Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01553 and BACOVA_01554 are separated by 452 nucleotides BACOVA_01554 and BACOVA_01555 are separated by 316 nucleotides
BACOVA_01553: BACOVA_01553 - site-specific recombinase, phage integrase family, at 52,732 to 54,063
_01553
BACOVA_01554: BACOVA_01554 - hypothetical protein, at 54,516 to 55,001
_01554
BACOVA_01555: BACOVA_01555 - DNA (cytosine-5-)-methyltransferase, at 55,318 to 56,571
_01555
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 53.601 kb on + strand, within BACOVA_01553 at 53.602 kb on - strand, within BACOVA_01553 at 53.603 kb on + strand, within BACOVA_01553 at 53.611 kb on + strand, within BACOVA_01553 at 53.615 kb on + strand, within BACOVA_01553 at 53.616 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.845 kb on - strand, within BACOVA_01553 at 53.846 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.894 kb on + strand, within BACOVA_01553 at 53.895 kb on - strand, within BACOVA_01553 at 53.931 kb on + strand at 53.931 kb on + strand at 53.932 kb on - strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.953 kb on - strand at 53.953 kb on - strand at 53.997 kb on + strand at 54.001 kb on + strand at 54.076 kb on + strand at 54.087 kb on + strand at 54.087 kb on + strand at 54.088 kb on - strand at 54.143 kb on + strand at 54.153 kb on + strand at 54.167 kb on - strand at 54.167 kb on - strand at 54.213 kb on + strand at 54.285 kb on - strand at 54.522 kb on - strand at 54.547 kb on - strand at 54.547 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.565 kb on - strand, within BACOVA_01554 at 54.565 kb on - strand, within BACOVA_01554 at 54.660 kb on + strand, within BACOVA_01554 at 54.725 kb on + strand, within BACOVA_01554 at 54.780 kb on + strand, within BACOVA_01554 at 54.781 kb on - strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.891 kb on - strand, within BACOVA_01554 at 54.893 kb on - strand, within BACOVA_01554 at 54.917 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 55.004 kb on - strand at 55.010 kb on + strand at 55.011 kb on - strand at 55.011 kb on - strand at 55.016 kb on - strand at 55.019 kb on + strand at 55.022 kb on + strand at 55.023 kb on - strand at 55.048 kb on - strand at 55.112 kb on - strand at 55.114 kb on + strand at 55.119 kb on + strand at 55.127 kb on + strand at 55.134 kb on + strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.144 kb on + strand at 55.144 kb on + strand at 55.145 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.149 kb on + strand at 55.150 kb on - strand at 55.159 kb on + strand at 55.169 kb on + strand at 55.170 kb on - strand at 55.170 kb on - strand at 55.173 kb on - strand at 55.189 kb on + strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.210 kb on + strand at 55.279 kb on - strand at 55.283 kb on - strand at 55.284 kb on + strand at 55.285 kb on - strand at 55.287 kb on - strand at 55.330 kb on - strand at 55.380 kb on - strand at 55.390 kb on - strand at 55.390 kb on - strand at 55.456 kb on - strand, within BACOVA_01555 at 55.636 kb on - strand, within BACOVA_01555 at 55.651 kb on - strand, within BACOVA_01555 at 55.788 kb on - strand, within BACOVA_01555 at 55.893 kb on - strand, within BACOVA_01555 at 55.915 kb on - strand, within BACOVA_01555
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 53,601 + BACOVA_01553 0.65 -1.8 53,602 - BACOVA_01553 0.65 +0.4 53,603 + BACOVA_01553 0.65 -0.6 53,611 + BACOVA_01553 0.66 -0.3 53,615 + BACOVA_01553 0.66 -0.8 53,616 - BACOVA_01553 0.66 -1.1 53,671 - BACOVA_01553 0.70 -0.2 53,671 - BACOVA_01553 0.70 -1.1 53,794 - BACOVA_01553 0.80 -1.3 53,794 - BACOVA_01553 0.80 -0.1 53,845 - BACOVA_01553 0.84 +1.3 53,846 + BACOVA_01553 0.84 +1.0 53,887 + BACOVA_01553 0.87 -1.8 53,887 + BACOVA_01553 0.87 -3.4 53,894 + BACOVA_01553 0.87 -1.3 53,895 - BACOVA_01553 0.87 +0.4 53,931 + -2.4 53,931 + +0.7 53,932 - +0.4 53,952 + +1.9 53,952 + +1.5 53,952 + +0.0 53,953 - -1.1 53,953 - -1.6 53,997 + -0.8 54,001 + -0.3 54,076 + -1.8 54,087 + -1.2 54,087 + +4.0 54,088 - -1.1 54,143 + +0.3 54,153 + +0.9 54,167 - -0.1 54,167 - -2.2 54,213 + +1.1 54,285 - +0.5 54,522 - -0.3 54,547 - -0.1 54,547 - -0.9 54,559 - +0.9 54,559 - -1.5 54,559 - -0.7 54,560 + -0.8 54,560 + +0.9 54,560 + -0.1 54,560 + -1.3 54,560 + -1.1 54,560 + -2.3 54,561 - -0.1 54,561 - -1.1 54,561 - -1.9 54,564 + -0.6 54,564 + +0.1 54,564 + -1.4 54,565 - BACOVA_01554 0.10 -2.4 54,565 - BACOVA_01554 0.10 -2.2 54,660 + BACOVA_01554 0.30 -0.5 54,725 + BACOVA_01554 0.43 -2.5 54,780 + BACOVA_01554 0.54 +0.4 54,781 - BACOVA_01554 0.55 +3.2 54,888 + BACOVA_01554 0.77 +1.3 54,888 + BACOVA_01554 0.77 -0.2 54,888 + BACOVA_01554 0.77 -0.4 54,889 - BACOVA_01554 0.77 -2.7 54,889 - BACOVA_01554 0.77 -2.4 54,889 - BACOVA_01554 0.77 +1.7 54,889 - BACOVA_01554 0.77 +0.5 54,889 - BACOVA_01554 0.77 -2.2 54,891 - BACOVA_01554 0.77 -1.2 54,893 - BACOVA_01554 0.78 +0.6 54,917 - BACOVA_01554 0.83 -0.6 54,922 - BACOVA_01554 0.84 -1.8 54,922 - BACOVA_01554 0.84 -0.0 55,004 - +1.2 55,010 + -1.6 55,011 - +2.1 55,011 - +1.9 55,016 - +0.2 55,019 + -1.2 55,022 + -2.2 55,023 - +0.5 55,048 - +0.9 55,112 - -1.9 55,114 + -0.3 55,119 + +0.7 55,127 + -1.3 55,134 + -0.1 55,135 - +3.2 55,135 - +2.1 55,135 - +1.6 55,144 + -1.1 55,144 + +0.5 55,145 - +1.8 55,147 - -2.6 55,147 - +0.3 55,147 - -1.3 55,149 + +0.2 55,150 - +1.0 55,159 + -0.2 55,169 + +0.5 55,170 - +2.2 55,170 - -0.9 55,173 - -0.5 55,189 + +0.5 55,208 - -0.6 55,208 - +1.0 55,208 - -2.8 55,208 - -1.3 55,210 + -1.1 55,279 - +0.5 55,283 - +1.3 55,284 + -2.4 55,285 - +0.5 55,287 - -1.5 55,330 - +0.6 55,380 - -0.9 55,390 - -0.1 55,390 - +1.9 55,456 - BACOVA_01555 0.11 -0.8 55,636 - BACOVA_01555 0.25 +1.2 55,651 - BACOVA_01555 0.27 +0.9 55,788 - BACOVA_01555 0.37 -0.8 55,893 - BACOVA_01555 0.46 +1.1 55,915 - BACOVA_01555 0.48 +1.5
Or see this region's nucleotide sequence