Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03227

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03225 and BACOVA_03226 are separated by 11 nucleotidesBACOVA_03226 and BACOVA_03227 are separated by 147 nucleotidesBACOVA_03227 and BACOVA_03228 are separated by 428 nucleotidesBACOVA_03228 and BACOVA_03229 are separated by 115 nucleotides BACOVA_03225: BACOVA_03225 - aspartate--ammonia ligase, at 314,367 to 315,404 _03225 BACOVA_03226: BACOVA_03226 - hypothetical protein, at 315,416 to 315,532 _03226 BACOVA_03227: BACOVA_03227 - tRNA-Arg, at 315,680 to 315,751 _03227 BACOVA_03228: BACOVA_03228 - hypothetical protein, at 316,180 to 316,290 _03228 BACOVA_03229: BACOVA_03229 - GHMP kinase, N-terminal domain protein, at 316,406 to 319,258 _03229 Position (kb) 315 316Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 314.710 kb on + strand, within BACOVA_03225at 314.719 kb on + strand, within BACOVA_03225at 314.763 kb on - strand, within BACOVA_03225at 314.769 kb on + strand, within BACOVA_03225at 314.769 kb on + strand, within BACOVA_03225at 314.769 kb on + strand, within BACOVA_03225at 314.770 kb on - strand, within BACOVA_03225at 314.770 kb on - strand, within BACOVA_03225at 314.770 kb on - strand, within BACOVA_03225at 314.775 kb on + strand, within BACOVA_03225at 314.775 kb on + strand, within BACOVA_03225at 314.775 kb on + strand, within BACOVA_03225at 314.912 kb on - strand, within BACOVA_03225at 314.923 kb on - strand, within BACOVA_03225at 314.923 kb on - strand, within BACOVA_03225at 314.927 kb on + strand, within BACOVA_03225at 314.927 kb on + strand, within BACOVA_03225at 314.927 kb on + strand, within BACOVA_03225at 314.927 kb on + strand, within BACOVA_03225at 314.927 kb on + strand, within BACOVA_03225at 314.928 kb on - strand, within BACOVA_03225at 314.928 kb on - strand, within BACOVA_03225at 314.929 kb on + strand, within BACOVA_03225at 314.929 kb on + strand, within BACOVA_03225at 314.930 kb on - strand, within BACOVA_03225at 314.953 kb on + strand, within BACOVA_03225at 314.953 kb on + strand, within BACOVA_03225at 314.954 kb on - strand, within BACOVA_03225at 314.957 kb on + strand, within BACOVA_03225at 314.985 kb on + strand, within BACOVA_03225at 315.034 kb on - strand, within BACOVA_03225at 315.038 kb on - strand, within BACOVA_03225at 315.087 kb on - strand, within BACOVA_03225at 315.092 kb on + strand, within BACOVA_03225at 315.093 kb on - strand, within BACOVA_03225at 315.095 kb on - strand, within BACOVA_03225at 315.095 kb on - strand, within BACOVA_03225at 315.095 kb on - strand, within BACOVA_03225at 315.099 kb on - strand, within BACOVA_03225at 315.121 kb on + strand, within BACOVA_03225at 315.121 kb on + strand, within BACOVA_03225at 315.129 kb on + strand, within BACOVA_03225at 315.130 kb on - strand, within BACOVA_03225at 315.130 kb on - strand, within BACOVA_03225at 315.194 kb on + strand, within BACOVA_03225at 315.195 kb on - strand, within BACOVA_03225at 315.195 kb on - strand, within BACOVA_03225at 315.376 kb on + strandat 315.376 kb on + strandat 315.377 kb on - strandat 315.519 kb on + strand, within BACOVA_03226at 315.575 kb on + strandat 315.634 kb on + strandat 315.667 kb on + strandat 315.756 kb on - strandat 315.777 kb on - strandat 315.777 kb on - strandat 315.787 kb on - strandat 315.789 kb on + strandat 315.794 kb on + strandat 315.809 kb on + strandat 315.810 kb on - strandat 315.816 kb on + strandat 315.816 kb on + strandat 315.816 kb on + strandat 315.817 kb on - strandat 315.825 kb on - strandat 315.859 kb on + strandat 315.860 kb on - strandat 315.872 kb on - strandat 315.952 kb on - strandat 315.953 kb on + strandat 315.953 kb on + strandat 315.954 kb on - strandat 315.966 kb on - strandat 315.985 kb on + strandat 315.986 kb on + strandat 315.986 kb on + strandat 315.987 kb on - strandat 315.989 kb on + strandat 316.007 kb on - strandat 316.020 kb on + strandat 316.105 kb on + strandat 316.106 kb on + strandat 316.107 kb on - strandat 316.107 kb on - strandat 316.109 kb on - strandat 316.113 kb on + strandat 316.133 kb on + strandat 316.137 kb on + strandat 316.147 kb on + strandat 316.165 kb on + strandat 316.234 kb on - strand, within BACOVA_03228at 316.234 kb on - strand, within BACOVA_03228at 316.243 kb on - strand, within BACOVA_03228at 316.249 kb on - strand, within BACOVA_03228at 316.251 kb on + strand, within BACOVA_03228at 316.251 kb on + strand, within BACOVA_03228at 316.264 kb on - strand, within BACOVA_03228at 316.288 kb on + strandat 316.289 kb on - strandat 316.302 kb on - strandat 316.407 kb on + strandat 316.534 kb on + strandat 316.534 kb on + strandat 316.535 kb on - strandat 316.535 kb on - strandat 316.537 kb on - strandat 316.538 kb on + strandat 316.538 kb on + strandat 316.538 kb on + strandat 316.538 kb on + strandat 316.539 kb on - strandat 316.539 kb on - strandat 316.539 kb on - strandat 316.543 kb on - strandat 316.572 kb on + strandat 316.573 kb on - strandat 316.573 kb on - strandat 316.582 kb on + strandat 316.584 kb on + strandat 316.614 kb on - strandat 316.640 kb on + strandat 316.641 kb on - strandat 316.709 kb on - strand, within BACOVA_03229

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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314,710 + BACOVA_03225 0.33 -1.4
314,719 + BACOVA_03225 0.34 -2.4
314,763 - BACOVA_03225 0.38 -4.8
314,769 + BACOVA_03225 0.39 -3.2
314,769 + BACOVA_03225 0.39 -1.9
314,769 + BACOVA_03225 0.39 -1.0
314,770 - BACOVA_03225 0.39 -2.4
314,770 - BACOVA_03225 0.39 -3.4
314,770 - BACOVA_03225 0.39 -2.8
314,775 + BACOVA_03225 0.39 -1.9
314,775 + BACOVA_03225 0.39 -0.7
314,775 + BACOVA_03225 0.39 -3.5
314,912 - BACOVA_03225 0.53 -1.4
314,923 - BACOVA_03225 0.54 -1.3
314,923 - BACOVA_03225 0.54 -3.7
314,927 + BACOVA_03225 0.54 +0.7
314,927 + BACOVA_03225 0.54 -1.3
314,927 + BACOVA_03225 0.54 -0.3
314,927 + BACOVA_03225 0.54 -1.9
314,927 + BACOVA_03225 0.54 -1.7
314,928 - BACOVA_03225 0.54 -2.6
314,928 - BACOVA_03225 0.54 -2.4
314,929 + BACOVA_03225 0.54 -2.5
314,929 + BACOVA_03225 0.54 -1.0
314,930 - BACOVA_03225 0.54 -0.9
314,953 + BACOVA_03225 0.56 -0.7
314,953 + BACOVA_03225 0.56 -2.0
314,954 - BACOVA_03225 0.57 -2.7
314,957 + BACOVA_03225 0.57 -3.2
314,985 + BACOVA_03225 0.60 +1.3
315,034 - BACOVA_03225 0.64 -3.3
315,038 - BACOVA_03225 0.65 -2.6
315,087 - BACOVA_03225 0.69 -0.7
315,092 + BACOVA_03225 0.70 -1.5
315,093 - BACOVA_03225 0.70 -2.7
315,095 - BACOVA_03225 0.70 -3.0
315,095 - BACOVA_03225 0.70 -3.4
315,095 - BACOVA_03225 0.70 -2.0
315,099 - BACOVA_03225 0.71 -1.0
315,121 + BACOVA_03225 0.73 -1.0
315,121 + BACOVA_03225 0.73 -1.0
315,129 + BACOVA_03225 0.73 +0.3
315,130 - BACOVA_03225 0.74 +0.3
315,130 - BACOVA_03225 0.74 -2.6
315,194 + BACOVA_03225 0.80 -2.4
315,195 - BACOVA_03225 0.80 -3.8
315,195 - BACOVA_03225 0.80 +0.1
315,376 + -3.0
315,376 + -0.0
315,377 - -1.0
315,519 + BACOVA_03226 0.88 +0.7
315,575 + -0.7
315,634 + +2.5
315,667 + -0.2
315,756 - -1.9
315,777 - +0.3
315,777 - +0.5
315,787 - -0.1
315,789 + +0.3
315,794 + -2.2
315,809 + +0.4
315,810 - -0.7
315,816 + -0.3
315,816 + -0.8
315,816 + -0.9
315,817 - -1.4
315,825 - -0.1
315,859 + -0.6
315,860 - +1.8
315,872 - +0.3
315,952 - -0.8
315,953 + -0.7
315,953 + +0.0
315,954 - +1.1
315,966 - +0.1
315,985 + -0.4
315,986 + -1.5
315,986 + +0.3
315,987 - -2.0
315,989 + -0.3
316,007 - +1.3
316,020 + +0.8
316,105 + +1.4
316,106 + -0.7
316,107 - +0.3
316,107 - -0.6
316,109 - -0.6
316,113 + -0.4
316,133 + -0.6
316,137 + -0.7
316,147 + -0.7
316,165 + +0.7
316,234 - BACOVA_03228 0.49 -1.1
316,234 - BACOVA_03228 0.49 +0.6
316,243 - BACOVA_03228 0.57 -0.5
316,249 - BACOVA_03228 0.62 +0.5
316,251 + BACOVA_03228 0.64 +1.3
316,251 + BACOVA_03228 0.64 +0.1
316,264 - BACOVA_03228 0.76 +0.3
316,288 + -0.5
316,289 - -0.2
316,302 - -1.2
316,407 + -1.4
316,534 + +3.3
316,534 + -1.3
316,535 - +1.0
316,535 - -0.2
316,537 - -0.4
316,538 + +1.3
316,538 + -0.6
316,538 + -1.5
316,538 + -0.9
316,539 - -1.3
316,539 - -0.5
316,539 - -2.8
316,543 - +1.3
316,572 + +3.2
316,573 - +1.5
316,573 - +0.1
316,582 + +0.8
316,584 + +0.4
316,614 - +0.4
316,640 + +0.3
316,641 - -0.4
316,709 - BACOVA_03229 0.11 +0.6

Or see this region's nucleotide sequence