Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01538 and BACOVA_01539 are separated by 144 nucleotides BACOVA_01539 and BACOVA_01540 are separated by 60 nucleotides
BACOVA_01538: BACOVA_01538 - MIP family channel protein, at 36,123 to 36,782
_01538
BACOVA_01539: BACOVA_01539 - hypothetical protein, at 36,927 to 37,430
_01539
BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660
_01540
Position (kb)
36
37
38 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 35.960 kb on - strand at 35.962 kb on + strand at 36.036 kb on - strand at 36.037 kb on + strand at 36.037 kb on + strand at 36.037 kb on + strand at 36.037 kb on + strand at 36.037 kb on + strand at 36.038 kb on - strand at 36.038 kb on - strand at 36.038 kb on - strand at 36.058 kb on + strand at 36.059 kb on - strand at 36.065 kb on - strand at 36.065 kb on - strand at 36.065 kb on - strand at 36.067 kb on + strand at 36.067 kb on + strand at 36.082 kb on + strand at 36.082 kb on + strand at 36.136 kb on - strand at 36.160 kb on - strand at 36.209 kb on + strand, within BACOVA_01538 at 36.209 kb on + strand, within BACOVA_01538 at 36.210 kb on - strand, within BACOVA_01538 at 36.282 kb on - strand, within BACOVA_01538 at 36.285 kb on + strand, within BACOVA_01538 at 36.285 kb on + strand, within BACOVA_01538 at 36.285 kb on + strand, within BACOVA_01538 at 36.286 kb on - strand, within BACOVA_01538 at 36.290 kb on + strand, within BACOVA_01538 at 36.290 kb on + strand, within BACOVA_01538 at 36.290 kb on + strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.291 kb on - strand, within BACOVA_01538 at 36.344 kb on + strand, within BACOVA_01538 at 36.345 kb on - strand, within BACOVA_01538 at 36.345 kb on - strand, within BACOVA_01538 at 36.370 kb on - strand, within BACOVA_01538 at 36.370 kb on - strand, within BACOVA_01538 at 36.392 kb on + strand, within BACOVA_01538 at 36.392 kb on + strand, within BACOVA_01538 at 36.392 kb on + strand, within BACOVA_01538 at 36.393 kb on - strand, within BACOVA_01538 at 36.507 kb on + strand, within BACOVA_01538 at 36.528 kb on + strand, within BACOVA_01538 at 36.533 kb on + strand, within BACOVA_01538 at 36.535 kb on + strand, within BACOVA_01538 at 36.536 kb on - strand, within BACOVA_01538 at 36.536 kb on - strand, within BACOVA_01538 at 36.632 kb on - strand, within BACOVA_01538 at 36.798 kb on - strand at 36.805 kb on + strand at 36.835 kb on + strand at 36.843 kb on - strand at 36.850 kb on + strand at 36.850 kb on + strand at 36.928 kb on + strand at 36.928 kb on + strand at 36.988 kb on + strand, within BACOVA_01539 at 36.989 kb on - strand, within BACOVA_01539 at 36.989 kb on - strand, within BACOVA_01539 at 37.016 kb on + strand, within BACOVA_01539 at 37.017 kb on - strand, within BACOVA_01539 at 37.096 kb on + strand, within BACOVA_01539 at 37.186 kb on + strand, within BACOVA_01539 at 37.187 kb on - strand, within BACOVA_01539 at 37.273 kb on + strand, within BACOVA_01539 at 37.274 kb on - strand, within BACOVA_01539 at 37.274 kb on - strand, within BACOVA_01539 at 37.316 kb on + strand, within BACOVA_01539 at 37.316 kb on + strand, within BACOVA_01539 at 37.317 kb on - strand, within BACOVA_01539 at 37.319 kb on + strand, within BACOVA_01539 at 37.319 kb on + strand, within BACOVA_01539 at 37.319 kb on + strand, within BACOVA_01539 at 37.319 kb on + strand, within BACOVA_01539 at 37.319 kb on + strand, within BACOVA_01539 at 37.320 kb on - strand, within BACOVA_01539 at 37.321 kb on + strand, within BACOVA_01539 at 37.321 kb on + strand, within BACOVA_01539 at 37.321 kb on + strand, within BACOVA_01539 at 37.322 kb on - strand, within BACOVA_01539 at 37.322 kb on - strand, within BACOVA_01539 at 37.322 kb on - strand, within BACOVA_01539 at 37.323 kb on + strand, within BACOVA_01539 at 37.324 kb on - strand, within BACOVA_01539 at 37.326 kb on + strand, within BACOVA_01539 at 37.327 kb on - strand, within BACOVA_01539 at 37.430 kb on + strand at 37.490 kb on - strand at 37.504 kb on - strand at 37.586 kb on + strand at 37.603 kb on - strand at 37.609 kb on + strand, within BACOVA_01540 at 37.615 kb on + strand, within BACOVA_01540 at 37.616 kb on - strand, within BACOVA_01540 at 37.616 kb on - strand, within BACOVA_01540 at 37.616 kb on - strand, within BACOVA_01540 at 37.748 kb on + strand, within BACOVA_01540 at 37.749 kb on - strand, within BACOVA_01540 at 37.769 kb on + strand, within BACOVA_01540 at 37.770 kb on - strand, within BACOVA_01540 at 37.925 kb on + strand, within BACOVA_01540 at 37.925 kb on + strand, within BACOVA_01540 at 37.946 kb on - strand, within BACOVA_01540 at 37.999 kb on - strand, within BACOVA_01540 at 38.004 kb on + strand, within BACOVA_01540 at 38.004 kb on + strand, within BACOVA_01540 at 38.295 kb on + strand, within BACOVA_01540 at 38.314 kb on + strand, within BACOVA_01540 at 38.341 kb on + strand, within BACOVA_01540
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 35,960 - +1.1 35,962 + -3.4 36,036 - +4.6 36,037 + +2.0 36,037 + +1.5 36,037 + +0.5 36,037 + -1.1 36,037 + +1.3 36,038 - +1.2 36,038 - -0.1 36,038 - +3.3 36,058 + +1.5 36,059 - +2.9 36,065 - +3.3 36,065 - +3.0 36,065 - +1.0 36,067 + +0.8 36,067 + -1.5 36,082 + +0.8 36,082 + -1.6 36,136 - +0.5 36,160 - +0.1 36,209 + BACOVA_01538 0.13 -0.5 36,209 + BACOVA_01538 0.13 -0.7 36,210 - BACOVA_01538 0.13 +2.5 36,282 - BACOVA_01538 0.24 +0.9 36,285 + BACOVA_01538 0.25 -2.5 36,285 + BACOVA_01538 0.25 -0.8 36,285 + BACOVA_01538 0.25 +0.6 36,286 - BACOVA_01538 0.25 +1.7 36,290 + BACOVA_01538 0.25 -1.7 36,290 + BACOVA_01538 0.25 -0.8 36,290 + BACOVA_01538 0.25 +1.7 36,291 - BACOVA_01538 0.25 +2.8 36,291 - BACOVA_01538 0.25 +3.5 36,291 - BACOVA_01538 0.25 +3.6 36,291 - BACOVA_01538 0.25 +1.3 36,291 - BACOVA_01538 0.25 +2.5 36,291 - BACOVA_01538 0.25 +0.8 36,344 + BACOVA_01538 0.33 -0.1 36,345 - BACOVA_01538 0.34 +0.6 36,345 - BACOVA_01538 0.34 +0.8 36,370 - BACOVA_01538 0.37 +2.3 36,370 - BACOVA_01538 0.37 +2.3 36,392 + BACOVA_01538 0.41 -1.5 36,392 + BACOVA_01538 0.41 -1.9 36,392 + BACOVA_01538 0.41 +0.6 36,393 - BACOVA_01538 0.41 +1.5 36,507 + BACOVA_01538 0.58 +1.0 36,528 + BACOVA_01538 0.61 +0.3 36,533 + BACOVA_01538 0.62 -3.1 36,535 + BACOVA_01538 0.62 -1.0 36,536 - BACOVA_01538 0.63 +2.8 36,536 - BACOVA_01538 0.63 +3.5 36,632 - BACOVA_01538 0.77 +3.0 36,798 - +1.5 36,805 + +2.1 36,835 + +0.8 36,843 - -0.1 36,850 + -3.4 36,850 + +0.7 36,928 + +1.2 36,928 + -0.5 36,988 + BACOVA_01539 0.12 +0.2 36,989 - BACOVA_01539 0.12 +2.2 36,989 - BACOVA_01539 0.12 +4.2 37,016 + BACOVA_01539 0.18 -0.5 37,017 - BACOVA_01539 0.18 +0.9 37,096 + BACOVA_01539 0.34 +0.6 37,186 + BACOVA_01539 0.51 -1.1 37,187 - BACOVA_01539 0.52 +2.3 37,273 + BACOVA_01539 0.69 +0.5 37,274 - BACOVA_01539 0.69 +2.9 37,274 - BACOVA_01539 0.69 +1.1 37,316 + BACOVA_01539 0.77 +0.9 37,316 + BACOVA_01539 0.77 -2.5 37,317 - BACOVA_01539 0.77 +1.0 37,319 + BACOVA_01539 0.78 -0.9 37,319 + BACOVA_01539 0.78 -3.4 37,319 + BACOVA_01539 0.78 -0.1 37,319 + BACOVA_01539 0.78 -0.3 37,319 + BACOVA_01539 0.78 -0.2 37,320 - BACOVA_01539 0.78 +1.8 37,321 + BACOVA_01539 0.78 -1.4 37,321 + BACOVA_01539 0.78 -1.5 37,321 + BACOVA_01539 0.78 +1.7 37,322 - BACOVA_01539 0.78 +3.6 37,322 - BACOVA_01539 0.78 +2.3 37,322 - BACOVA_01539 0.78 +3.3 37,323 + BACOVA_01539 0.79 +1.0 37,324 - BACOVA_01539 0.79 +2.5 37,326 + BACOVA_01539 0.79 -1.1 37,327 - BACOVA_01539 0.79 +3.2 37,430 + +1.2 37,490 - +0.3 37,504 - -0.0 37,586 + +2.4 37,603 - -0.8 37,609 + BACOVA_01540 0.10 -1.9 37,615 + BACOVA_01540 0.11 +1.4 37,616 - BACOVA_01540 0.11 +1.2 37,616 - BACOVA_01540 0.11 +1.4 37,616 - BACOVA_01540 0.11 +1.7 37,748 + BACOVA_01540 0.22 -0.9 37,749 - BACOVA_01540 0.22 +1.8 37,769 + BACOVA_01540 0.24 +1.9 37,770 - BACOVA_01540 0.24 -0.4 37,925 + BACOVA_01540 0.37 -1.1 37,925 + BACOVA_01540 0.37 -0.6 37,946 - BACOVA_01540 0.39 +1.2 37,999 - BACOVA_01540 0.43 +0.5 38,004 + BACOVA_01540 0.44 -0.4 38,004 + BACOVA_01540 0.44 +0.8 38,295 + BACOVA_01540 0.69 -0.8 38,314 + BACOVA_01540 0.70 +1.3 38,341 + BACOVA_01540 0.73 +1.9
Or see this region's nucleotide sequence