.7 58,548 + BACOVA_02659 0.25 -0.6 58,548 + BACOVA_02659 0.25 +0.1 58,548 + BACOVA_02659 0.25 +3.4 58,561 + BACOVA_02659 0.25 +0.9 58,561 + BACOVA_02659 0.25 +1.1 58,562 - BACOVA_02659 0.25 -1.7 58,562 - BACOVA_02659 0.25 +0.6 58,655 + BACOVA_02659 0.29 -2.1 58,656 - BACOVA_02659 0.29 +1.4 58,656 - BACOVA_02659 0.29 +2.4 58,675 + BACOVA_02659 0.30 +2.1 58,675 + BACOVA_02659 0.30 -3.9 58,675 + BACOVA_02659 0.30 +2.7 58,692 - BACOVA_02659 0.31 -0.7 58,741 - BACOVA_02659 0.33 -1.2 58,778 + BACOVA_02659 0.34 -1.2 58,779 - BACOVA_02659 0.34 -0.8 58,861 + BACOVA_02659 0.38 +1.2 58,921 - BACOVA_02659 0.40 -2.6 59,066 + BACOVA_02659 0.47 +1.0 59,067 - BACOVA_02659 0.47 +3.0 59,070 + BACOVA_02659 0.47 +2.8 59,093 + BACOVA_02659 0.48 -0.1 59,161 + BACOVA_02659 0.51 -1.7 59,333 - BACOVA_02659 0.58 +2.0 59,334 + BACOVA_02659 0.58 -2.8 59,334 + BACOVA_02659 0.58 -0.9 59,334 + BACOVA_02659 0.58 +1.0 59,335 - BACOVA_02659 0.58 -1.7 59,335 - BACOVA_02659 0.58 +1.6 59,363 - BACOVA_02659 0.59 -1.4 59,374 + BACOVA_02659 0.60 -0.1 59,375 - BACOVA_02659 0.60 -2.0 59,424 + BACOVA_02659 0.62 -1.0 59,424 + BACOVA_02659 0.62 -0.1 59,425 - BACOVA_02659 0.62 +0.5 59,425 - BACOVA_02659 0.62 +1.2 59,428 + BACOVA_02659 0.62 -2.3 59,428 + BACOVA_02659 0.62 -1.9 59,446 + BACOVA_02659 0.63 +3.2 59,446 + BACOVA_02659 0.63 +1.3 59,446 + BACOVA_02659 0.63 -1.5 59,455 + BACOVA_02659 0.63 +4.0 59,455 + BACOVA_02659 0.63 -0.3 59,455 + BACOVA_02659 0.63 -1.1 59,532 + BACOVA_02659 0.66 -1.8 59,532 + BACOVA_02659 0.66 +1.2 59,561 - BACOVA_02659 0.68 +2.7 59,592 + BACOVA_02659 0.69 -1.3 59,686 - BACOVA_02659 0.73 -3.6 59,686 - BACOVA_02659 0.73 +2.0 59,694 + BACOVA_02659 0.73 +1.9 59,695 - BACOVA_02659 0.73 -1.5 59,696 + BACOVA_02659 0.73 +0.8 59,697 - BACOVA_02659 0.73 +1.2 59,743 + BACOVA_02659 0.75 +1.5 59,743 + BACOVA_02659 0.75 +0.2 59,763 + BACOVA_02659 0.76 -0.8 59,763 + BACOVA_02659 0.76 +1.1 59,823 + BACOVA_02659 0.79 +3.6 59,842 + BACOVA_02659 0.79 +1.4 59,842 + BACOVA_02659 0.79 +1.5 59,842 + BACOVA_02659 0.79 +0.5 59,887 + BACOVA_02659 0.81 +0.6 59,888 - BACOVA_02659 0.81 -1.3 59,893 + BACOVA_02659 0.82 -0.5 59,894 - BACOVA_02659 0.82 -1.3 59,894 - BACOVA_02659 0.82 +0.5 59,941 + BACOVA_02659 0.84 +1.0 59,956 + BACOVA_02659 0.84 +0.2 59,957 - BACOVA_02659 0.84 +0.9 59,972 + BACOVA_02659 0.85 +0.4 59,977 - BACOVA_02659 0.85 +2.2 60,008 + BACOVA_02659 0.86 +0.9 60,008 + BACOVA_02659 0.86 -1.7 60,023 + BACOVA_02659 0.87 -0.5 60,080 + BACOVA_02659 0.89 +0.9 60,081 - BACOVA_02659 0.90 -0.5 60,268 - +1.0 60,273 - -0.4 60,312 + -1.1 60,347 + +3.9 60,349 + -1.1 60,350 - -1.7 60,352 - -1.7 60,352 - +1.8 60,352 - +4.0 60,352 - -0.5 60,448 + -0.2 60,460 - +1.0 60,474 + -0.8 60,475 - -0.2 60,475 - -1.3 60,488 + +0.9 60,491 - -2.2 60,491 - -1.7 60,503 + -1.3 60,520 + +0.8 60,520 + -2.1 60,527 - +0.4 60,546 - +1.8 60,546 - -2.3 60,599 - BACOVA_02660 0.22 -1.5 60,605 + BACOVA_02660 0.24 -2.1 60,613 + BACOVA_02660 0.26 -0.8 60,613 + BACOVA_02660 0.26 -0.6 60,614 - BACOVA_02660 0.27 -0.3 60,614 - BACOVA_02660 0.27 +1.2 60,688 + BACOVA_02660 0.50 -1.1 60,690 + BACOVA_02660 0.50 -1.7 60,690 + BACOVA_02660 0.50 -2.7 60,690 + BACOVA_02660 0.50 -0.4 60,690 + BACOVA_02660 0.50 +0.5 60,690 + BACOVA_02660 0.50 -1.0 60,695 + BACOVA_02660 0.52 -2.4 60,696 - BACOVA_02660 0.52 -1.5 60,696 - BACOVA_02660 0.52 -1.4 60,699 + BACOVA_02660 0.53 +1.1 60,699 + BACOVA_02660 0.53 -0.4 60,700 - BACOVA_02660 0.54 -3.2 60,700 - BACOVA_02660 0.54 -2.4 60,701 + BACOVA_02660 0.54 -1.8 60,702 - BACOVA_02660 0.54 +1.5 60,702 - BACOVA_02660 0.54 +1.3 60,702 - BACOVA_02660 0.54 +2.6 60,820 + +0.6 60,830 + +0.5 60,840 - -1.3 60,865 + +0.9 60,865 + -1.3 60,885 + +0.8 60,885 + +0.3 60,893 + +1.0 60,894 - +0.4 60,896 + -0.8 60,896 + +1.1 60,918 - -1.5 60,942 + +0.0 60,961 - -0.4 60,982 + -0.5 60,983 - +0.8 60,983 - -2.6 60,983 - +0.5 61,069 - -0.8 61,092 - -1.2 61,092 - -1.9 61,109 - +0.8 61,139 - BACOVA_02661 0.11 -1.9 61,139 - BACOVA_02661 0.11 +0.3 61,145 + BACOVA_02661 0.12 +0.7 61,146 - BACOVA_02661 0.12 -1.9 61,155 + BACOVA_02661 0.12 +0.7 61,174 + BACOVA_02661 0.13 +1.2 61,175 - BACOVA_02661 0.14 +1.8 61,176 + BACOVA_02661 0.14 -0.7 61,177 - BACOVA_02661 0.14 -1.9 61,288 + BACOVA_02661 0.21 -0.2 61,290 + BACOVA_02661 0.21 +0.1 61,290 + BACOVA_02661 0.21 -0.4 61,294 + BACOVA_02661 0.21 +0.4 61,299 - BACOVA_02661 0.21 -3.0
Or see this region's nucleotide sequence