Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03855

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03854 and BACOVA_03855 are separated by 242 nucleotidesBACOVA_03855 and BACOVA_03856 are separated by 56 nucleotides BACOVA_03854: BACOVA_03854 - L-fucose:H+ symporter permease, at 204,388 to 205,698 _03854 BACOVA_03855: BACOVA_03855 - RNA polymerase sigma-70 factor, at 205,941 to 206,492 _03855 BACOVA_03856: BACOVA_03856 - sigma factor regulatory protein, FecR/PupR family, at 206,549 to 207,535 _03856 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.998 kb on - strand, within BACOVA_03854at 204.998 kb on - strand, within BACOVA_03854at 204.998 kb on - strand, within BACOVA_03854at 205.022 kb on + strand, within BACOVA_03854at 205.080 kb on + strand, within BACOVA_03854at 205.080 kb on + strand, within BACOVA_03854at 205.081 kb on - strand, within BACOVA_03854at 205.086 kb on - strand, within BACOVA_03854at 205.142 kb on + strand, within BACOVA_03854at 205.160 kb on - strand, within BACOVA_03854at 205.163 kb on + strand, within BACOVA_03854at 205.163 kb on + strand, within BACOVA_03854at 205.176 kb on + strand, within BACOVA_03854at 205.177 kb on - strand, within BACOVA_03854at 205.231 kb on - strand, within BACOVA_03854at 205.257 kb on - strand, within BACOVA_03854at 205.257 kb on - strand, within BACOVA_03854at 205.269 kb on + strand, within BACOVA_03854at 205.269 kb on + strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.272 kb on + strand, within BACOVA_03854at 205.273 kb on - strand, within BACOVA_03854at 205.277 kb on + strand, within BACOVA_03854at 205.296 kb on + strand, within BACOVA_03854at 205.297 kb on - strand, within BACOVA_03854at 205.315 kb on - strand, within BACOVA_03854at 205.331 kb on - strand, within BACOVA_03854at 205.331 kb on - strand, within BACOVA_03854at 205.365 kb on + strand, within BACOVA_03854at 205.365 kb on + strand, within BACOVA_03854at 205.389 kb on - strand, within BACOVA_03854at 205.433 kb on + strand, within BACOVA_03854at 205.449 kb on + strand, within BACOVA_03854at 205.449 kb on + strand, within BACOVA_03854at 205.450 kb on - strand, within BACOVA_03854at 205.479 kb on + strand, within BACOVA_03854at 205.530 kb on + strand, within BACOVA_03854at 205.530 kb on + strand, within BACOVA_03854at 205.531 kb on - strand, within BACOVA_03854at 205.534 kb on - strand, within BACOVA_03854at 205.534 kb on - strand, within BACOVA_03854at 205.569 kb on - strandat 205.598 kb on + strandat 205.701 kb on + strandat 205.701 kb on + strandat 205.702 kb on - strandat 205.710 kb on - strandat 205.735 kb on + strandat 205.736 kb on - strandat 205.736 kb on - strandat 205.811 kb on + strandat 205.811 kb on + strandat 205.812 kb on - strandat 205.884 kb on + strandat 205.885 kb on - strandat 205.887 kb on + strandat 205.940 kb on + strandat 205.941 kb on - strandat 205.941 kb on - strandat 205.969 kb on + strandat 205.969 kb on + strandat 205.988 kb on + strandat 206.064 kb on - strand, within BACOVA_03855at 206.064 kb on - strand, within BACOVA_03855at 206.136 kb on + strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.138 kb on + strand, within BACOVA_03855at 206.139 kb on - strand, within BACOVA_03855at 206.142 kb on + strand, within BACOVA_03855at 206.142 kb on + strand, within BACOVA_03855at 206.143 kb on - strand, within BACOVA_03855at 206.143 kb on - strand, within BACOVA_03855at 206.259 kb on - strand, within BACOVA_03855at 206.270 kb on + strand, within BACOVA_03855at 206.271 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.280 kb on - strand, within BACOVA_03855at 206.290 kb on + strand, within BACOVA_03855at 206.291 kb on - strand, within BACOVA_03855at 206.291 kb on - strand, within BACOVA_03855at 206.366 kb on + strand, within BACOVA_03855at 206.367 kb on - strand, within BACOVA_03855at 206.372 kb on + strand, within BACOVA_03855at 206.375 kb on + strand, within BACOVA_03855at 206.384 kb on - strand, within BACOVA_03855at 206.430 kb on + strand, within BACOVA_03855at 206.450 kb on - strandat 206.517 kb on + strandat 206.518 kb on - strandat 206.518 kb on - strandat 206.518 kb on - strandat 206.577 kb on + strandat 206.593 kb on + strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.637 kb on + strandat 206.638 kb on - strandat 206.638 kb on - strandat 206.638 kb on - strandat 206.733 kb on - strand, within BACOVA_03856at 206.759 kb on - strand, within BACOVA_03856at 206.762 kb on - strand, within BACOVA_03856at 206.800 kb on + strand, within BACOVA_03856at 206.800 kb on + strand, within BACOVA_03856at 206.801 kb on - strand, within BACOVA_03856at 206.802 kb on + strand, within BACOVA_03856at 206.827 kb on - strand, within BACOVA_03856at 206.827 kb on - strand, within BACOVA_03856at 206.853 kb on - strand, within BACOVA_03856at 206.853 kb on - strand, within BACOVA_03856at 206.856 kb on + strand, within BACOVA_03856at 206.856 kb on + strand, within BACOVA_03856at 206.892 kb on + strand, within BACOVA_03856at 206.900 kb on + strand, within BACOVA_03856at 206.900 kb on + strand, within BACOVA_03856at 206.901 kb on - strand, within BACOVA_03856at 206.901 kb on - strand, within BACOVA_03856at 206.901 kb on - strand, within BACOVA_03856at 206.901 kb on - strand, within BACOVA_03856at 206.902 kb on + strand, within BACOVA_03856at 206.902 kb on + strand, within BACOVA_03856at 206.979 kb on + strand, within BACOVA_03856at 206.979 kb on + strand, within BACOVA_03856at 206.995 kb on + strand, within BACOVA_03856at 207.012 kb on - strand, within BACOVA_03856at 207.016 kb on - strand, within BACOVA_03856at 207.071 kb on - strand, within BACOVA_03856at 207.098 kb on - strand, within BACOVA_03856at 207.124 kb on - strand, within BACOVA_03856at 207.190 kb on + strand, within BACOVA_03856at 207.191 kb on - strand, within BACOVA_03856at 207.240 kb on - strand, within BACOVA_03856at 207.260 kb on + strand, within BACOVA_03856at 207.355 kb on - strand, within BACOVA_03856at 207.374 kb on + strand, within BACOVA_03856at 207.384 kb on + strand, within BACOVA_03856at 207.384 kb on + strand, within BACOVA_03856at 207.384 kb on + strand, within BACOVA_03856at 207.385 kb on - strand, within BACOVA_03856at 207.385 kb on - strand, within BACOVA_03856at 207.386 kb on + strand, within BACOVA_03856at 207.387 kb on - strand, within BACOVA_03856at 207.387 kb on - strand, within BACOVA_03856at 207.388 kb on + strand, within BACOVA_03856at 207.388 kb on - strand, within BACOVA_03856at 207.391 kb on + strand, within BACOVA_03856at 207.391 kb on + strand, within BACOVA_03856

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
remove
204,998 - BACOVA_03854 0.47 -0.2
204,998 - BACOVA_03854 0.47 -0.4
204,998 - BACOVA_03854 0.47 +1.2
205,022 + BACOVA_03854 0.48 -1.2
205,080 + BACOVA_03854 0.53 -1.1
205,080 + BACOVA_03854 0.53 -0.5
205,081 - BACOVA_03854 0.53 -0.1
205,086 - BACOVA_03854 0.53 -0.3
205,142 + BACOVA_03854 0.58 +0.4
205,160 - BACOVA_03854 0.59 +0.8
205,163 + BACOVA_03854 0.59 +1.7
205,163 + BACOVA_03854 0.59 -0.6
205,176 + BACOVA_03854 0.60 +1.0
205,177 - BACOVA_03854 0.60 +2.3
205,231 - BACOVA_03854 0.64 -1.1
205,257 - BACOVA_03854 0.66 +0.5
205,257 - BACOVA_03854 0.66 -0.6
205,269 + BACOVA_03854 0.67 -0.2
205,269 + BACOVA_03854 0.67 +0.2
205,270 - BACOVA_03854 0.67 -0.9
205,270 - BACOVA_03854 0.67 +2.0
205,270 - BACOVA_03854 0.67 -0.5
205,272 + BACOVA_03854 0.67 +1.1
205,273 - BACOVA_03854 0.68 +0.9
205,277 + BACOVA_03854 0.68 -1.7
205,296 + BACOVA_03854 0.69 +0.4
205,297 - BACOVA_03854 0.69 +1.6
205,315 - BACOVA_03854 0.71 +2.4
205,331 - BACOVA_03854 0.72 -2.6
205,331 - BACOVA_03854 0.72 +0.1
205,365 + BACOVA_03854 0.75 +2.0
205,365 + BACOVA_03854 0.75 -0.5
205,389 - BACOVA_03854 0.76 -0.1
205,433 + BACOVA_03854 0.80 +0.6
205,449 + BACOVA_03854 0.81 +1.8
205,449 + BACOVA_03854 0.81 +1.5
205,450 - BACOVA_03854 0.81 -0.2
205,479 + BACOVA_03854 0.83 -0.2
205,530 + BACOVA_03854 0.87 -0.9
205,530 + BACOVA_03854 0.87 -1.9
205,531 - BACOVA_03854 0.87 -0.7
205,534 - BACOVA_03854 0.87 -1.4
205,534 - BACOVA_03854 0.87 +0.1
205,569 - +0.4
205,598 + -0.5
205,701 + +0.4
205,701 + -0.6
205,702 - +0.2
205,710 - -0.8
205,735 + -0.8
205,736 - +0.1
205,736 - +0.4
205,811 + -0.2
205,811 + +1.6
205,812 - -0.2
205,884 + +0.8
205,885 - +0.4
205,887 + +0.2
205,940 + +2.0
205,941 - -0.3
205,941 - +1.4
205,969 + +1.1
205,969 + -1.4
205,988 + -0.2
206,064 - BACOVA_03855 0.22 +1.0
206,064 - BACOVA_03855 0.22 -0.2
206,136 + BACOVA_03855 0.35 -2.1
206,137 - BACOVA_03855 0.36 +1.4
206,137 - BACOVA_03855 0.36 -1.0
206,137 - BACOVA_03855 0.36 -1.1
206,138 + BACOVA_03855 0.36 -0.2
206,139 - BACOVA_03855 0.36 -1.3
206,142 + BACOVA_03855 0.36 -0.2
206,142 + BACOVA_03855 0.36 +0.3
206,143 - BACOVA_03855 0.37 +1.9
206,143 - BACOVA_03855 0.37 -0.2
206,259 - BACOVA_03855 0.58 -1.0
206,270 + BACOVA_03855 0.60 +1.4
206,271 - BACOVA_03855 0.60 +0.1
206,275 - BACOVA_03855 0.61 -0.9
206,275 - BACOVA_03855 0.61 +1.4
206,275 - BACOVA_03855 0.61 -0.2
206,275 - BACOVA_03855 0.61 +0.1
206,280 - BACOVA_03855 0.61 -0.6
206,290 + BACOVA_03855 0.63 +1.9
206,291 - BACOVA_03855 0.63 -1.6
206,291 - BACOVA_03855 0.63 -1.0
206,366 + BACOVA_03855 0.77 +0.5
206,367 - BACOVA_03855 0.77 -0.2
206,372 + BACOVA_03855 0.78 +0.5
206,375 + BACOVA_03855 0.79 +1.4
206,384 - BACOVA_03855 0.80 +0.7
206,430 + BACOVA_03855 0.89 +0.2
206,450 - +0.3
206,517 + -0.0
206,518 - -1.8
206,518 - +0.9
206,518 - -0.5
206,577 + +1.8
206,593 + -0.5
206,594 - -0.2
206,594 - -0.2
206,594 - -0.5
206,594 - +0.2
206,637 + +1.0
206,638 - -1.2
206,638 - -0.1
206,638 - +0.8
206,733 - BACOVA_03856 0.19 +1.4
206,759 - BACOVA_03856 0.21 -0.2
206,762 - BACOVA_03856 0.22 -0.6
206,800 + BACOVA_03856 0.25 -0.2
206,800 + BACOVA_03856 0.25 -0.7
206,801 - BACOVA_03856 0.26 +1.4
206,802 + BACOVA_03856 0.26 -0.1
206,827 - BACOVA_03856 0.28 -0.9
206,827 - BACOVA_03856 0.28 -0.1
206,853 - BACOVA_03856 0.31 +0.0
206,853 - BACOVA_03856 0.31 -0.9
206,856 + BACOVA_03856 0.31 -0.4
206,856 + BACOVA_03856 0.31 -1.7
206,892 + BACOVA_03856 0.35 -1.3
206,900 + BACOVA_03856 0.36 -0.5
206,900 + BACOVA_03856 0.36 -0.2
206,901 - BACOVA_03856 0.36 +0.4
206,901 - BACOVA_03856 0.36 +2.4
206,901 - BACOVA_03856 0.36 -0.6
206,901 - BACOVA_03856 0.36 +1.7
206,902 + BACOVA_03856 0.36 +0.4
206,902 + BACOVA_03856 0.36 -1.0
206,979 + BACOVA_03856 0.44 +0.4
206,979 + BACOVA_03856 0.44 +0.7
206,995 + BACOVA_03856 0.45 +1.5
207,012 - BACOVA_03856 0.47 +0.4
207,016 - BACOVA_03856 0.47 -0.2
207,071 - BACOVA_03856 0.53 -0.5
207,098 - BACOVA_03856 0.56 -0.9
207,124 - BACOVA_03856 0.58 +1.4
207,190 + BACOVA_03856 0.65 -1.8
207,191 - BACOVA_03856 0.65 +0.4
207,240 - BACOVA_03856 0.70 -0.2
207,260 + BACOVA_03856 0.72 -0.9
207,355 - BACOVA_03856 0.82 -0.2
207,374 + BACOVA_03856 0.84 +0.8
207,384 + BACOVA_03856 0.85 -0.6
207,384 + BACOVA_03856 0.85 +0.3
207,384 + BACOVA_03856 0.85 -0.5
207,385 - BACOVA_03856 0.85 -0.3
207,385 - BACOVA_03856 0.85 -1.2
207,386 + BACOVA_03856 0.85 +0.1
207,387 - BACOVA_03856 0.85 +1.2
207,387 - BACOVA_03856 0.85 -0.2
207,388 + BACOVA_03856 0.85 -1.1
207,388 - BACOVA_03856 0.85 -2.8
207,391 + BACOVA_03856 0.85 -1.0
207,391 + BACOVA_03856 0.85 +0.4

Or see this region's nucleotide sequence