Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00206

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00203 and BACOVA_00204 are separated by 8 nucleotidesBACOVA_00204 and BACOVA_00205 are separated by 28 nucleotidesBACOVA_00205 and BACOVA_00206 are separated by 102 nucleotidesBACOVA_00206 and BACOVA_00207 are separated by 83 nucleotidesBACOVA_00207 and BACOVA_00208 are separated by 109 nucleotides BACOVA_00203: BACOVA_00203 - DNA polymerase III, beta subunit, at 20,044 to 21,168 _00203 BACOVA_00204: BACOVA_00204 - hypothetical protein, at 21,177 to 21,293 _00204 BACOVA_00205: BACOVA_00205 - hypothetical protein, at 21,322 to 21,696 _00205 BACOVA_00206: BACOVA_00206 - hypothetical protein, at 21,799 to 23,373 _00206 BACOVA_00207: BACOVA_00207 - metallo-beta-lactamase domain protein, at 23,457 to 24,116 _00207 BACOVA_00208: BACOVA_00208 - UDP-N-acetylmuramate dehydrogenase, at 24,226 to 25,218 _00208 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 21.694 kb on + strandat 21.695 kb on - strandat 21.721 kb on + strandat 21.743 kb on - strandat 21.771 kb on + strandat 21.783 kb on - strandat 21.786 kb on + strandat 21.786 kb on + strandat 21.786 kb on + strandat 21.787 kb on - strandat 21.810 kb on + strandat 21.835 kb on + strandat 21.835 kb on + strandat 21.836 kb on - strandat 21.836 kb on - strandat 21.839 kb on - strandat 21.849 kb on + strandat 21.984 kb on - strand, within BACOVA_00206at 22.033 kb on - strand, within BACOVA_00206at 22.064 kb on + strand, within BACOVA_00206at 22.064 kb on + strand, within BACOVA_00206at 22.077 kb on + strand, within BACOVA_00206at 22.096 kb on + strand, within BACOVA_00206at 22.125 kb on - strand, within BACOVA_00206at 22.164 kb on + strand, within BACOVA_00206at 22.168 kb on + strand, within BACOVA_00206at 22.199 kb on + strand, within BACOVA_00206at 22.199 kb on + strand, within BACOVA_00206at 22.199 kb on + strand, within BACOVA_00206at 22.210 kb on + strand, within BACOVA_00206at 22.211 kb on - strand, within BACOVA_00206at 22.215 kb on + strand, within BACOVA_00206at 22.218 kb on - strand, within BACOVA_00206at 22.227 kb on + strand, within BACOVA_00206at 22.266 kb on + strand, within BACOVA_00206at 22.351 kb on - strand, within BACOVA_00206at 22.351 kb on - strand, within BACOVA_00206at 22.423 kb on - strand, within BACOVA_00206at 22.423 kb on - strand, within BACOVA_00206at 22.506 kb on + strand, within BACOVA_00206at 22.526 kb on + strand, within BACOVA_00206at 22.597 kb on - strand, within BACOVA_00206at 22.644 kb on + strand, within BACOVA_00206at 22.644 kb on + strand, within BACOVA_00206at 22.706 kb on + strand, within BACOVA_00206at 22.707 kb on - strand, within BACOVA_00206at 22.752 kb on + strand, within BACOVA_00206at 22.788 kb on + strand, within BACOVA_00206at 22.788 kb on + strand, within BACOVA_00206at 22.788 kb on + strand, within BACOVA_00206at 22.789 kb on - strand, within BACOVA_00206at 22.789 kb on - strand, within BACOVA_00206at 22.791 kb on - strand, within BACOVA_00206at 22.831 kb on + strand, within BACOVA_00206at 22.948 kb on - strand, within BACOVA_00206at 22.948 kb on - strand, within BACOVA_00206at 22.950 kb on - strand, within BACOVA_00206at 22.981 kb on - strand, within BACOVA_00206at 22.981 kb on - strand, within BACOVA_00206at 23.004 kb on - strand, within BACOVA_00206at 23.043 kb on + strand, within BACOVA_00206at 23.138 kb on - strand, within BACOVA_00206at 23.141 kb on + strand, within BACOVA_00206at 23.218 kb on + strandat 23.327 kb on - strandat 23.357 kb on - strandat 23.464 kb on + strandat 23.465 kb on - strandat 23.465 kb on - strandat 23.468 kb on + strandat 23.468 kb on + strandat 23.469 kb on - strandat 23.538 kb on - strand, within BACOVA_00207at 23.538 kb on - strand, within BACOVA_00207at 23.553 kb on + strand, within BACOVA_00207at 23.553 kb on + strand, within BACOVA_00207at 23.553 kb on + strand, within BACOVA_00207at 23.554 kb on - strand, within BACOVA_00207at 23.555 kb on + strand, within BACOVA_00207at 23.556 kb on - strand, within BACOVA_00207at 23.561 kb on - strand, within BACOVA_00207at 23.621 kb on + strand, within BACOVA_00207at 23.622 kb on - strand, within BACOVA_00207at 23.622 kb on - strand, within BACOVA_00207at 23.664 kb on + strand, within BACOVA_00207at 23.684 kb on - strand, within BACOVA_00207at 23.708 kb on + strand, within BACOVA_00207at 23.717 kb on + strand, within BACOVA_00207at 23.720 kb on - strand, within BACOVA_00207at 23.724 kb on + strand, within BACOVA_00207at 23.724 kb on + strand, within BACOVA_00207at 23.775 kb on + strand, within BACOVA_00207at 23.776 kb on - strand, within BACOVA_00207at 23.923 kb on + strand, within BACOVA_00207at 24.000 kb on - strand, within BACOVA_00207at 24.015 kb on + strand, within BACOVA_00207at 24.101 kb on + strandat 24.102 kb on - strandat 24.220 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
remove
21,694 + +1.3
21,695 - -0.0
21,721 + -1.9
21,743 - -0.8
21,771 + -1.0
21,783 - +0.8
21,786 + -0.3
21,786 + -3.8
21,786 + +1.0
21,787 - -0.2
21,810 + +1.4
21,835 + +3.5
21,835 + -1.9
21,836 - -0.0
21,836 - +1.6
21,839 - -0.2
21,849 + -0.8
21,984 - BACOVA_00206 0.12 -0.1
22,033 - BACOVA_00206 0.15 +0.9
22,064 + BACOVA_00206 0.17 +1.6
22,064 + BACOVA_00206 0.17 +1.6
22,077 + BACOVA_00206 0.18 +0.2
22,096 + BACOVA_00206 0.19 -1.1
22,125 - BACOVA_00206 0.21 +1.1
22,164 + BACOVA_00206 0.23 -0.0
22,168 + BACOVA_00206 0.23 -2.4
22,199 + BACOVA_00206 0.25 -0.6
22,199 + BACOVA_00206 0.25 -3.0
22,199 + BACOVA_00206 0.25 -0.2
22,210 + BACOVA_00206 0.26 -1.8
22,211 - BACOVA_00206 0.26 -0.0
22,215 + BACOVA_00206 0.26 +1.4
22,218 - BACOVA_00206 0.27 -2.4
22,227 + BACOVA_00206 0.27 +0.0
22,266 + BACOVA_00206 0.30 -0.4
22,351 - BACOVA_00206 0.35 -1.6
22,351 - BACOVA_00206 0.35 -2.5
22,423 - BACOVA_00206 0.40 -0.9
22,423 - BACOVA_00206 0.40 +1.6
22,506 + BACOVA_00206 0.45 -2.1
22,526 + BACOVA_00206 0.46 -2.0
22,597 - BACOVA_00206 0.51 -0.8
22,644 + BACOVA_00206 0.54 -0.7
22,644 + BACOVA_00206 0.54 +0.1
22,706 + BACOVA_00206 0.58 -0.8
22,707 - BACOVA_00206 0.58 -1.9
22,752 + BACOVA_00206 0.61 -1.9
22,788 + BACOVA_00206 0.63 +0.7
22,788 + BACOVA_00206 0.63 -1.8
22,788 + BACOVA_00206 0.63 -2.3
22,789 - BACOVA_00206 0.63 +1.1
22,789 - BACOVA_00206 0.63 -0.9
22,791 - BACOVA_00206 0.63 -0.8
22,831 + BACOVA_00206 0.66 +0.7
22,948 - BACOVA_00206 0.73 +2.6
22,948 - BACOVA_00206 0.73 -1.2
22,950 - BACOVA_00206 0.73 -0.2
22,981 - BACOVA_00206 0.75 +0.6
22,981 - BACOVA_00206 0.75 -0.4
23,004 - BACOVA_00206 0.77 +2.9
23,043 + BACOVA_00206 0.79 +1.6
23,138 - BACOVA_00206 0.85 -2.3
23,141 + BACOVA_00206 0.85 -0.8
23,218 + -0.2
23,327 - -1.4
23,357 - +2.6
23,464 + +0.9
23,465 - -1.8
23,465 - -1.3
23,468 + +0.6
23,468 + +0.2
23,469 - +2.3
23,538 - BACOVA_00207 0.12 -3.0
23,538 - BACOVA_00207 0.12 +0.9
23,553 + BACOVA_00207 0.15 +0.2
23,553 + BACOVA_00207 0.15 -0.4
23,553 + BACOVA_00207 0.15 +3.3
23,554 - BACOVA_00207 0.15 +1.3
23,555 + BACOVA_00207 0.15 +3.1
23,556 - BACOVA_00207 0.15 -0.8
23,561 - BACOVA_00207 0.16 -0.8
23,621 + BACOVA_00207 0.25 -2.1
23,622 - BACOVA_00207 0.25 +0.9
23,622 - BACOVA_00207 0.25 +1.6
23,664 + BACOVA_00207 0.31 -0.3
23,684 - BACOVA_00207 0.34 +0.5
23,708 + BACOVA_00207 0.38 +0.9
23,717 + BACOVA_00207 0.39 -0.3
23,720 - BACOVA_00207 0.40 -1.4
23,724 + BACOVA_00207 0.40 -2.0
23,724 + BACOVA_00207 0.40 +1.1
23,775 + BACOVA_00207 0.48 +0.3
23,776 - BACOVA_00207 0.48 -1.3
23,923 + BACOVA_00207 0.71 +0.6
24,000 - BACOVA_00207 0.82 +1.2
24,015 + BACOVA_00207 0.85 +1.8
24,101 + +0.2
24,102 - +3.2
24,220 + -1.7

Or see this region's nucleotide sequence