Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04918

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04916 and BACOVA_04917 are separated by 60 nucleotidesBACOVA_04917 and BACOVA_04918 are separated by 278 nucleotidesBACOVA_04918 and BACOVA_04919 are separated by 12 nucleotides BACOVA_04916: BACOVA_04916 - hypothetical protein, at 323,924 to 325,465 _04916 BACOVA_04917: BACOVA_04917 - hypothetical protein, at 325,526 to 325,645 _04917 BACOVA_04918: BACOVA_04918 - hypothetical protein, at 325,924 to 326,745 _04918 BACOVA_04919: BACOVA_04919 - hypothetical protein, at 326,758 to 328,563 _04919 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.925 kb on + strand, within BACOVA_04916at 324.931 kb on - strand, within BACOVA_04916at 324.931 kb on - strand, within BACOVA_04916at 324.937 kb on + strand, within BACOVA_04916at 324.978 kb on - strand, within BACOVA_04916at 325.071 kb on + strand, within BACOVA_04916at 325.078 kb on + strand, within BACOVA_04916at 325.083 kb on - strand, within BACOVA_04916at 325.083 kb on - strand, within BACOVA_04916at 325.083 kb on - strand, within BACOVA_04916at 325.101 kb on - strand, within BACOVA_04916at 325.119 kb on - strand, within BACOVA_04916at 325.159 kb on + strand, within BACOVA_04916at 325.160 kb on - strand, within BACOVA_04916at 325.160 kb on - strand, within BACOVA_04916at 325.160 kb on - strand, within BACOVA_04916at 325.272 kb on + strand, within BACOVA_04916at 325.315 kb on - strandat 325.400 kb on + strandat 325.402 kb on + strandat 325.403 kb on - strandat 325.418 kb on + strandat 325.418 kb on + strandat 325.441 kb on + strandat 325.441 kb on + strandat 325.441 kb on + strandat 325.442 kb on - strandat 325.442 kb on - strandat 325.443 kb on + strandat 325.507 kb on + strandat 325.508 kb on - strandat 325.526 kb on - strandat 325.624 kb on + strand, within BACOVA_04917at 325.703 kb on - strandat 325.750 kb on + strandat 325.750 kb on + strandat 325.753 kb on - strandat 325.753 kb on - strandat 325.755 kb on + strandat 325.821 kb on - strandat 325.830 kb on - strandat 325.830 kb on - strandat 325.832 kb on - strandat 325.843 kb on - strandat 325.847 kb on - strandat 325.847 kb on - strandat 325.848 kb on + strandat 325.853 kb on + strandat 325.860 kb on + strandat 326.051 kb on - strand, within BACOVA_04918at 326.056 kb on + strand, within BACOVA_04918at 326.057 kb on - strand, within BACOVA_04918at 326.075 kb on + strand, within BACOVA_04918at 326.075 kb on + strand, within BACOVA_04918at 326.078 kb on - strand, within BACOVA_04918at 326.096 kb on + strand, within BACOVA_04918at 326.101 kb on - strand, within BACOVA_04918at 326.205 kb on - strand, within BACOVA_04918at 326.239 kb on + strand, within BACOVA_04918at 326.263 kb on - strand, within BACOVA_04918at 326.272 kb on - strand, within BACOVA_04918at 326.361 kb on + strand, within BACOVA_04918at 326.395 kb on - strand, within BACOVA_04918at 326.414 kb on - strand, within BACOVA_04918at 326.414 kb on - strand, within BACOVA_04918at 326.415 kb on + strand, within BACOVA_04918at 326.421 kb on - strand, within BACOVA_04918at 326.436 kb on + strand, within BACOVA_04918at 326.532 kb on + strand, within BACOVA_04918at 326.533 kb on - strand, within BACOVA_04918at 326.535 kb on - strand, within BACOVA_04918at 326.536 kb on + strand, within BACOVA_04918at 326.543 kb on + strand, within BACOVA_04918at 326.544 kb on - strand, within BACOVA_04918at 326.599 kb on - strand, within BACOVA_04918at 326.601 kb on - strand, within BACOVA_04918at 326.630 kb on + strand, within BACOVA_04918at 326.631 kb on - strand, within BACOVA_04918at 326.657 kb on - strand, within BACOVA_04918at 326.682 kb on - strandat 326.695 kb on + strandat 326.695 kb on + strandat 326.695 kb on + strandat 326.696 kb on - strandat 326.698 kb on - strandat 326.698 kb on - strandat 326.727 kb on - strandat 326.727 kb on - strandat 326.756 kb on - strandat 326.756 kb on - strandat 326.756 kb on - strandat 326.807 kb on + strandat 326.807 kb on + strandat 326.907 kb on + strandat 326.922 kb on + strandat 326.922 kb on + strandat 326.923 kb on - strandat 326.923 kb on - strandat 326.923 kb on - strandat 326.926 kb on + strandat 326.944 kb on + strand, within BACOVA_04919at 326.945 kb on - strand, within BACOVA_04919at 326.945 kb on - strand, within BACOVA_04919at 326.945 kb on - strand, within BACOVA_04919at 326.949 kb on - strand, within BACOVA_04919at 326.996 kb on - strand, within BACOVA_04919at 326.997 kb on + strand, within BACOVA_04919at 326.998 kb on - strand, within BACOVA_04919at 326.998 kb on - strand, within BACOVA_04919at 327.003 kb on + strand, within BACOVA_04919at 327.003 kb on + strand, within BACOVA_04919at 327.003 kb on + strand, within BACOVA_04919at 327.063 kb on - strand, within BACOVA_04919at 327.063 kb on - strand, within BACOVA_04919at 327.115 kb on + strand, within BACOVA_04919at 327.117 kb on + strand, within BACOVA_04919at 327.118 kb on - strand, within BACOVA_04919at 327.150 kb on + strand, within BACOVA_04919at 327.151 kb on - strand, within BACOVA_04919at 327.151 kb on - strand, within BACOVA_04919at 327.155 kb on - strand, within BACOVA_04919at 327.195 kb on + strand, within BACOVA_04919at 327.211 kb on + strand, within BACOVA_04919at 327.253 kb on + strand, within BACOVA_04919at 327.255 kb on + strand, within BACOVA_04919at 327.256 kb on - strand, within BACOVA_04919at 327.351 kb on - strand, within BACOVA_04919at 327.383 kb on + strand, within BACOVA_04919at 327.384 kb on - strand, within BACOVA_04919at 327.414 kb on + strand, within BACOVA_04919at 327.415 kb on - strand, within BACOVA_04919at 327.418 kb on - strand, within BACOVA_04919at 327.432 kb on + strand, within BACOVA_04919at 327.504 kb on - strand, within BACOVA_04919at 327.534 kb on - strand, within BACOVA_04919at 327.534 kb on - strand, within BACOVA_04919at 327.534 kb on - strand, within BACOVA_04919at 327.610 kb on + strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.615 kb on - strand, within BACOVA_04919at 327.646 kb on - strand, within BACOVA_04919at 327.705 kb on + strand, within BACOVA_04919at 327.706 kb on - strand, within BACOVA_04919at 327.716 kb on + strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.717 kb on - strand, within BACOVA_04919at 327.720 kb on + strand, within BACOVA_04919

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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324,925 + BACOVA_04916 0.65 +0.5
324,931 - BACOVA_04916 0.65 +0.3
324,931 - BACOVA_04916 0.65 +0.0
324,937 + BACOVA_04916 0.66 +0.2
324,978 - BACOVA_04916 0.68 +2.0
325,071 + BACOVA_04916 0.74 +0.6
325,078 + BACOVA_04916 0.75 -1.6
325,083 - BACOVA_04916 0.75 -0.6
325,083 - BACOVA_04916 0.75 -1.1
325,083 - BACOVA_04916 0.75 -0.5
325,101 - BACOVA_04916 0.76 +0.6
325,119 - BACOVA_04916 0.77 -0.3
325,159 + BACOVA_04916 0.80 +1.0
325,160 - BACOVA_04916 0.80 +1.5
325,160 - BACOVA_04916 0.80 +0.2
325,160 - BACOVA_04916 0.80 -0.9
325,272 + BACOVA_04916 0.87 +1.0
325,315 - -1.7
325,400 + +0.8
325,402 + +0.3
325,403 - -1.1
325,418 + -1.3
325,418 + -0.9
325,441 + -0.2
325,441 + -2.5
325,441 + +3.3
325,442 - -1.5
325,442 - +0.9
325,443 + -2.1
325,507 + +1.3
325,508 - -1.4
325,526 - -0.1
325,624 + BACOVA_04917 0.82 -1.0
325,703 - -0.3
325,750 + -1.2
325,750 + +1.6
325,753 - -0.7
325,753 - +1.3
325,755 + -1.5
325,821 - -1.0
325,830 - +0.4
325,830 - -2.0
325,832 - -0.5
325,843 - -1.2
325,847 - -0.5
325,847 - -0.3
325,848 + +0.1
325,853 + +0.9
325,860 + -1.3
326,051 - BACOVA_04918 0.15 +2.3
326,056 + BACOVA_04918 0.16 -0.0
326,057 - BACOVA_04918 0.16 +1.0
326,075 + BACOVA_04918 0.18 +0.1
326,075 + BACOVA_04918 0.18 -0.7
326,078 - BACOVA_04918 0.19 +1.0
326,096 + BACOVA_04918 0.21 +2.3
326,101 - BACOVA_04918 0.22 -0.0
326,205 - BACOVA_04918 0.34 +0.1
326,239 + BACOVA_04918 0.38 -3.5
326,263 - BACOVA_04918 0.41 +0.2
326,272 - BACOVA_04918 0.42 -0.4
326,361 + BACOVA_04918 0.53 +1.6
326,395 - BACOVA_04918 0.57 +0.1
326,414 - BACOVA_04918 0.60 -0.5
326,414 - BACOVA_04918 0.60 -1.5
326,415 + BACOVA_04918 0.60 -0.1
326,421 - BACOVA_04918 0.60 +0.5
326,436 + BACOVA_04918 0.62 -1.0
326,532 + BACOVA_04918 0.74 -0.7
326,533 - BACOVA_04918 0.74 +0.6
326,535 - BACOVA_04918 0.74 +1.3
326,536 + BACOVA_04918 0.74 -0.7
326,543 + BACOVA_04918 0.75 -1.0
326,544 - BACOVA_04918 0.75 +0.8
326,599 - BACOVA_04918 0.82 +1.1
326,601 - BACOVA_04918 0.82 -1.2
326,630 + BACOVA_04918 0.86 -1.0
326,631 - BACOVA_04918 0.86 -0.6
326,657 - BACOVA_04918 0.89 -0.6
326,682 - +2.0
326,695 + +0.9
326,695 + -0.4
326,695 + -2.7
326,696 - +0.3
326,698 - -0.5
326,698 - -2.4
326,727 - +0.9
326,727 - +0.2
326,756 - +0.2
326,756 - -0.5
326,756 - +0.3
326,807 + +1.0
326,807 + +0.3
326,907 + +0.9
326,922 + -0.2
326,922 + +1.1
326,923 - -0.1
326,923 - +0.3
326,923 - -2.0
326,926 + +1.5
326,944 + BACOVA_04919 0.10 +0.6
326,945 - BACOVA_04919 0.10 +0.4
326,945 - BACOVA_04919 0.10 +0.1
326,945 - BACOVA_04919 0.10 +1.1
326,949 - BACOVA_04919 0.11 -0.7
326,996 - BACOVA_04919 0.13 +0.1
326,997 + BACOVA_04919 0.13 +1.7
326,998 - BACOVA_04919 0.13 -0.1
326,998 - BACOVA_04919 0.13 -0.9
327,003 + BACOVA_04919 0.14 +0.5
327,003 + BACOVA_04919 0.14 -0.8
327,003 + BACOVA_04919 0.14 -0.6
327,063 - BACOVA_04919 0.17 +1.3
327,063 - BACOVA_04919 0.17 +0.1
327,115 + BACOVA_04919 0.20 -1.3
327,117 + BACOVA_04919 0.20 +0.2
327,118 - BACOVA_04919 0.20 -0.5
327,150 + BACOVA_04919 0.22 -1.0
327,151 - BACOVA_04919 0.22 +0.5
327,151 - BACOVA_04919 0.22 -0.4
327,155 - BACOVA_04919 0.22 -0.7
327,195 + BACOVA_04919 0.24 +0.4
327,211 + BACOVA_04919 0.25 -0.7
327,253 + BACOVA_04919 0.27 -0.0
327,255 + BACOVA_04919 0.28 +2.0
327,256 - BACOVA_04919 0.28 +0.0
327,351 - BACOVA_04919 0.33 -0.3
327,383 + BACOVA_04919 0.35 +1.1
327,384 - BACOVA_04919 0.35 +1.1
327,414 + BACOVA_04919 0.36 -0.3
327,415 - BACOVA_04919 0.36 -0.7
327,418 - BACOVA_04919 0.37 +2.6
327,432 + BACOVA_04919 0.37 -0.2
327,504 - BACOVA_04919 0.41 -1.1
327,534 - BACOVA_04919 0.43 +1.6
327,534 - BACOVA_04919 0.43 -0.7
327,534 - BACOVA_04919 0.43 -0.4
327,610 + BACOVA_04919 0.47 +0.3
327,615 - BACOVA_04919 0.47 -0.7
327,615 - BACOVA_04919 0.47 +0.9
327,615 - BACOVA_04919 0.47 -0.7
327,646 - BACOVA_04919 0.49 -0.0
327,705 + BACOVA_04919 0.52 +1.6
327,706 - BACOVA_04919 0.52 +0.6
327,716 + BACOVA_04919 0.53 -0.4
327,717 - BACOVA_04919 0.53 -0.3
327,717 - BACOVA_04919 0.53 -0.0
327,717 - BACOVA_04919 0.53 -0.4
327,717 - BACOVA_04919 0.53 -0.6
327,720 + BACOVA_04919 0.53 -2.0

Or see this region's nucleotide sequence