Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00206 and BACOVA_00207 are separated by 83 nucleotides BACOVA_00207 and BACOVA_00208 are separated by 109 nucleotides BACOVA_00208 and BACOVA_00209 are separated by 47 nucleotides BACOVA_00209 and BACOVA_00210 overlap by 1 nucleotides
BACOVA_00206: BACOVA_00206 - hypothetical protein, at 21,799 to 23,373
_00206
BACOVA_00207: BACOVA_00207 - metallo-beta-lactamase domain protein, at 23,457 to 24,116
_00207
BACOVA_00208: BACOVA_00208 - UDP-N-acetylmuramate dehydrogenase, at 24,226 to 25,218
_00208
BACOVA_00209: BACOVA_00209 - hypothetical protein, at 25,266 to 26,114
_00209
BACOVA_00210: BACOVA_00210 - NAD dependent epimerase/dehydratase family protein, at 26,114 to 27,067
_00210
Position (kb)
24
25
26 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 23.327 kb on - strand at 23.357 kb on - strand at 23.464 kb on + strand at 23.465 kb on - strand at 23.465 kb on - strand at 23.468 kb on + strand at 23.468 kb on + strand at 23.469 kb on - strand at 23.538 kb on - strand, within BACOVA_00207 at 23.538 kb on - strand, within BACOVA_00207 at 23.553 kb on + strand, within BACOVA_00207 at 23.553 kb on + strand, within BACOVA_00207 at 23.553 kb on + strand, within BACOVA_00207 at 23.554 kb on - strand, within BACOVA_00207 at 23.555 kb on + strand, within BACOVA_00207 at 23.556 kb on - strand, within BACOVA_00207 at 23.561 kb on - strand, within BACOVA_00207 at 23.621 kb on + strand, within BACOVA_00207 at 23.622 kb on - strand, within BACOVA_00207 at 23.622 kb on - strand, within BACOVA_00207 at 23.664 kb on + strand, within BACOVA_00207 at 23.684 kb on - strand, within BACOVA_00207 at 23.708 kb on + strand, within BACOVA_00207 at 23.717 kb on + strand, within BACOVA_00207 at 23.720 kb on - strand, within BACOVA_00207 at 23.724 kb on + strand, within BACOVA_00207 at 23.724 kb on + strand, within BACOVA_00207 at 23.775 kb on + strand, within BACOVA_00207 at 23.776 kb on - strand, within BACOVA_00207 at 23.923 kb on + strand, within BACOVA_00207 at 24.000 kb on - strand, within BACOVA_00207 at 24.015 kb on + strand, within BACOVA_00207 at 24.101 kb on + strand at 24.102 kb on - strand at 24.220 kb on + strand at 25.233 kb on - strand at 25.238 kb on - strand at 25.238 kb on - strand at 25.240 kb on - strand at 25.246 kb on - strand at 25.246 kb on - strand at 25.246 kb on - strand at 25.278 kb on - strand at 25.278 kb on - strand at 25.278 kb on - strand at 25.292 kb on - strand at 25.410 kb on - strand, within BACOVA_00209 at 25.413 kb on - strand, within BACOVA_00209 at 25.416 kb on - strand, within BACOVA_00209 at 25.438 kb on - strand, within BACOVA_00209 at 25.516 kb on - strand, within BACOVA_00209 at 25.602 kb on - strand, within BACOVA_00209 at 25.602 kb on - strand, within BACOVA_00209 at 25.659 kb on - strand, within BACOVA_00209 at 25.779 kb on - strand, within BACOVA_00209 at 25.779 kb on - strand, within BACOVA_00209 at 25.779 kb on - strand, within BACOVA_00209 at 25.781 kb on - strand, within BACOVA_00209 at 25.781 kb on - strand, within BACOVA_00209 at 25.948 kb on - strand, within BACOVA_00209 at 25.950 kb on - strand, within BACOVA_00209 at 25.974 kb on - strand, within BACOVA_00209 at 25.996 kb on - strand, within BACOVA_00209 at 26.022 kb on - strand, within BACOVA_00209 at 26.025 kb on - strand, within BACOVA_00209 at 26.028 kb on - strand, within BACOVA_00209 at 26.046 kb on - strand at 26.046 kb on - strand at 26.089 kb on - strand at 26.104 kb on - strand at 26.210 kb on - strand, within BACOVA_00210 at 26.210 kb on - strand, within BACOVA_00210 at 26.210 kb on - strand, within BACOVA_00210
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C) remove 23,327 - -1.4 23,357 - +2.6 23,464 + +0.9 23,465 - -1.8 23,465 - -1.3 23,468 + +0.6 23,468 + +0.2 23,469 - +2.3 23,538 - BACOVA_00207 0.12 -3.0 23,538 - BACOVA_00207 0.12 +0.9 23,553 + BACOVA_00207 0.15 +0.2 23,553 + BACOVA_00207 0.15 -0.4 23,553 + BACOVA_00207 0.15 +3.3 23,554 - BACOVA_00207 0.15 +1.3 23,555 + BACOVA_00207 0.15 +3.1 23,556 - BACOVA_00207 0.15 -0.8 23,561 - BACOVA_00207 0.16 -0.8 23,621 + BACOVA_00207 0.25 -2.1 23,622 - BACOVA_00207 0.25 +0.9 23,622 - BACOVA_00207 0.25 +1.6 23,664 + BACOVA_00207 0.31 -0.3 23,684 - BACOVA_00207 0.34 +0.5 23,708 + BACOVA_00207 0.38 +0.9 23,717 + BACOVA_00207 0.39 -0.3 23,720 - BACOVA_00207 0.40 -1.4 23,724 + BACOVA_00207 0.40 -2.0 23,724 + BACOVA_00207 0.40 +1.1 23,775 + BACOVA_00207 0.48 +0.3 23,776 - BACOVA_00207 0.48 -1.3 23,923 + BACOVA_00207 0.71 +0.6 24,000 - BACOVA_00207 0.82 +1.2 24,015 + BACOVA_00207 0.85 +1.8 24,101 + +0.2 24,102 - +3.2 24,220 + -1.7 25,233 - -1.8 25,238 - +1.1 25,238 - -1.3 25,240 - -1.4 25,246 - -2.2 25,246 - -2.1 25,246 - +0.2 25,278 - +0.6 25,278 - +2.1 25,278 - -0.4 25,292 - -0.1 25,410 - BACOVA_00209 0.17 +1.9 25,413 - BACOVA_00209 0.17 -1.6 25,416 - BACOVA_00209 0.18 -2.5 25,438 - BACOVA_00209 0.20 +0.6 25,516 - BACOVA_00209 0.29 -2.4 25,602 - BACOVA_00209 0.40 -2.8 25,602 - BACOVA_00209 0.40 -1.9 25,659 - BACOVA_00209 0.46 -1.7 25,779 - BACOVA_00209 0.60 -1.3 25,779 - BACOVA_00209 0.60 +0.6 25,779 - BACOVA_00209 0.60 +0.6 25,781 - BACOVA_00209 0.61 +0.1 25,781 - BACOVA_00209 0.61 -1.7 25,948 - BACOVA_00209 0.80 +0.8 25,950 - BACOVA_00209 0.81 -0.4 25,974 - BACOVA_00209 0.83 +0.3 25,996 - BACOVA_00209 0.86 +0.6 26,022 - BACOVA_00209 0.89 +0.2 26,025 - BACOVA_00209 0.89 +1.6 26,028 - BACOVA_00209 0.90 +0.1 26,046 - -0.4 26,046 - +0.4 26,089 - -0.0 26,104 - -0.3 26,210 - BACOVA_00210 0.10 -1.9 26,210 - BACOVA_00210 0.10 +0.5 26,210 - BACOVA_00210 0.10 +1.6
Or see this region's nucleotide sequence