Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03495

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03494 and BACOVA_03495 are separated by 91 nucleotidesBACOVA_03495 and BACOVA_03496 are separated by 13 nucleotidesBACOVA_03496 and BACOVA_03497 are separated by 56 nucleotides BACOVA_03494: BACOVA_03494 - glycosyl hydrolase, family 88, at 251,880 to 253,052 _03494 BACOVA_03495: BACOVA_03495 - acetyltransferase, GNAT family, at 253,144 to 254,160 _03495 BACOVA_03496: BACOVA_03496 - hypothetical protein, at 254,174 to 255,091 _03496 BACOVA_03497: BACOVA_03497 - putative TIGR00659 family protein, at 255,148 to 255,843 _03497 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 252.179 kb on + strand, within BACOVA_03494at 252.179 kb on + strand, within BACOVA_03494at 252.179 kb on + strand, within BACOVA_03494at 252.180 kb on - strand, within BACOVA_03494at 252.180 kb on - strand, within BACOVA_03494at 252.225 kb on + strand, within BACOVA_03494at 252.231 kb on + strand, within BACOVA_03494at 252.232 kb on - strand, within BACOVA_03494at 252.249 kb on + strand, within BACOVA_03494at 252.250 kb on - strand, within BACOVA_03494at 252.250 kb on - strand, within BACOVA_03494at 252.288 kb on + strand, within BACOVA_03494at 252.288 kb on + strand, within BACOVA_03494at 252.301 kb on - strand, within BACOVA_03494at 252.302 kb on + strand, within BACOVA_03494at 252.355 kb on - strand, within BACOVA_03494at 252.403 kb on + strand, within BACOVA_03494at 252.403 kb on + strand, within BACOVA_03494at 252.404 kb on - strand, within BACOVA_03494at 252.406 kb on - strand, within BACOVA_03494at 252.406 kb on - strand, within BACOVA_03494at 252.407 kb on + strand, within BACOVA_03494at 252.407 kb on + strand, within BACOVA_03494at 252.435 kb on + strand, within BACOVA_03494at 252.436 kb on - strand, within BACOVA_03494at 252.438 kb on - strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.489 kb on + strand, within BACOVA_03494at 252.500 kb on + strand, within BACOVA_03494at 252.500 kb on + strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.507 kb on + strand, within BACOVA_03494at 252.507 kb on + strand, within BACOVA_03494at 252.552 kb on + strand, within BACOVA_03494at 252.552 kb on + strand, within BACOVA_03494at 252.553 kb on - strand, within BACOVA_03494at 252.553 kb on - strand, within BACOVA_03494at 252.659 kb on + strand, within BACOVA_03494at 252.659 kb on + strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.677 kb on + strand, within BACOVA_03494at 252.680 kb on - strand, within BACOVA_03494at 252.680 kb on - strand, within BACOVA_03494at 252.735 kb on + strand, within BACOVA_03494at 252.736 kb on - strand, within BACOVA_03494at 252.749 kb on + strand, within BACOVA_03494at 252.749 kb on + strand, within BACOVA_03494at 252.750 kb on - strand, within BACOVA_03494at 252.803 kb on + strand, within BACOVA_03494at 252.804 kb on - strand, within BACOVA_03494at 252.830 kb on + strand, within BACOVA_03494at 252.831 kb on - strand, within BACOVA_03494at 252.885 kb on + strand, within BACOVA_03494at 252.886 kb on - strand, within BACOVA_03494at 252.927 kb on + strand, within BACOVA_03494at 253.038 kb on + strandat 253.051 kb on - strandat 253.106 kb on - strandat 253.106 kb on - strandat 253.119 kb on - strandat 253.165 kb on - strandat 253.167 kb on - strandat 253.186 kb on + strandat 253.210 kb on - strandat 253.222 kb on - strandat 253.255 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.393 kb on - strand, within BACOVA_03495at 253.397 kb on - strand, within BACOVA_03495at 253.432 kb on + strand, within BACOVA_03495at 253.432 kb on + strand, within BACOVA_03495at 253.433 kb on - strand, within BACOVA_03495at 253.487 kb on + strand, within BACOVA_03495at 253.531 kb on - strand, within BACOVA_03495at 253.545 kb on + strand, within BACOVA_03495at 253.545 kb on + strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.549 kb on + strand, within BACOVA_03495at 253.550 kb on - strand, within BACOVA_03495at 253.598 kb on + strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.630 kb on - strand, within BACOVA_03495at 253.660 kb on - strand, within BACOVA_03495at 253.660 kb on - strand, within BACOVA_03495at 253.687 kb on - strand, within BACOVA_03495at 253.701 kb on - strand, within BACOVA_03495at 253.806 kb on - strand, within BACOVA_03495at 253.820 kb on + strand, within BACOVA_03495at 253.867 kb on + strand, within BACOVA_03495at 253.948 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.965 kb on - strand, within BACOVA_03495at 253.975 kb on + strand, within BACOVA_03495at 254.029 kb on + strand, within BACOVA_03495at 254.071 kb on - strandat 254.072 kb on + strandat 254.072 kb on + strandat 254.072 kb on + strandat 254.072 kb on + strandat 254.073 kb on - strandat 254.087 kb on + strandat 254.140 kb on + strandat 254.140 kb on + strandat 254.141 kb on - strandat 254.161 kb on - strandat 254.167 kb on - strandat 254.176 kb on - strandat 254.182 kb on + strandat 254.220 kb on + strandat 254.221 kb on - strandat 254.304 kb on + strand, within BACOVA_03496at 254.305 kb on - strand, within BACOVA_03496at 254.305 kb on - strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.308 kb on + strand, within BACOVA_03496at 254.309 kb on - strand, within BACOVA_03496at 254.310 kb on + strand, within BACOVA_03496at 254.340 kb on + strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.345 kb on - strand, within BACOVA_03496at 254.350 kb on + strand, within BACOVA_03496at 254.355 kb on + strand, within BACOVA_03496at 254.356 kb on - strand, within BACOVA_03496at 254.387 kb on + strand, within BACOVA_03496at 254.431 kb on + strand, within BACOVA_03496at 254.432 kb on - strand, within BACOVA_03496at 254.447 kb on - strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.563 kb on + strand, within BACOVA_03496at 254.620 kb on + strand, within BACOVA_03496at 254.621 kb on - strand, within BACOVA_03496at 254.622 kb on + strand, within BACOVA_03496at 254.623 kb on - strand, within BACOVA_03496at 254.623 kb on - strand, within BACOVA_03496at 254.638 kb on - strand, within BACOVA_03496at 254.659 kb on + strand, within BACOVA_03496at 254.718 kb on + strand, within BACOVA_03496at 254.722 kb on + strand, within BACOVA_03496at 254.724 kb on + strand, within BACOVA_03496at 254.733 kb on + strand, within BACOVA_03496at 254.749 kb on + strand, within BACOVA_03496at 254.794 kb on + strand, within BACOVA_03496at 254.798 kb on - strand, within BACOVA_03496at 254.816 kb on - strand, within BACOVA_03496at 254.864 kb on + strand, within BACOVA_03496at 254.899 kb on + strand, within BACOVA_03496at 254.899 kb on + strand, within BACOVA_03496at 254.900 kb on - strand, within BACOVA_03496at 254.900 kb on - strand, within BACOVA_03496at 254.901 kb on + strand, within BACOVA_03496at 254.902 kb on - strand, within BACOVA_03496at 254.902 kb on - strand, within BACOVA_03496at 254.970 kb on + strand, within BACOVA_03496at 254.970 kb on + strand, within BACOVA_03496at 254.971 kb on - strand, within BACOVA_03496at 254.971 kb on - strand, within BACOVA_03496at 254.972 kb on + strand, within BACOVA_03496at 254.986 kb on + strand, within BACOVA_03496at 255.079 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.120 kb on + strandat 255.121 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
remove
252,179 + BACOVA_03494 0.25 +1.0
252,179 + BACOVA_03494 0.25 -1.6
252,179 + BACOVA_03494 0.25 -0.3
252,180 - BACOVA_03494 0.26 -0.5
252,180 - BACOVA_03494 0.26 +0.6
252,225 + BACOVA_03494 0.29 -0.2
252,231 + BACOVA_03494 0.30 -0.8
252,232 - BACOVA_03494 0.30 +1.3
252,249 + BACOVA_03494 0.31 -1.6
252,250 - BACOVA_03494 0.32 -0.1
252,250 - BACOVA_03494 0.32 +0.5
252,288 + BACOVA_03494 0.35 -0.6
252,288 + BACOVA_03494 0.35 +2.5
252,301 - BACOVA_03494 0.36 -0.8
252,302 + BACOVA_03494 0.36 -0.4
252,355 - BACOVA_03494 0.40 +2.1
252,403 + BACOVA_03494 0.45 -0.4
252,403 + BACOVA_03494 0.45 +0.2
252,404 - BACOVA_03494 0.45 -1.8
252,406 - BACOVA_03494 0.45 -2.7
252,406 - BACOVA_03494 0.45 +2.2
252,407 + BACOVA_03494 0.45 -0.2
252,407 + BACOVA_03494 0.45 +1.5
252,435 + BACOVA_03494 0.47 -0.8
252,436 - BACOVA_03494 0.47 -0.6
252,438 - BACOVA_03494 0.48 +0.2
252,480 + BACOVA_03494 0.51 -1.4
252,480 + BACOVA_03494 0.51 +0.7
252,480 + BACOVA_03494 0.51 -0.0
252,489 + BACOVA_03494 0.52 -0.2
252,500 + BACOVA_03494 0.53 -1.1
252,500 + BACOVA_03494 0.53 -0.4
252,501 - BACOVA_03494 0.53 +2.9
252,501 - BACOVA_03494 0.53 -0.2
252,501 - BACOVA_03494 0.53 -0.5
252,504 - BACOVA_03494 0.53 -1.0
252,504 - BACOVA_03494 0.53 -0.5
252,504 - BACOVA_03494 0.53 -1.1
252,504 - BACOVA_03494 0.53 -0.7
252,504 - BACOVA_03494 0.53 -0.5
252,507 + BACOVA_03494 0.53 -1.4
252,507 + BACOVA_03494 0.53 -0.1
252,552 + BACOVA_03494 0.57 +0.2
252,552 + BACOVA_03494 0.57 +1.0
252,553 - BACOVA_03494 0.57 -0.4
252,553 - BACOVA_03494 0.57 +0.2
252,659 + BACOVA_03494 0.66 -0.0
252,659 + BACOVA_03494 0.66 -0.1
252,660 - BACOVA_03494 0.66 -0.8
252,660 - BACOVA_03494 0.66 +0.8
252,660 - BACOVA_03494 0.66 -0.6
252,660 - BACOVA_03494 0.66 -1.2
252,677 + BACOVA_03494 0.68 -1.6
252,680 - BACOVA_03494 0.68 -0.5
252,680 - BACOVA_03494 0.68 -2.9
252,735 + BACOVA_03494 0.73 -0.2
252,736 - BACOVA_03494 0.73 -1.0
252,749 + BACOVA_03494 0.74 +0.6
252,749 + BACOVA_03494 0.74 +1.4
252,750 - BACOVA_03494 0.74 -1.4
252,803 + BACOVA_03494 0.79 -1.2
252,804 - BACOVA_03494 0.79 +2.5
252,830 + BACOVA_03494 0.81 -0.9
252,831 - BACOVA_03494 0.81 +0.8
252,885 + BACOVA_03494 0.86 -0.8
252,886 - BACOVA_03494 0.86 -0.4
252,927 + BACOVA_03494 0.89 +3.2
253,038 + +1.2
253,051 - -0.1
253,106 - -1.9
253,106 - -1.1
253,119 - -0.4
253,165 - -1.5
253,167 - -0.2
253,186 + -0.6
253,210 - +1.2
253,222 - -1.5
253,255 + BACOVA_03495 0.11 -0.3
253,383 + BACOVA_03495 0.24 -1.3
253,383 + BACOVA_03495 0.24 -1.1
253,383 + BACOVA_03495 0.24 +1.5
253,383 + BACOVA_03495 0.24 +0.3
253,393 - BACOVA_03495 0.24 -0.5
253,397 - BACOVA_03495 0.25 -1.5
253,432 + BACOVA_03495 0.28 -0.6
253,432 + BACOVA_03495 0.28 -0.5
253,433 - BACOVA_03495 0.28 -0.8
253,487 + BACOVA_03495 0.34 +0.9
253,531 - BACOVA_03495 0.38 -0.3
253,545 + BACOVA_03495 0.39 -1.2
253,545 + BACOVA_03495 0.39 +1.6
253,546 - BACOVA_03495 0.40 +0.2
253,546 - BACOVA_03495 0.40 -0.7
253,546 - BACOVA_03495 0.40 -0.7
253,547 + BACOVA_03495 0.40 +3.4
253,547 + BACOVA_03495 0.40 -1.1
253,547 + BACOVA_03495 0.40 +0.2
253,547 + BACOVA_03495 0.40 -2.9
253,549 + BACOVA_03495 0.40 -0.4
253,550 - BACOVA_03495 0.40 +1.4
253,598 + BACOVA_03495 0.45 +0.8
253,627 - BACOVA_03495 0.47 -1.1
253,627 - BACOVA_03495 0.47 -1.0
253,627 - BACOVA_03495 0.47 -1.3
253,630 - BACOVA_03495 0.48 -1.2
253,660 - BACOVA_03495 0.51 -0.8
253,660 - BACOVA_03495 0.51 +0.2
253,687 - BACOVA_03495 0.53 -0.6
253,701 - BACOVA_03495 0.55 -0.8
253,806 - BACOVA_03495 0.65 +0.4
253,820 + BACOVA_03495 0.66 -0.7
253,867 + BACOVA_03495 0.71 -1.4
253,948 - BACOVA_03495 0.79 -0.8
253,963 - BACOVA_03495 0.81 -2.1
253,963 - BACOVA_03495 0.81 +0.8
253,963 - BACOVA_03495 0.81 -1.4
253,965 - BACOVA_03495 0.81 -0.8
253,975 + BACOVA_03495 0.82 -0.4
254,029 + BACOVA_03495 0.87 -1.2
254,071 - -0.4
254,072 + -1.4
254,072 + -1.9
254,072 + -1.9
254,072 + -1.6
254,073 - +1.2
254,087 + -1.0
254,140 + +0.0
254,140 + +0.2
254,141 - -0.3
254,161 - +2.2
254,167 - -0.6
254,176 - +2.2
254,182 + +1.1
254,220 + +1.0
254,221 - +0.2
254,304 + BACOVA_03496 0.14 +0.8
254,305 - BACOVA_03496 0.14 -3.4
254,305 - BACOVA_03496 0.14 -0.8
254,308 + BACOVA_03496 0.15 -0.5
254,308 + BACOVA_03496 0.15 +0.7
254,308 + BACOVA_03496 0.15 -0.4
254,308 + BACOVA_03496 0.15 -0.0
254,309 - BACOVA_03496 0.15 -0.6
254,310 + BACOVA_03496 0.15 -0.1
254,340 + BACOVA_03496 0.18 -0.4
254,345 - BACOVA_03496 0.19 -0.6
254,345 - BACOVA_03496 0.19 -0.8
254,345 - BACOVA_03496 0.19 +0.2
254,350 + BACOVA_03496 0.19 +1.2
254,355 + BACOVA_03496 0.20 -1.6
254,356 - BACOVA_03496 0.20 +0.0
254,387 + BACOVA_03496 0.23 -0.3
254,431 + BACOVA_03496 0.28 -1.6
254,432 - BACOVA_03496 0.28 +0.3
254,447 - BACOVA_03496 0.30 +0.4
254,563 + BACOVA_03496 0.42 -0.6
254,563 + BACOVA_03496 0.42 -1.1
254,563 + BACOVA_03496 0.42 +1.2
254,620 + BACOVA_03496 0.49 -2.1
254,621 - BACOVA_03496 0.49 +1.5
254,622 + BACOVA_03496 0.49 -0.9
254,623 - BACOVA_03496 0.49 +0.5
254,623 - BACOVA_03496 0.49 +0.2
254,638 - BACOVA_03496 0.51 +0.1
254,659 + BACOVA_03496 0.53 +0.4
254,718 + BACOVA_03496 0.59 +0.2
254,722 + BACOVA_03496 0.60 -0.5
254,724 + BACOVA_03496 0.60 -1.1
254,733 + BACOVA_03496 0.61 -2.0
254,749 + BACOVA_03496 0.63 +0.2
254,794 + BACOVA_03496 0.68 -3.3
254,798 - BACOVA_03496 0.68 -1.4
254,816 - BACOVA_03496 0.70 -1.8
254,864 + BACOVA_03496 0.75 -0.5
254,899 + BACOVA_03496 0.79 -1.1
254,899 + BACOVA_03496 0.79 +0.6
254,900 - BACOVA_03496 0.79 +0.3
254,900 - BACOVA_03496 0.79 -1.4
254,901 + BACOVA_03496 0.79 -0.5
254,902 - BACOVA_03496 0.79 -0.2
254,902 - BACOVA_03496 0.79 -0.3
254,970 + BACOVA_03496 0.87 -1.7
254,970 + BACOVA_03496 0.87 -0.6
254,971 - BACOVA_03496 0.87 -0.7
254,971 - BACOVA_03496 0.87 -0.9
254,972 + BACOVA_03496 0.87 -0.0
254,986 + BACOVA_03496 0.88 +0.4
255,079 + -0.4
255,120 + -0.3
255,120 + -0.5
255,120 + -0.8
255,120 + -0.6
255,121 - -0.6

Or see this region's nucleotide sequence